Wall clock time and date at job start Mon Mar 30 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 110.35008 * 2 1 4 4 C 1.38239 * 119.99633 * 180.02562 * 3 2 1 5 5 C 1.38235 * 119.99767 * 179.74093 * 4 3 2 6 6 C 1.38238 * 119.99613 * 0.55893 * 5 4 3 7 7 C 1.38229 * 120.00568 * 359.69873 * 6 5 4 8 8 C 1.38234 * 119.99763 * 0.02562 * 7 6 5 9 9 C 1.54594 * 110.30787 * 122.14341 * 2 1 3 10 10 C 1.54934 * 102.92355 * 96.95979 * 9 2 1 11 11 N 1.48534 * 103.22567 * 37.41310 * 10 9 2 12 12 C 1.46903 * 111.00052 * 200.28026 * 11 10 9 13 13 C 1.52999 * 109.47054 * 287.39613 * 12 11 10 14 14 C 1.50695 * 109.47105 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00340 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00074 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99806 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00059 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47384 * 269.99940 * 18 16 14 20 20 H 1.48499 * 109.47266 * 30.00362 * 18 16 14 21 21 H 1.48498 * 109.47199 * 150.00076 * 18 16 14 22 22 C 1.47903 * 105.82132 * 320.79180 * 11 10 9 23 23 H 1.09002 * 109.47465 * 182.14490 * 1 2 3 24 24 H 1.09002 * 109.47730 * 302.13880 * 1 2 3 25 25 H 1.09003 * 109.47275 * 62.14379 * 1 2 3 26 26 H 1.08001 * 120.00363 * 0.02562 * 4 3 2 27 27 H 1.07993 * 120.00177 * 180.27434 * 5 4 3 28 28 H 1.08010 * 119.99518 * 179.71925 * 6 5 4 29 29 H 1.07997 * 120.00616 * 179.97438 * 7 6 5 30 30 H 1.08000 * 120.00361 * 179.97438 * 8 7 6 31 31 H 1.09005 * 110.72337 * 215.32139 * 9 2 1 32 32 H 1.09001 * 110.72445 * 338.60019 * 9 2 1 33 33 H 1.09003 * 110.66525 * 278.97768 * 10 9 2 34 34 H 1.09006 * 110.66814 * 155.84341 * 10 9 2 35 35 H 1.08996 * 109.46954 * 167.39511 * 12 11 10 36 36 H 1.09007 * 109.46931 * 47.39283 * 12 11 10 37 37 H 1.09009 * 109.47261 * 59.99899 * 13 12 11 38 38 H 1.09000 * 109.47175 * 299.99935 * 13 12 11 39 39 H 0.97009 * 119.99799 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.91595 * 144.68233 * 22 11 10 41 41 H 1.08998 * 109.92087 * 265.78238 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4129 0.0000 4 6 3.4169 1.6446 -0.0005 5 6 3.8976 2.9406 -0.0059 6 6 3.0155 4.0050 0.0009 7 6 1.6528 3.7734 0.0068 8 6 1.1720 2.4773 0.0064 9 6 2.0665 -0.7714 1.2276 10 6 2.3584 -2.1797 0.6515 11 7 2.8809 -1.8890 -0.7082 12 6 2.7668 -3.0667 -1.5789 13 6 3.8049 -4.1109 -1.1630 14 6 3.6875 -5.3192 -2.0558 15 1 2.9469 -5.3402 -2.8416 16 6 4.5263 -6.3976 -1.8702 17 7 5.4285 -6.3719 -0.9137 18 14 4.3813 -7.8952 -2.9773 19 1 3.4190 -8.8581 -2.3841 20 1 3.8987 -7.4752 -4.3174 21 1 5.7109 -8.5429 -3.1107 22 6 2.0644 -0.7683 -1.2229 23 1 -0.3634 -1.0269 0.0385 24 1 -0.3634 0.5467 0.8702 25 1 -0.3634 0.4802 -0.9086 26 1 4.1060 0.8130 -0.0014 27 1 4.9623 3.1216 -0.0108 28 1 3.3912 5.0176 0.0012 29 1 0.9637 4.6049 0.0125 30 1 0.1073 2.2963 0.0115 31 1 2.9805 -0.3111 1.6031 32 1 1.3102 -0.8241 2.0108 33 1 1.4432 -2.7691 0.5941 34 1 3.1105 -2.6924 1.2512 35 1 2.9423 -2.7720 -2.6135 36 1 1.7672 -3.4914 -1.4865 37 1 3.6295 -4.4056 -0.1283 38 1 4.8045 -3.6863 -1.2553 39 1 6.0185 -7.1308 -0.7828 40 1 2.6812 -0.1099 -1.8345 41 1 1.2343 -1.1546 -1.8143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371895704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:02 Heat of formation + Delta-G solvation = 15.333852 kcal Electronic energy + Delta-G solvation = -19119.877635 eV Core-core repulsion = 16384.750985 eV Total energy + Delta-G solvation = -2735.126651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19806 -38.04453 -34.49818 -32.75666 -31.05855 -30.43547 -28.96271 -28.79831 -26.06320 -24.15286 -22.51306 -22.02831 -21.62412 -19.89938 -19.06707 -17.13764 -16.36855 -15.33957 -15.22422 -14.72160 -14.38823 -14.35550 -14.06377 -13.71579 -13.43115 -13.02684 -12.87359 -12.36626 -12.09974 -12.07530 -11.91277 -11.68876 -11.31097 -11.12234 -11.00817 -10.84402 -10.80815 -10.56557 -10.43643 -10.37912 -9.78539 -9.37323 -9.09974 -8.89783 -8.61510 -8.31630 -7.78473 -5.97468 -3.99852 1.36757 1.42057 3.33044 3.39274 3.42650 3.77911 4.42496 4.57663 4.59031 4.82345 4.85133 4.98673 5.05247 5.18441 5.23056 5.38336 5.44515 5.50120 5.55668 5.65088 5.67057 5.87542 5.88327 6.00169 6.03111 6.06791 6.12974 6.17687 6.24879 6.36366 6.47105 6.47656 6.51894 6.56215 6.72331 6.99929 7.03217 7.44880 7.52925 7.79204 7.92312 8.11019 8.45980 9.07575 9.63651 11.13889 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038729 B = 0.003852 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.798997 B = 7267.868430 C = 7516.407114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.035 4.035 3 C -0.060 4.060 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.130 4.130 7 C -0.125 4.125 8 C -0.124 4.124 9 C -0.111 4.111 10 C 0.040 3.960 11 N -0.515 5.515 12 C 0.055 3.945 13 C 0.031 3.969 14 C -0.522 4.522 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.274 1.274 21 H -0.286 1.286 22 C 0.048 3.952 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.131 0.869 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.022 0.978 37 H 0.015 0.985 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.529 18.620 3.819 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.036 4.036 3 C -0.060 4.060 4 C -0.125 4.125 5 C -0.138 4.138 6 C -0.148 4.148 7 C -0.143 4.143 8 C -0.142 4.142 9 C -0.149 4.149 10 C -0.088 4.088 11 N -0.239 5.239 12 C -0.073 4.073 13 C -0.007 4.007 14 C -0.561 4.561 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.199 1.199 21 H -0.212 1.212 22 C -0.080 4.080 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.149 0.851 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.034 0.966 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.831 18.637 3.888 20.586 hybrid contribution -0.864 -1.110 -0.700 1.571 sum -8.695 17.527 3.189 19.823 Atomic orbital electron populations 1.21957 0.93983 1.02052 1.01648 1.20393 0.95171 0.91465 0.96577 1.19806 0.93414 0.94192 0.98567 1.21206 0.95328 0.97170 0.98777 1.21166 0.99640 0.92740 1.00285 1.21108 0.93569 0.98779 1.01388 1.21082 0.95495 0.96664 1.01015 1.21168 0.99763 0.92235 1.01035 1.22697 1.00914 0.95467 0.95785 1.23196 0.98747 0.95439 0.91445 1.64875 1.49640 1.06955 1.02420 1.22508 0.99204 0.89992 0.95550 1.19027 0.93828 0.91282 0.96533 1.21207 1.17851 1.00837 1.16199 0.92871 1.24991 0.95289 0.98550 0.95478 1.69978 1.20643 1.30973 1.31627 0.86606 0.77319 0.83045 0.81090 1.20731 1.19903 1.21199 1.22994 0.95912 0.93845 0.95279 0.92222 0.92281 0.92350 0.85069 0.86219 0.86570 0.86530 0.85940 0.90594 0.91310 0.94081 0.89695 0.92267 0.96011 0.96618 0.95759 0.93027 0.90746 0.93951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 6.86 37.16 0.25 -1.25 16 2 C -0.04 -0.45 0.81 -154.31 -0.12 -0.58 16 3 C -0.06 -0.74 4.71 -104.62 -0.49 -1.23 16 4 C -0.11 -1.36 8.10 -39.58 -0.32 -1.68 16 5 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 6 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 7 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 8 C -0.12 -1.37 9.03 -39.58 -0.36 -1.72 16 9 C -0.11 -1.48 6.06 -24.87 -0.15 -1.63 16 10 C 0.04 0.66 5.91 -1.90 -0.01 0.65 16 11 N -0.51 -9.48 5.24 -230.45 -1.21 -10.69 16 12 C 0.05 1.18 4.64 -3.82 -0.02 1.16 16 13 C 0.03 0.81 5.06 -27.89 -0.14 0.67 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 C 0.05 0.74 5.74 -2.75 -0.02 0.72 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.56 7.42 -51.93 -0.39 0.17 16 25 H 0.06 0.59 7.71 -51.93 -0.40 0.19 16 26 H 0.13 1.80 7.81 -52.49 -0.41 1.39 16 27 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 29 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 30 H 0.12 1.15 5.99 -52.49 -0.31 0.84 16 31 H 0.08 1.03 6.99 -51.93 -0.36 0.67 16 32 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 33 H 0.04 0.69 7.81 -51.93 -0.41 0.28 16 34 H 0.08 1.52 7.80 -51.93 -0.41 1.11 16 35 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 36 H 0.02 0.46 7.83 -51.92 -0.41 0.06 16 37 H 0.02 0.43 7.37 -51.92 -0.38 0.05 16 38 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.07 1.16 7.29 -51.93 -0.38 0.78 16 41 H 0.04 0.65 7.32 -51.93 -0.38 0.27 16 LS Contribution 324.80 15.07 4.89 4.89 Total: -1.00 -30.43 324.80 -10.29 -40.72 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.71 Total: -1.61 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -2.98 Total: -23.75 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.47 Total: -37.08 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.43 -10.29 -40.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371895704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.055 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds