Wall clock time and date at job start Mon Mar 30 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38233 * 119.99926 * 2 1 4 4 C 1.38227 * 120.00271 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00089 * 359.95276 * 4 3 2 6 6 C 1.50699 * 120.00434 * 180.02562 * 5 4 3 7 7 H 1.09002 * 110.27314 * 2.08892 * 6 5 4 8 8 C 1.54595 * 110.39601 * 124.23772 * 6 5 4 9 9 C 1.54930 * 102.92126 * 140.91946 * 8 6 5 10 10 N 1.48529 * 103.22985 * 322.58585 * 9 8 6 11 11 C 1.46896 * 111.00242 * 159.72287 * 10 9 8 12 12 C 1.52998 * 109.47029 * 52.60528 * 11 10 9 13 13 C 1.50706 * 109.47348 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 C 1.47900 * 105.82011 * 39.20719 * 10 9 8 22 22 C 1.38235 * 119.99731 * 0.28208 * 5 4 3 23 23 C 1.38234 * 120.00249 * 359.50762 * 22 5 4 24 24 H 1.08995 * 109.47519 * 90.00016 * 1 2 3 25 25 H 1.09007 * 109.47129 * 209.99822 * 1 2 3 26 26 H 1.08995 * 109.47267 * 329.99553 * 1 2 3 27 27 H 1.08008 * 119.99808 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.00275 * 179.97438 * 4 3 2 29 29 H 1.09000 * 110.71938 * 259.27982 * 8 6 5 30 30 H 1.09000 * 110.72239 * 22.37803 * 8 6 5 31 31 H 1.09006 * 110.66724 * 204.14900 * 9 8 6 32 32 H 1.09004 * 110.67073 * 81.02312 * 9 8 6 33 33 H 1.09000 * 109.47274 * 292.60659 * 11 10 9 34 34 H 1.09002 * 109.47154 * 172.60166 * 11 10 9 35 35 H 1.09001 * 109.47671 * 60.00253 * 12 11 10 36 36 H 1.09006 * 109.47297 * 299.99972 * 12 11 10 37 37 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 38 38 H 1.09003 * 109.91347 * 94.02396 * 21 10 9 39 39 H 1.08996 * 109.92079 * 215.11971 * 21 10 9 40 40 H 1.08008 * 119.99787 * 179.72525 * 22 5 4 41 41 H 1.08003 * 120.00485 * 180.25652 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 0.0002 -0.0001 6 6 5.7786 0.0002 -0.0001 7 1 6.1563 1.0220 0.0368 8 6 6.3174 -0.8147 1.1982 9 6 7.5369 -1.5547 0.5936 10 7 7.0821 -1.8944 -0.7790 11 6 8.2256 -2.1634 -1.6610 12 6 9.1324 -3.2125 -1.0147 13 6 10.3059 -3.4881 -1.9192 14 1 10.3956 -2.9674 -2.8612 15 6 11.2649 -4.4050 -1.5444 16 7 11.1554 -5.0395 -0.3976 17 14 12.7190 -4.7471 -2.6660 18 1 12.3784 -5.8551 -3.5942 19 1 13.0384 -3.5262 -3.4486 20 1 13.8963 -5.1320 -1.8466 21 6 6.3132 -0.7223 -1.2506 22 6 3.5805 -1.1970 -0.0050 23 6 2.1982 -1.1971 -0.0001 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6581 2.1325 -0.0004 28 1 4.1204 2.1326 -0.0010 29 1 6.6296 -0.1524 2.0057 30 1 5.5682 -1.5236 1.5505 31 1 7.7579 -2.4592 1.1605 32 1 8.4068 -0.8988 0.5593 33 1 8.7885 -1.2432 -1.8171 34 1 7.8651 -2.5360 -2.6199 35 1 8.5696 -4.1329 -0.8586 36 1 9.4930 -2.8401 -0.0558 37 1 10.4001 -4.8621 0.1846 38 1 6.9635 -0.0546 -1.8157 39 1 5.4834 -1.0500 -1.8768 40 1 4.1206 -2.1323 -0.0091 41 1 1.6582 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378648101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:34 Heat of formation + Delta-G solvation = 4.409035 kcal Electronic energy + Delta-G solvation = -18725.054733 eV Core-core repulsion = 15989.454346 eV Total energy + Delta-G solvation = -2735.600386 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.96908 -38.22745 -34.50426 -33.10945 -31.34441 -30.92350 -28.91271 -28.46414 -25.90474 -23.89448 -22.86984 -21.98754 -21.61414 -19.91318 -19.73405 -16.76847 -16.51121 -15.80355 -15.20920 -14.89111 -14.63296 -13.97918 -13.90595 -13.71326 -13.44461 -13.31100 -12.80168 -12.73217 -12.44382 -12.19827 -12.14012 -11.58306 -11.38355 -11.18581 -11.15311 -11.04854 -10.76619 -10.65133 -10.46474 -10.12625 -10.04242 -9.67213 -8.94877 -8.57133 -8.47228 -8.30678 -7.88397 -6.34886 -4.03504 1.27962 1.37517 3.44486 3.48080 3.63745 3.68051 4.45151 4.58918 4.60831 4.72181 4.83671 4.93844 4.97410 5.00862 5.22029 5.37526 5.39112 5.42960 5.43688 5.55560 5.62813 5.65507 5.73735 5.87675 6.00409 6.02057 6.08368 6.10483 6.14412 6.28668 6.33559 6.42199 6.43675 6.53762 6.67604 6.80233 6.98658 7.28874 7.35860 7.54766 7.71288 8.25424 8.48140 8.90403 9.68781 11.06302 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.049096 B = 0.003348 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.171723 B = 8360.240988 C = 8426.610884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.070 4.070 6 C -0.061 4.061 7 H 0.078 0.922 8 C -0.116 4.116 9 C 0.040 3.960 10 N -0.518 5.518 11 C 0.061 3.939 12 C 0.012 3.988 13 C -0.603 4.603 14 H 0.048 0.952 15 C 0.015 3.985 16 N -0.913 5.913 17 Si 1.072 2.928 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.284 1.284 21 C 0.043 3.957 22 C -0.102 4.102 23 C -0.120 4.120 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.015 0.985 36 H 0.009 0.991 37 H 0.269 0.731 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.131 0.869 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.477 12.409 2.383 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.070 4.070 6 C -0.080 4.080 7 H 0.096 0.904 8 C -0.154 4.154 9 C -0.088 4.088 10 N -0.243 5.243 11 C -0.067 4.067 12 C -0.026 4.026 13 C -0.642 4.642 14 H 0.066 0.934 15 C -0.189 4.189 16 N -0.549 5.549 17 Si 0.900 3.100 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.210 1.210 21 C -0.085 4.085 22 C -0.120 4.120 23 C -0.138 4.138 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.148 0.852 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.402 11.039 2.218 20.727 hybrid contribution -0.844 1.707 -0.009 1.904 sum -18.246 12.746 2.209 22.366 Atomic orbital electron populations 1.20766 0.91511 1.02510 1.02124 1.19892 0.95871 0.93334 1.00619 1.20943 0.94097 0.97315 1.01754 1.21042 0.94106 0.97488 1.00843 1.19809 0.94876 0.93109 0.99253 1.21047 0.90961 0.99819 0.96178 0.90357 1.22654 0.98050 0.98414 0.96253 1.23162 0.95432 0.99381 0.90828 1.64881 1.22691 1.34272 1.02417 1.22356 0.89559 0.98770 0.95983 1.19275 0.93751 0.93535 0.95998 1.22039 1.08915 1.26926 1.06304 0.93412 1.25834 1.01229 0.93340 0.98456 1.70745 1.32428 1.41489 1.10282 0.83509 0.75627 0.75888 0.74963 1.21414 1.21559 1.20990 1.22954 0.98092 0.91691 0.95742 1.21154 0.93851 0.98408 0.98603 1.21044 0.94252 0.97393 1.01135 0.91386 0.91684 0.91812 0.86456 0.86356 0.91348 0.90583 0.89818 0.93840 0.95886 0.91800 0.96676 0.97297 0.92019 0.94053 0.90640 0.85156 0.86238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.10 -1.00 5.88 -104.62 -0.62 -1.62 16 3 C -0.12 -1.26 9.70 -39.59 -0.38 -1.65 16 4 C -0.12 -1.30 9.68 -39.59 -0.38 -1.68 16 5 C -0.07 -0.87 4.72 -104.63 -0.49 -1.37 16 6 C -0.06 -0.80 3.21 -90.42 -0.29 -1.09 16 7 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 8 C -0.12 -1.57 6.49 -24.87 -0.16 -1.74 16 9 C 0.04 0.68 5.10 -1.90 -0.01 0.67 16 10 N -0.52 -9.60 5.40 -230.46 -1.24 -10.85 16 11 C 0.06 1.33 4.97 -3.83 -0.02 1.31 16 12 C 0.01 0.31 3.94 -27.88 -0.11 0.20 16 13 C -0.60 -17.56 9.11 -34.44 -0.31 -17.87 16 14 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 15 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 16 N -0.91 -28.40 13.65 55.43 0.76 -27.65 16 17 Si 1.07 25.73 29.90 -169.99 -5.08 20.65 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.04 0.67 6.13 -2.75 -0.02 0.65 16 22 C -0.10 -1.29 8.18 -39.58 -0.32 -1.61 16 23 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.44 8.09 -51.92 -0.42 0.02 16 26 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 28 H 0.12 1.12 7.97 -52.48 -0.42 0.70 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.03 6.87 -51.93 -0.36 0.67 16 31 H 0.08 1.53 7.66 -51.93 -0.40 1.13 16 32 H 0.04 0.78 8.00 -51.93 -0.42 0.36 16 33 H 0.02 0.50 7.81 -51.93 -0.41 0.10 16 34 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.01 0.42 8.01 -51.93 -0.42 0.00 16 36 H 0.01 0.24 6.66 -51.93 -0.35 -0.11 16 37 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 38 H 0.04 0.64 7.57 -51.93 -0.39 0.25 16 39 H 0.08 1.16 7.36 -51.93 -0.38 0.78 16 40 H 0.13 1.74 7.71 -52.48 -0.40 1.34 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 327.79 15.07 4.94 4.94 Total: -1.00 -31.23 327.79 -10.67 -41.90 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.80 Total: -1.34 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -3.24 Total: -27.65 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: -0.49 Total: -38.49 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.23 -10.67 -41.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378648101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.313 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds