Wall clock time and date at job start Mon Mar 30 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 110.27599 * 2 1 4 4 C 1.38234 * 120.00052 * 359.84624 * 3 2 1 5 5 C 1.38232 * 119.99838 * 179.76580 * 4 3 2 6 6 C 1.38233 * 120.00126 * 0.50474 * 5 4 3 7 7 C 1.38237 * 120.00008 * 359.74636 * 6 5 4 8 8 C 1.38226 * 119.99928 * 0.02562 * 7 6 5 9 9 C 1.54595 * 110.30839 * 237.80499 * 2 1 3 10 10 C 1.54941 * 102.92178 * 263.04052 * 9 2 1 11 11 N 1.48523 * 103.22944 * 322.58714 * 10 9 2 12 12 C 1.46894 * 111.00131 * 159.71676 * 11 10 9 13 13 C 1.53001 * 109.47103 * 52.60508 * 12 11 10 14 14 C 1.50702 * 109.47392 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99937 * 180.27554 * 14 13 12 17 17 N 1.31513 * 120.00135 * 359.72287 * 16 14 13 18 18 Si 1.86802 * 119.99826 * 179.72647 * 16 14 13 19 19 H 1.48496 * 109.47195 * 59.99780 * 18 16 14 20 20 H 1.48499 * 109.47152 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47100 * 299.99731 * 18 16 14 22 22 C 1.47907 * 105.82039 * 39.20484 * 11 10 9 23 23 H 1.08996 * 109.46742 * 297.91598 * 1 2 3 24 24 H 1.09000 * 109.46441 * 57.91014 * 1 2 3 25 25 H 1.08999 * 109.47299 * 177.90944 * 1 2 3 26 26 H 1.07999 * 120.00083 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.99809 * 180.23081 * 5 4 3 28 28 H 1.08007 * 119.99907 * 179.72359 * 6 5 4 29 29 H 1.07996 * 119.99993 * 179.97438 * 7 6 5 30 30 H 1.08002 * 119.99944 * 179.97438 * 8 7 6 31 31 H 1.08996 * 110.72614 * 21.40004 * 9 2 1 32 32 H 1.09003 * 110.72427 * 144.68592 * 9 2 1 33 33 H 1.09000 * 110.66541 * 204.14587 * 10 9 2 34 34 H 1.09001 * 110.66177 * 81.02342 * 10 9 2 35 35 H 1.09000 * 109.47586 * 292.60647 * 12 11 10 36 36 H 1.09002 * 109.47482 * 172.59910 * 12 11 10 37 37 H 1.09000 * 109.47229 * 59.99948 * 13 12 11 38 38 H 1.08994 * 109.47067 * 300.00023 * 13 12 11 39 39 H 0.96994 * 120.00007 * 180.02562 * 17 16 14 40 40 H 1.08993 * 109.91548 * 94.02458 * 22 11 10 41 41 H 1.09005 * 109.91611 * 215.31683 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0522 1.4136 0.0000 4 6 1.1688 2.4768 -0.0032 5 6 1.6479 3.7735 0.0017 6 6 3.0103 4.0069 -0.0008 7 6 3.8938 2.9437 -0.0028 8 6 3.4148 1.6471 -0.0029 9 6 2.0665 -0.7725 -1.2269 10 6 2.3584 -2.1803 -0.6495 11 7 2.8809 -1.8885 0.7099 12 6 2.7667 -3.0653 1.5816 13 6 3.4141 -4.2713 0.8978 14 6 3.2975 -5.4785 1.7923 15 1 2.8101 -5.3941 2.7523 16 6 3.8178 -6.6894 1.3872 17 7 4.4108 -6.7923 0.2179 18 14 3.6801 -8.1840 2.4993 19 1 2.2477 -8.4776 2.7589 20 1 4.3137 -9.3530 1.8382 21 1 4.3700 -7.9093 3.7853 22 6 2.0644 -0.7673 1.2235 23 1 -0.3633 0.4811 0.9081 24 1 -0.3632 0.5460 -0.8707 25 1 -0.3634 -1.0270 -0.0375 26 1 0.1043 2.2944 -0.0061 27 1 0.9576 4.6041 0.0029 28 1 3.3846 5.0201 -0.0014 29 1 4.9582 3.1262 -0.0051 30 1 4.1050 0.8165 -0.0049 31 1 1.3103 -0.8260 -2.0100 32 1 2.9806 -0.3127 -1.6027 33 1 3.1104 -2.6936 -1.2488 34 1 1.4432 -2.7696 -0.5916 35 1 1.7143 -3.2767 1.7708 36 1 3.2734 -2.8683 2.5264 37 1 4.4665 -4.0600 0.7085 38 1 2.9075 -4.4684 -0.0470 39 1 4.7765 -7.6442 -0.0672 40 1 1.2324 -1.1531 1.8124 41 1 2.6813 -0.1083 1.8347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371895703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:00 Heat of formation + Delta-G solvation = 15.743622 kcal Electronic energy + Delta-G solvation = -19156.265934 eV Core-core repulsion = 16421.157053 eV Total energy + Delta-G solvation = -2735.108882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.19646 -38.06214 -34.54269 -32.73766 -31.06083 -30.39114 -28.91783 -28.86493 -26.01663 -24.13509 -22.50208 -22.01560 -21.84281 -19.73387 -18.97329 -17.13232 -16.38185 -15.34589 -15.24918 -14.74082 -14.40977 -14.35945 -14.00594 -13.80379 -13.43235 -13.02427 -12.78302 -12.35930 -12.12060 -12.03733 -11.96033 -11.68460 -11.24324 -11.09508 -10.98008 -10.83037 -10.76349 -10.58451 -10.42134 -10.35042 -9.88227 -9.34393 -9.12671 -8.90193 -8.61405 -8.33977 -7.77399 -5.99174 -4.01609 1.36640 1.41705 3.33808 3.38120 3.40574 3.77778 4.42706 4.59039 4.60488 4.83249 4.86965 4.98218 5.06284 5.18710 5.25002 5.36647 5.47904 5.50267 5.58653 5.65756 5.70083 5.89596 5.91076 6.01553 6.04340 6.10716 6.14269 6.23236 6.26523 6.39515 6.46011 6.51548 6.54538 6.55980 6.72646 6.94970 7.02921 7.49126 7.51713 7.74776 7.88290 8.07062 8.43984 9.05143 9.61981 11.12177 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.042637 B = 0.003816 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.549174 B = 7336.043017 C = 7495.478208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.036 4.036 3 C -0.059 4.059 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.131 4.131 7 C -0.121 4.121 8 C -0.107 4.107 9 C -0.112 4.112 10 C 0.042 3.958 11 N -0.517 5.517 12 C 0.054 3.946 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.053 0.947 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.048 3.952 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.123 0.877 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.021 0.979 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.043 0.957 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.270 19.447 -2.332 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.036 4.036 3 C -0.059 4.059 4 C -0.142 4.142 5 C -0.142 4.142 6 C -0.149 4.149 7 C -0.139 4.139 8 C -0.125 4.125 9 C -0.150 4.150 10 C -0.086 4.086 11 N -0.241 5.241 12 C -0.074 4.074 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.080 4.080 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.141 0.859 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.622 19.438 -2.445 20.382 hybrid contribution -0.883 -1.109 0.710 1.586 sum -6.505 18.330 -1.735 19.527 Atomic orbital electron populations 1.21963 0.93977 1.02132 1.01608 1.20402 0.95215 0.91396 0.96614 1.19820 0.93405 0.94239 0.98454 1.21175 0.99796 0.92231 1.00989 1.21086 0.95504 0.96663 1.00983 1.21105 0.93566 0.98774 1.01430 1.21157 0.99603 0.92751 1.00353 1.21193 0.95339 0.97117 0.98874 1.22713 1.00865 0.95616 0.95778 1.23155 0.99053 0.95198 0.91211 1.64880 1.49681 1.06910 1.02590 1.22504 0.98377 0.90302 0.96176 1.19142 0.96495 0.89943 0.95663 1.21158 1.37238 0.94255 1.03496 0.92857 1.24990 0.95232 0.98888 0.95169 1.69955 1.38271 1.25428 1.19618 0.86656 0.78251 0.82242 0.80830 1.20307 1.21270 1.20215 1.23019 0.95862 0.93883 0.95274 0.92380 0.92283 0.92144 0.85913 0.86526 0.86578 0.86254 0.85125 0.91295 0.90681 0.89570 0.93852 0.96095 0.91992 0.95769 0.96383 0.92943 0.93875 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 6.85 37.16 0.25 -1.30 16 2 C -0.04 -0.46 0.80 -154.30 -0.12 -0.59 16 3 C -0.06 -0.73 4.71 -104.62 -0.49 -1.23 16 4 C -0.12 -1.37 9.02 -39.59 -0.36 -1.73 16 5 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 6 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 7 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 8 C -0.11 -1.36 8.11 -39.58 -0.32 -1.68 16 9 C -0.11 -1.54 6.06 -24.87 -0.15 -1.69 16 10 C 0.04 0.72 5.10 -1.90 -0.01 0.71 16 11 N -0.52 -9.53 5.40 -230.46 -1.24 -10.77 16 12 C 0.05 1.16 4.97 -3.83 -0.02 1.14 16 13 C 0.02 0.65 4.63 -27.88 -0.13 0.52 16 14 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.05 0.74 5.78 -2.75 -0.02 0.72 16 23 H 0.06 0.60 7.70 -51.93 -0.40 0.20 16 24 H 0.06 0.58 7.43 -51.93 -0.39 0.19 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.12 1.17 5.98 -52.49 -0.31 0.86 16 27 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 28 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.13 1.76 7.81 -52.49 -0.41 1.35 16 31 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16 32 H 0.07 1.03 6.99 -51.93 -0.36 0.67 16 33 H 0.09 1.61 7.66 -51.93 -0.40 1.21 16 34 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 35 H 0.02 0.45 7.81 -51.93 -0.41 0.04 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.02 0.49 6.79 -51.93 -0.35 0.14 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.04 0.67 7.11 -51.93 -0.37 0.30 16 41 H 0.07 1.14 7.29 -51.93 -0.38 0.76 16 LS Contribution 323.36 15.07 4.87 4.87 Total: -1.00 -30.14 323.36 -10.30 -40.44 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.68 Total: -1.16 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -2.97 Total: -23.91 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.51 Total: -37.01 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.14 -10.30 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371895703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.186 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds