Wall clock time and date at job start Mon Mar 30 2020 06:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 110.27599 * 2 1 4 4 C 1.38234 * 120.00052 * 359.84624 * 3 2 1 5 5 C 1.38232 * 119.99838 * 179.76580 * 4 3 2 6 6 C 1.38233 * 120.00126 * 0.50474 * 5 4 3 7 7 C 1.38237 * 120.00008 * 359.74636 * 6 5 4 8 8 C 1.38226 * 119.99928 * 0.02562 * 7 6 5 9 9 C 1.54595 * 110.30839 * 237.80499 * 2 1 3 10 10 C 1.54941 * 102.92178 * 263.04052 * 9 2 1 11 11 N 1.48523 * 103.22944 * 322.58714 * 10 9 2 12 12 C 1.46894 * 111.00131 * 159.71676 * 11 10 9 13 13 C 1.53001 * 109.47103 * 52.60508 * 12 11 10 14 14 C 1.50702 * 109.47392 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99937 * 180.27554 * 14 13 12 17 17 N 1.31513 * 120.00135 * 359.72287 * 16 14 13 18 18 Si 1.86802 * 119.99826 * 179.72647 * 16 14 13 19 19 H 1.48496 * 109.47195 * 59.99780 * 18 16 14 20 20 H 1.48499 * 109.47152 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47100 * 299.99731 * 18 16 14 22 22 C 1.47907 * 105.82039 * 39.20484 * 11 10 9 23 23 H 1.08996 * 109.46742 * 297.91598 * 1 2 3 24 24 H 1.09000 * 109.46441 * 57.91014 * 1 2 3 25 25 H 1.08999 * 109.47299 * 177.90944 * 1 2 3 26 26 H 1.07999 * 120.00083 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.99809 * 180.23081 * 5 4 3 28 28 H 1.08007 * 119.99907 * 179.72359 * 6 5 4 29 29 H 1.07996 * 119.99993 * 179.97438 * 7 6 5 30 30 H 1.08002 * 119.99944 * 179.97438 * 8 7 6 31 31 H 1.08996 * 110.72614 * 21.40004 * 9 2 1 32 32 H 1.09003 * 110.72427 * 144.68592 * 9 2 1 33 33 H 1.09000 * 110.66541 * 204.14587 * 10 9 2 34 34 H 1.09001 * 110.66177 * 81.02342 * 10 9 2 35 35 H 1.09000 * 109.47586 * 292.60647 * 12 11 10 36 36 H 1.09002 * 109.47482 * 172.59910 * 12 11 10 37 37 H 1.09000 * 109.47229 * 59.99948 * 13 12 11 38 38 H 1.08994 * 109.47067 * 300.00023 * 13 12 11 39 39 H 0.96994 * 120.00007 * 180.02562 * 17 16 14 40 40 H 1.08993 * 109.91548 * 94.02458 * 22 11 10 41 41 H 1.09005 * 109.91611 * 215.31683 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0522 1.4136 0.0000 4 6 1.1688 2.4768 -0.0032 5 6 1.6479 3.7735 0.0017 6 6 3.0103 4.0069 -0.0008 7 6 3.8938 2.9437 -0.0028 8 6 3.4148 1.6471 -0.0029 9 6 2.0665 -0.7725 -1.2269 10 6 2.3584 -2.1803 -0.6495 11 7 2.8809 -1.8885 0.7099 12 6 2.7667 -3.0653 1.5816 13 6 3.4141 -4.2713 0.8978 14 6 3.2975 -5.4785 1.7923 15 1 2.8101 -5.3941 2.7523 16 6 3.8178 -6.6894 1.3872 17 7 4.4108 -6.7923 0.2179 18 14 3.6801 -8.1840 2.4993 19 1 2.2477 -8.4776 2.7589 20 1 4.3137 -9.3530 1.8382 21 1 4.3700 -7.9093 3.7853 22 6 2.0644 -0.7673 1.2235 23 1 -0.3633 0.4811 0.9081 24 1 -0.3632 0.5460 -0.8707 25 1 -0.3634 -1.0270 -0.0375 26 1 0.1043 2.2944 -0.0061 27 1 0.9576 4.6041 0.0029 28 1 3.3846 5.0201 -0.0014 29 1 4.9582 3.1262 -0.0051 30 1 4.1050 0.8165 -0.0049 31 1 1.3103 -0.8260 -2.0100 32 1 2.9806 -0.3127 -1.6027 33 1 3.1104 -2.6936 -1.2488 34 1 1.4432 -2.7696 -0.5916 35 1 1.7143 -3.2767 1.7708 36 1 3.2734 -2.8683 2.5264 37 1 4.4665 -4.0600 0.7085 38 1 2.9075 -4.4684 -0.0470 39 1 4.7765 -7.6442 -0.0672 40 1 1.2324 -1.1531 1.8124 41 1 2.6813 -0.1083 1.8347 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371895703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:59 Heat of formation + Delta-G solvation = -1.020283 kcal Electronic energy + Delta-G solvation = -19156.992872 eV Core-core repulsion = 16421.157053 eV Total energy + Delta-G solvation = -2735.835819 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.26138 -39.18086 -36.10681 -34.61561 -32.12181 -31.63956 -30.46861 -29.91954 -27.44446 -25.79740 -23.57961 -23.42583 -22.91781 -21.34616 -20.07331 -18.56992 -18.03149 -16.66308 -16.51796 -16.32125 -15.70729 -15.56140 -15.40949 -14.93815 -14.34552 -14.27888 -14.06657 -13.91592 -13.66442 -13.36787 -13.21742 -12.85866 -12.80727 -12.53253 -12.43202 -12.31937 -12.09248 -11.93597 -11.81504 -11.53251 -11.41788 -11.31651 -11.17908 -10.56617 -9.73473 -9.51098 -9.29087 -8.21503 -6.33354 0.51638 0.58249 1.38973 1.42442 1.50384 2.39286 2.91538 3.11585 3.16775 3.57791 3.75409 3.79153 4.11595 4.23824 4.25657 4.32264 4.37678 4.38215 4.47341 4.53453 4.67154 4.69590 4.80322 4.82126 4.85168 4.94415 5.00336 5.04319 5.13687 5.16700 5.21293 5.25846 5.33989 5.42582 5.61643 5.68956 5.70713 5.76790 5.83114 6.00379 6.15054 6.20578 6.30304 6.82888 7.35725 8.90356 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.042637 B = 0.003816 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.549174 B = 7336.043017 C = 7495.478208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.027 4.027 3 C -0.073 4.073 4 C -0.126 4.126 5 C -0.125 4.125 6 C -0.131 4.131 7 C -0.130 4.130 8 C -0.126 4.126 9 C -0.101 4.101 10 C 0.041 3.959 11 N -0.528 5.528 12 C 0.070 3.930 13 C 0.035 3.965 14 C -0.548 4.548 15 H 0.059 0.941 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.267 1.267 22 C 0.049 3.951 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.141 0.859 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.035 0.965 35 H 0.023 0.977 36 H 0.059 0.941 37 H -0.010 1.010 38 H -0.002 1.002 39 H 0.264 0.736 40 H 0.045 0.955 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 21.097 -1.684 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 C -0.073 4.073 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.149 4.149 7 C -0.148 4.148 8 C -0.144 4.144 9 C -0.139 4.139 10 C -0.087 4.087 11 N -0.252 5.252 12 C -0.058 4.058 13 C -0.002 4.002 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.078 4.078 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.159 0.841 27 H 0.162 0.838 28 H 0.159 0.841 29 H 0.149 0.851 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.009 0.991 38 H 0.016 0.984 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.173 21.109 -1.794 22.366 hybrid contribution -0.354 -1.545 0.474 1.654 sum -7.527 19.564 -1.319 21.004 Atomic orbital electron populations 1.21954 0.92126 1.02117 1.03164 1.20314 0.96566 0.91493 0.94420 1.19771 0.93518 0.94105 0.99926 1.21402 1.00469 0.92178 1.00359 1.21458 0.96006 0.97133 0.99658 1.21449 0.93656 0.99614 1.00151 1.21366 1.00673 0.92478 1.00269 1.21158 0.95453 0.97381 1.00447 1.22651 1.01502 0.93093 0.96672 1.23096 0.97720 0.97301 0.90579 1.64783 1.51256 1.06440 1.02757 1.22152 0.97715 0.89897 0.95987 1.18950 0.94512 0.91725 0.95056 1.21592 1.37578 0.95387 1.04068 0.92268 1.25969 0.94542 1.02370 0.96716 1.70097 1.38988 1.26449 1.21515 0.85476 0.78818 0.77843 0.78757 1.19085 1.20689 1.19187 1.23052 0.95438 0.92784 0.96563 0.91180 0.90333 0.92996 0.84149 0.83793 0.84108 0.85115 0.87125 0.89253 0.90954 0.92100 0.94637 0.95892 0.92214 0.99139 0.98357 0.92697 0.93714 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 6.85 71.98 0.49 -2.24 16 2 C -0.03 -0.68 0.80 -52.05 -0.04 -0.72 16 3 C -0.07 -1.71 4.71 -19.86 -0.09 -1.81 16 4 C -0.13 -2.42 9.02 22.27 0.20 -2.22 16 5 C -0.12 -2.10 10.05 22.27 0.22 -1.87 16 6 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 7 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 8 C -0.13 -3.15 8.11 22.27 0.18 -2.97 16 9 C -0.10 -2.77 6.06 31.80 0.19 -2.58 16 10 C 0.04 1.47 5.10 86.65 0.44 1.91 16 11 N -0.53 -20.21 5.40 -883.04 -4.76 -24.97 16 12 C 0.07 3.14 4.97 86.30 0.43 3.57 16 13 C 0.03 1.92 4.63 29.85 0.14 2.06 16 14 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 0.13 5.46 84.66 0.46 0.59 16 17 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 18 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C 0.05 1.52 5.78 86.44 0.50 2.02 16 23 H 0.07 1.24 7.70 -2.39 -0.02 1.23 16 24 H 0.08 1.28 7.43 -2.39 -0.02 1.26 16 25 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.14 2.14 5.98 -2.91 -0.02 2.12 16 27 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 28 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 29 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.11 3.12 7.81 -2.91 -0.02 3.10 16 31 H 0.09 2.08 7.85 -2.39 -0.02 2.06 16 32 H 0.07 2.02 6.99 -2.39 -0.02 2.00 16 33 H 0.06 2.45 7.66 -2.39 -0.02 2.43 16 34 H 0.04 1.31 8.00 -2.39 -0.02 1.30 16 35 H 0.02 1.00 7.81 -2.39 -0.02 0.99 16 36 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 37 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 38 H 0.00 -0.11 6.79 -2.39 -0.02 -0.13 16 39 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.04 1.36 7.11 -2.39 -0.02 1.34 16 41 H 0.07 2.24 7.29 -2.38 -0.02 2.22 16 Total: -1.00 -66.18 323.36 2.33 -63.85 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.98 Total: 12.19 kcal Atomic # 6 Polarization: -44.43 SS G_CDS: 3.81 Total: -40.63 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -4.48 Total: -82.28 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.18 2.33 -63.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371895703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.827 kcal (2) G-P(sol) polarization free energy of solvation -66.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds