Wall clock time and date at job start Mon Mar 30 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38233 * 119.99926 * 2 1 4 4 C 1.38227 * 120.00271 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00089 * 359.95276 * 4 3 2 6 6 C 1.50699 * 120.00434 * 180.02562 * 5 4 3 7 7 H 1.09002 * 110.27314 * 2.08892 * 6 5 4 8 8 C 1.54595 * 110.39601 * 124.23772 * 6 5 4 9 9 C 1.54930 * 102.92126 * 140.91946 * 8 6 5 10 10 N 1.48529 * 103.22985 * 322.58585 * 9 8 6 11 11 C 1.46896 * 111.00242 * 159.72287 * 10 9 8 12 12 C 1.52998 * 109.47029 * 52.60528 * 11 10 9 13 13 C 1.50706 * 109.47348 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 C 1.47900 * 105.82011 * 39.20719 * 10 9 8 22 22 C 1.38235 * 119.99731 * 0.28208 * 5 4 3 23 23 C 1.38234 * 120.00249 * 359.50762 * 22 5 4 24 24 H 1.08995 * 109.47519 * 90.00016 * 1 2 3 25 25 H 1.09007 * 109.47129 * 209.99822 * 1 2 3 26 26 H 1.08995 * 109.47267 * 329.99553 * 1 2 3 27 27 H 1.08008 * 119.99808 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.00275 * 179.97438 * 4 3 2 29 29 H 1.09000 * 110.71938 * 259.27982 * 8 6 5 30 30 H 1.09000 * 110.72239 * 22.37803 * 8 6 5 31 31 H 1.09006 * 110.66724 * 204.14900 * 9 8 6 32 32 H 1.09004 * 110.67073 * 81.02312 * 9 8 6 33 33 H 1.09000 * 109.47274 * 292.60659 * 11 10 9 34 34 H 1.09002 * 109.47154 * 172.60166 * 11 10 9 35 35 H 1.09001 * 109.47671 * 60.00253 * 12 11 10 36 36 H 1.09006 * 109.47297 * 299.99972 * 12 11 10 37 37 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 38 38 H 1.09003 * 109.91347 * 94.02396 * 21 10 9 39 39 H 1.08996 * 109.92079 * 215.11971 * 21 10 9 40 40 H 1.08008 * 119.99787 * 179.72525 * 22 5 4 41 41 H 1.08003 * 120.00485 * 180.25652 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 0.0002 -0.0001 6 6 5.7786 0.0002 -0.0001 7 1 6.1563 1.0220 0.0368 8 6 6.3174 -0.8147 1.1982 9 6 7.5369 -1.5547 0.5936 10 7 7.0821 -1.8944 -0.7790 11 6 8.2256 -2.1634 -1.6610 12 6 9.1324 -3.2125 -1.0147 13 6 10.3059 -3.4881 -1.9192 14 1 10.3956 -2.9674 -2.8612 15 6 11.2649 -4.4050 -1.5444 16 7 11.1554 -5.0395 -0.3976 17 14 12.7190 -4.7471 -2.6660 18 1 12.3784 -5.8551 -3.5942 19 1 13.0384 -3.5262 -3.4486 20 1 13.8963 -5.1320 -1.8466 21 6 6.3132 -0.7223 -1.2506 22 6 3.5805 -1.1970 -0.0050 23 6 2.1982 -1.1971 -0.0001 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6581 2.1325 -0.0004 28 1 4.1204 2.1326 -0.0010 29 1 6.6296 -0.1524 2.0057 30 1 5.5682 -1.5236 1.5505 31 1 7.7579 -2.4592 1.1605 32 1 8.4068 -0.8988 0.5593 33 1 8.7885 -1.2432 -1.8171 34 1 7.8651 -2.5360 -2.6199 35 1 8.5696 -4.1329 -0.8586 36 1 9.4930 -2.8401 -0.0558 37 1 10.4001 -4.8621 0.1846 38 1 6.9635 -0.0546 -1.8157 39 1 5.4834 -1.0500 -1.8768 40 1 4.1206 -2.1323 -0.0091 41 1 1.6582 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378648101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:33 Heat of formation + Delta-G solvation = -12.960130 kcal Electronic energy + Delta-G solvation = -18725.807916 eV Core-core repulsion = 15989.454346 eV Total energy + Delta-G solvation = -2736.353570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.99640 -39.41334 -36.20791 -34.67662 -32.68391 -31.77410 -30.33171 -29.90372 -27.01600 -25.76219 -23.79008 -23.71553 -22.56110 -21.51485 -20.79430 -18.90886 -17.58583 -17.06012 -16.22259 -16.09486 -15.77291 -15.66784 -15.45030 -14.72239 -14.62581 -14.55082 -14.23735 -14.04235 -13.66649 -13.41992 -13.13919 -13.04134 -12.83175 -12.67971 -12.36581 -12.23550 -12.03657 -11.98568 -11.94246 -11.67940 -11.60086 -11.51727 -10.74994 -10.56993 -9.79327 -9.42263 -9.32198 -8.72690 -6.43076 0.42967 0.53263 1.50790 1.60462 1.78271 2.54070 2.81913 3.06971 3.13217 3.57873 3.72213 3.78101 4.02594 4.09692 4.18607 4.23924 4.30815 4.36111 4.38717 4.44719 4.58640 4.64549 4.67792 4.80199 4.85215 4.87282 4.88953 4.92431 4.99403 5.02455 5.15147 5.20556 5.24724 5.32727 5.38050 5.56419 5.73833 5.76579 5.81432 5.99836 6.11148 6.15576 6.17292 6.54150 7.39450 8.68478 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.049096 B = 0.003348 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.171723 B = 8360.240988 C = 8426.610884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.126 4.126 4 C -0.119 4.119 5 C -0.084 4.084 6 C -0.051 4.051 7 H 0.097 0.903 8 C -0.104 4.104 9 C 0.037 3.963 10 N -0.529 5.529 11 C 0.076 3.924 12 C 0.019 3.981 13 C -0.622 4.622 14 H 0.050 0.950 15 C -0.038 4.038 16 N -0.936 5.936 17 Si 1.122 2.878 18 H -0.271 1.271 19 H -0.269 1.269 20 H -0.281 1.281 21 C 0.045 3.955 22 C -0.118 4.118 23 C -0.132 4.132 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.023 0.977 34 H 0.060 0.940 35 H -0.013 1.013 36 H -0.005 1.005 37 H 0.255 0.745 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.620 14.307 1.810 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.085 4.085 6 C -0.069 4.069 7 H 0.115 0.885 8 C -0.142 4.142 9 C -0.091 4.091 10 N -0.253 5.253 11 C -0.052 4.052 12 C -0.018 4.018 13 C -0.661 4.661 14 H 0.068 0.932 15 C -0.235 4.235 16 N -0.573 5.573 17 Si 0.943 3.057 18 H -0.197 1.197 19 H -0.193 1.193 20 H -0.206 1.206 21 C -0.083 4.083 22 C -0.136 4.136 23 C -0.150 4.150 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.160 0.840 28 H 0.155 0.845 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.006 0.994 36 H 0.013 0.987 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.581 12.953 1.650 22.710 hybrid contribution -0.590 1.124 0.196 1.285 sum -19.171 14.077 1.846 23.856 Atomic orbital electron populations 1.20819 0.89489 1.03562 1.02944 1.20263 0.97460 0.92964 0.99270 1.21290 0.93990 0.98355 1.00765 1.21284 0.94723 0.97582 1.00088 1.19749 0.94243 0.93668 1.00808 1.20969 0.91714 1.00110 0.94153 0.88477 1.22588 0.96131 0.98448 0.97030 1.23144 0.96959 0.98751 0.90207 1.64795 1.21308 1.36643 1.02580 1.22021 0.89990 0.97230 0.95933 1.19128 0.93715 0.93604 0.95384 1.22469 1.09856 1.26990 1.06738 0.93162 1.27495 1.04217 0.92852 0.98985 1.70883 1.32310 1.42783 1.11319 0.82882 0.72222 0.77082 0.73543 1.19692 1.19335 1.20603 1.22988 0.97536 0.90670 0.97103 1.21118 0.94623 0.97960 0.99930 1.21239 0.93856 0.98566 1.01313 0.90562 0.91097 0.90384 0.83974 0.84503 0.89096 0.90711 0.91995 0.94643 0.95881 0.92197 0.99419 0.98656 0.93539 0.93821 0.90657 0.86952 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.66 16 2 C -0.10 -1.82 5.88 -19.87 -0.12 -1.94 16 3 C -0.13 -2.22 9.70 22.27 0.22 -2.00 16 4 C -0.12 -2.33 9.68 22.27 0.22 -2.11 16 5 C -0.08 -1.97 4.72 -19.87 -0.09 -2.07 16 6 C -0.05 -1.25 3.21 -10.66 -0.03 -1.29 16 7 H 0.10 2.06 7.93 -2.39 -0.02 2.04 16 8 C -0.10 -2.76 6.49 31.80 0.21 -2.55 16 9 C 0.04 1.31 5.10 86.65 0.44 1.75 16 10 N -0.53 -20.05 5.40 -883.05 -4.76 -24.81 16 11 C 0.08 3.42 4.97 86.30 0.43 3.85 16 12 C 0.02 1.04 3.94 29.85 0.12 1.16 16 13 C -0.62 -36.86 9.11 25.60 0.23 -36.63 16 14 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 15 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 16 N -0.94 -59.56 13.65 21.45 0.29 -59.27 16 17 Si 1.12 51.32 29.90 68.60 2.05 53.37 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 C 0.04 1.36 6.13 86.45 0.53 1.89 16 22 C -0.12 -2.93 8.18 22.27 0.18 -2.75 16 23 C -0.13 -2.82 9.70 22.27 0.22 -2.60 16 24 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 0.79 8.09 -2.38 -0.02 0.77 16 26 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 27 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 28 H 0.14 2.11 7.97 -2.91 -0.02 2.09 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 2.01 6.87 -2.39 -0.02 2.00 16 31 H 0.06 2.41 7.66 -2.38 -0.02 2.39 16 32 H 0.04 1.29 8.00 -2.38 -0.02 1.27 16 33 H 0.02 1.02 7.81 -2.39 -0.02 1.00 16 34 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 35 H -0.01 -0.75 8.01 -2.39 -0.02 -0.77 16 36 H 0.00 -0.27 6.66 -2.38 -0.02 -0.29 16 37 H 0.26 16.52 7.22 -92.71 -0.67 15.85 16 38 H 0.04 1.31 7.57 -2.39 -0.02 1.29 16 39 H 0.08 2.29 7.36 -2.39 -0.02 2.27 16 40 H 0.11 3.11 7.71 -2.91 -0.02 3.09 16 41 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -68.12 327.79 2.38 -65.75 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.08 Total: 12.72 kcal Atomic # 6 Polarization: -51.47 SS G_CDS: 3.72 Total: -47.76 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -4.47 Total: -84.08 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.05 Total: 53.37 kcal Total: -68.12 2.38 -65.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378648101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.788 kcal (2) G-P(sol) polarization free energy of solvation -68.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds