Wall clock time and date at job start Mon Mar 30 2020 07:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47204 * 2 1 4 4 C 1.53003 * 109.47151 * 176.61719 * 3 2 1 5 5 N 1.46907 * 115.54923 * 299.02034 * 4 3 2 6 6 C 1.46894 * 110.99917 * 280.25727 * 5 4 3 7 7 H 1.09000 * 109.47207 * 30.34429 * 6 5 4 8 8 C 1.50700 * 109.47423 * 270.33982 * 6 5 4 9 9 H 1.08006 * 119.99817 * 331.69680 * 8 6 5 10 10 C 1.37875 * 120.00178 * 151.68812 * 8 6 5 11 11 N 1.31514 * 120.00068 * 180.78926 * 10 8 6 12 12 Si 1.86799 * 119.99805 * 0.78586 * 10 8 6 13 13 H 1.48506 * 109.46770 * 88.53668 * 12 10 8 14 14 H 1.48501 * 109.47288 * 208.53109 * 12 10 8 15 15 H 1.48501 * 109.47602 * 328.53520 * 12 10 8 16 16 C 1.50701 * 109.46913 * 150.34040 * 6 5 4 17 17 C 1.38241 * 119.99949 * 45.47920 * 16 6 5 18 18 C 1.38234 * 119.99570 * 179.78976 * 17 16 6 19 19 C 1.38231 * 120.00497 * 0.43330 * 18 17 16 20 20 C 1.38241 * 119.99923 * 359.81946 * 19 18 17 21 21 C 1.38232 * 119.99971 * 225.74755 * 16 6 5 22 22 C 1.53006 * 117.51775 * 84.71903 * 4 3 2 23 23 C 1.52999 * 117.50001 * 153.34971 * 4 3 2 24 24 H 1.08998 * 109.47045 * 299.99889 * 1 2 3 25 25 H 1.09008 * 109.47042 * 59.99278 * 1 2 3 26 26 H 1.08995 * 109.47705 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46717 * 240.00501 * 2 1 3 28 28 H 1.08997 * 109.47348 * 120.00423 * 2 1 3 29 29 H 1.08998 * 109.47205 * 56.62131 * 3 2 1 30 30 H 1.08998 * 109.47673 * 296.61570 * 3 2 1 31 31 H 1.00901 * 110.99538 * 44.21548 * 5 4 3 32 32 H 0.97004 * 119.99967 * 180.02562 * 11 10 8 33 33 H 1.07997 * 119.99751 * 359.97438 * 17 16 6 34 34 H 1.08000 * 119.99312 * 180.27626 * 18 17 16 35 35 H 1.07997 * 120.00464 * 179.83353 * 19 18 17 36 36 H 1.07997 * 120.00282 * 179.97438 * 20 19 18 37 37 H 1.07994 * 120.00355 * 359.97438 * 21 16 6 38 38 H 1.09000 * 117.49907 * 214.97189 * 22 4 3 39 39 H 1.08998 * 117.49406 * 359.97438 * 22 4 3 40 40 H 1.08993 * 117.49633 * 359.97438 * 23 4 3 41 41 H 1.08999 * 117.49621 * 145.00072 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5676 1.4433 0.0851 5 7 4.1354 0.8236 1.2900 6 6 4.0780 1.7448 2.4327 7 1 3.2148 2.4019 2.3267 8 6 5.3369 2.5721 2.4749 9 1 6.2581 2.1744 2.0752 10 6 5.3127 3.8368 3.0236 11 7 6.4078 4.5647 3.0464 12 14 3.7245 4.5162 3.7345 13 1 3.6172 4.1298 5.1644 14 1 3.7247 5.9968 3.6206 15 1 2.5692 3.9621 2.9839 16 6 3.9535 0.9541 3.7096 17 6 4.7573 -0.1508 3.9195 18 6 4.6461 -0.8735 5.0926 19 6 3.7249 -0.4967 6.0520 20 6 2.9175 0.6052 5.8398 21 6 3.0316 1.3304 4.6685 22 6 4.3486 1.2923 -1.2219 23 6 4.3076 2.6444 -0.5071 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6281 1.9735 0.8581 30 1 1.7271 1.9386 -0.9187 31 1 3.6701 -0.0461 1.5027 32 1 6.3909 5.4543 3.4327 33 1 5.4742 -0.4475 3.1683 34 1 5.2772 -1.7340 5.2585 35 1 3.6362 -1.0628 6.9673 36 1 2.1975 0.8994 6.5890 37 1 2.4009 2.1913 4.5028 38 1 5.2836 0.7331 -1.1878 39 1 3.7740 1.1918 -2.1427 40 1 3.7061 3.4338 -0.9577 41 1 5.2156 2.9748 -0.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379436684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:04 Heat of formation + Delta-G solvation = 40.941050 kcal Electronic energy + Delta-G solvation = -19948.201063 eV Core-core repulsion = 17214.184824 eV Total energy + Delta-G solvation = -2734.016239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.93861 -37.82796 -34.11618 -33.41491 -31.92676 -30.28346 -29.48861 -27.15526 -26.32488 -22.62469 -22.13876 -21.88996 -21.16252 -19.99857 -18.42684 -17.01211 -16.19907 -15.54624 -14.96224 -14.64203 -14.38824 -14.25992 -13.72020 -13.30813 -13.07871 -12.85438 -12.74912 -12.38877 -12.26330 -11.90504 -11.80519 -11.23372 -11.14606 -10.97656 -10.89036 -10.66176 -10.56599 -10.45122 -10.14283 -9.87390 -9.61332 -9.50282 -8.99082 -8.60890 -8.24955 -7.90245 -7.38599 -6.11522 -4.06838 2.04654 2.10323 3.24595 3.28143 3.32919 4.35632 4.39809 4.52537 4.96566 5.05407 5.16696 5.19422 5.31009 5.49542 5.53208 5.59046 5.65604 5.70894 5.75651 5.92403 5.97267 6.02171 6.10974 6.13138 6.24557 6.25289 6.26736 6.36371 6.48328 6.50852 6.64668 6.71269 6.73457 6.86776 7.09823 7.14655 7.19831 7.44572 7.54798 7.73588 7.95047 8.30199 8.67499 9.00864 9.51236 11.00662 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.009999 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.684732 B = 2799.575516 C = 3813.185827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.107 4.107 4 C 0.046 3.954 5 N -0.638 5.638 6 C 0.212 3.788 7 H 0.026 0.974 8 C -0.474 4.474 9 H 0.084 0.916 10 C 0.075 3.925 11 N -0.893 5.893 12 Si 0.859 3.141 13 H -0.271 1.271 14 H -0.290 1.290 15 H -0.263 1.263 16 C -0.050 4.050 17 C -0.101 4.101 18 C -0.125 4.125 19 C -0.147 4.147 20 C -0.123 4.123 21 C -0.138 4.138 22 C -0.170 4.170 23 C -0.154 4.154 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.322 0.678 32 H 0.264 0.736 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.233 -8.340 -2.540 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.147 4.147 4 C -0.046 4.046 5 N -0.267 5.267 6 C 0.105 3.895 7 H 0.044 0.956 8 C -0.513 4.513 9 H 0.102 0.898 10 C -0.128 4.128 11 N -0.531 5.531 12 Si 0.688 3.312 13 H -0.196 1.196 14 H -0.217 1.217 15 H -0.189 1.189 16 C -0.051 4.051 17 C -0.119 4.119 18 C -0.144 4.144 19 C -0.166 4.166 20 C -0.141 4.141 21 C -0.157 4.157 22 C -0.208 4.208 23 C -0.191 4.191 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.484 -7.983 -2.636 11.944 hybrid contribution -1.723 0.636 0.919 2.054 sum -10.207 -7.346 -1.717 12.692 Atomic orbital electron populations 1.21771 0.96373 1.01138 1.01510 1.21442 0.95107 0.97187 1.02004 1.21596 0.94943 0.96485 1.01680 1.21217 0.89220 1.02929 0.91267 1.60531 1.57494 1.05571 1.03104 1.18812 0.98032 0.89858 0.82827 0.95626 1.20841 0.94930 0.97746 1.37735 0.89841 1.24935 0.95647 0.96792 0.95393 1.69874 1.27119 1.10846 1.45269 0.87190 0.85299 0.78163 0.80589 1.19612 1.21657 1.18871 1.20831 0.92280 0.93408 0.98626 1.20982 0.98751 0.95121 0.97049 1.21079 0.98671 1.00016 0.94585 1.20871 0.98203 0.98276 0.99205 1.20937 0.99833 0.96231 0.97116 1.21012 0.99716 0.99919 0.95014 1.22991 1.02024 1.01693 0.94057 1.23126 1.04014 0.90073 1.01907 0.92967 0.93053 0.93056 0.91975 0.92097 0.92098 0.92032 0.85950 0.92606 0.85664 0.87048 0.87295 0.87309 0.87661 0.88829 0.90300 0.90464 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.60 5.79 -26.73 -0.15 -1.75 16 3 C -0.11 -1.68 5.17 -26.73 -0.14 -1.82 16 4 C 0.05 0.83 1.59 -131.59 -0.21 0.62 16 5 N -0.64 -12.57 6.01 -95.45 -0.57 -13.15 16 6 C 0.21 4.79 1.77 -70.02 -0.12 4.66 16 7 H 0.03 0.62 4.09 -51.93 -0.21 0.41 16 8 C -0.47 -12.67 7.23 -34.44 -0.25 -12.92 16 9 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 10 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 11 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 12 Si 0.86 21.17 24.52 -169.99 -4.17 17.01 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 15 H -0.26 -6.17 6.01 56.52 0.34 -5.83 16 16 C -0.05 -1.07 4.48 -104.62 -0.47 -1.54 16 17 C -0.10 -1.97 8.98 -39.58 -0.36 -2.33 16 18 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 19 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 20 C -0.12 -2.19 10.05 -39.58 -0.40 -2.59 16 21 C -0.14 -2.82 8.51 -39.58 -0.34 -3.16 16 22 C -0.17 -2.78 10.17 -26.73 -0.27 -3.05 16 23 C -0.15 -2.93 9.54 -26.73 -0.25 -3.18 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16 29 H 0.06 1.05 7.50 -51.93 -0.39 0.66 16 30 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 31 H 0.32 5.84 6.32 -39.29 -0.25 5.59 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.13 2.44 7.89 -52.49 -0.41 2.02 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.11 2.17 6.06 -52.49 -0.32 1.85 16 38 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.12 2.79 6.68 -51.93 -0.35 2.45 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -28.50 324.34 -9.11 -37.61 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.55 Total: 11.30 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -3.49 Total: -31.81 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.20 Total: -38.99 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.17 Total: 17.01 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.50 -9.11 -37.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379436684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.548 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds