Wall clock time and date at job start Mon Mar 30 2020 07:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47204 * 2 1 4 4 C 1.53003 * 109.47151 * 176.61719 * 3 2 1 5 5 N 1.46907 * 115.54923 * 299.02034 * 4 3 2 6 6 C 1.46894 * 110.99917 * 280.25727 * 5 4 3 7 7 H 1.09000 * 109.47207 * 30.34429 * 6 5 4 8 8 C 1.50700 * 109.47423 * 270.33982 * 6 5 4 9 9 H 1.08006 * 119.99817 * 331.69680 * 8 6 5 10 10 C 1.37875 * 120.00178 * 151.68812 * 8 6 5 11 11 N 1.31514 * 120.00068 * 180.78926 * 10 8 6 12 12 Si 1.86799 * 119.99805 * 0.78586 * 10 8 6 13 13 H 1.48506 * 109.46770 * 88.53668 * 12 10 8 14 14 H 1.48501 * 109.47288 * 208.53109 * 12 10 8 15 15 H 1.48501 * 109.47602 * 328.53520 * 12 10 8 16 16 C 1.50701 * 109.46913 * 150.34040 * 6 5 4 17 17 C 1.38241 * 119.99949 * 45.47920 * 16 6 5 18 18 C 1.38234 * 119.99570 * 179.78976 * 17 16 6 19 19 C 1.38231 * 120.00497 * 0.43330 * 18 17 16 20 20 C 1.38241 * 119.99923 * 359.81946 * 19 18 17 21 21 C 1.38232 * 119.99971 * 225.74755 * 16 6 5 22 22 C 1.53006 * 117.51775 * 84.71903 * 4 3 2 23 23 C 1.52999 * 117.50001 * 153.34971 * 4 3 2 24 24 H 1.08998 * 109.47045 * 299.99889 * 1 2 3 25 25 H 1.09008 * 109.47042 * 59.99278 * 1 2 3 26 26 H 1.08995 * 109.47705 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46717 * 240.00501 * 2 1 3 28 28 H 1.08997 * 109.47348 * 120.00423 * 2 1 3 29 29 H 1.08998 * 109.47205 * 56.62131 * 3 2 1 30 30 H 1.08998 * 109.47673 * 296.61570 * 3 2 1 31 31 H 1.00901 * 110.99538 * 44.21548 * 5 4 3 32 32 H 0.97004 * 119.99967 * 180.02562 * 11 10 8 33 33 H 1.07997 * 119.99751 * 359.97438 * 17 16 6 34 34 H 1.08000 * 119.99312 * 180.27626 * 18 17 16 35 35 H 1.07997 * 120.00464 * 179.83353 * 19 18 17 36 36 H 1.07997 * 120.00282 * 179.97438 * 20 19 18 37 37 H 1.07994 * 120.00355 * 359.97438 * 21 16 6 38 38 H 1.09000 * 117.49907 * 214.97189 * 22 4 3 39 39 H 1.08998 * 117.49406 * 359.97438 * 22 4 3 40 40 H 1.08993 * 117.49633 * 359.97438 * 23 4 3 41 41 H 1.08999 * 117.49621 * 145.00072 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5676 1.4433 0.0851 5 7 4.1354 0.8236 1.2900 6 6 4.0780 1.7448 2.4327 7 1 3.2148 2.4019 2.3267 8 6 5.3369 2.5721 2.4749 9 1 6.2581 2.1744 2.0752 10 6 5.3127 3.8368 3.0236 11 7 6.4078 4.5647 3.0464 12 14 3.7245 4.5162 3.7345 13 1 3.6172 4.1298 5.1644 14 1 3.7247 5.9968 3.6206 15 1 2.5692 3.9621 2.9839 16 6 3.9535 0.9541 3.7096 17 6 4.7573 -0.1508 3.9195 18 6 4.6461 -0.8735 5.0926 19 6 3.7249 -0.4967 6.0520 20 6 2.9175 0.6052 5.8398 21 6 3.0316 1.3304 4.6685 22 6 4.3486 1.2923 -1.2219 23 6 4.3076 2.6444 -0.5071 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6281 1.9735 0.8581 30 1 1.7271 1.9386 -0.9187 31 1 3.6701 -0.0461 1.5027 32 1 6.3909 5.4543 3.4327 33 1 5.4742 -0.4475 3.1683 34 1 5.2772 -1.7340 5.2585 35 1 3.6362 -1.0628 6.9673 36 1 2.1975 0.8994 6.5890 37 1 2.4009 2.1913 4.5028 38 1 5.2836 0.7331 -1.1878 39 1 3.7740 1.1918 -2.1427 40 1 3.7061 3.4338 -0.9577 41 1 5.2156 2.9748 -0.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379436684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:03 Heat of formation + Delta-G solvation = 24.503227 kcal Electronic energy + Delta-G solvation = -19948.913861 eV Core-core repulsion = 17214.184824 eV Total energy + Delta-G solvation = -2734.729037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.44953 -39.24262 -35.77151 -34.60740 -33.91953 -31.73011 -30.97471 -28.74078 -27.81098 -24.36152 -23.47876 -23.31698 -22.40594 -21.58643 -19.93453 -19.00760 -17.72143 -16.98265 -16.41950 -16.29742 -15.91916 -15.73977 -15.07856 -14.90466 -14.62557 -14.24238 -14.18329 -14.00199 -13.72782 -13.31159 -13.09867 -12.85708 -12.61383 -12.48564 -12.24279 -12.15196 -12.10802 -11.82981 -11.63537 -11.54524 -11.44790 -11.10676 -10.74237 -10.39793 -9.69987 -9.41646 -9.02406 -8.28251 -6.25688 0.58812 0.65074 1.25022 1.26800 1.33227 2.29006 2.90469 3.03530 3.14870 3.46404 3.82284 4.05118 4.09803 4.13362 4.21330 4.29246 4.37490 4.39745 4.45655 4.58122 4.71323 4.78158 4.81780 4.89486 4.90431 4.91002 5.03038 5.06008 5.20345 5.22065 5.27903 5.31599 5.39299 5.44547 5.57237 5.58508 5.67770 5.71845 5.92027 6.09531 6.26379 6.58429 6.76622 6.93401 7.36058 8.88221 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.009999 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.684732 B = 2799.575516 C = 3813.185827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.101 4.101 4 C 0.037 3.963 5 N -0.645 5.645 6 C 0.226 3.774 7 H 0.013 0.987 8 C -0.460 4.460 9 H 0.036 0.964 10 C 0.020 3.980 11 N -0.945 5.945 12 Si 0.915 3.085 13 H -0.264 1.264 14 H -0.293 1.293 15 H -0.248 1.248 16 C -0.077 4.077 17 C -0.116 4.116 18 C -0.121 4.121 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.159 4.159 22 C -0.140 4.140 23 C -0.178 4.178 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.334 0.666 32 H 0.262 0.738 33 H 0.115 0.885 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.806 -10.560 -1.880 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.140 4.140 4 C -0.055 4.055 5 N -0.276 5.276 6 C 0.118 3.882 7 H 0.030 0.970 8 C -0.498 4.498 9 H 0.054 0.946 10 C -0.177 4.177 11 N -0.586 5.586 12 Si 0.741 3.259 13 H -0.189 1.189 14 H -0.220 1.220 15 H -0.172 1.172 16 C -0.078 4.078 17 C -0.135 4.135 18 C -0.139 4.139 19 C -0.154 4.154 20 C -0.142 4.142 21 C -0.177 4.177 22 C -0.178 4.178 23 C -0.216 4.216 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.153 0.847 32 H 0.072 0.928 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.110 0.890 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.079 -10.235 -1.985 15.214 hybrid contribution -0.857 1.182 0.699 1.619 sum -11.936 -9.053 -1.287 15.036 Atomic orbital electron populations 1.21741 0.94756 1.02238 1.01707 1.21403 0.96461 0.95289 1.02067 1.21555 0.92629 0.98216 1.01647 1.21470 0.90960 1.01914 0.91169 1.60345 1.58560 1.05727 1.02939 1.18451 0.94878 0.90018 0.84886 0.96971 1.20910 0.94921 0.98133 1.35875 0.94570 1.25607 0.98490 0.97300 0.96336 1.70023 1.29428 1.11369 1.47798 0.86296 0.82221 0.77119 0.80252 1.18878 1.21979 1.17219 1.20669 0.94287 0.94795 0.98027 1.21023 0.98641 0.95443 0.98345 1.21450 0.98817 1.00259 0.93380 1.21359 0.96426 0.97509 1.00104 1.21323 1.00341 0.95984 0.96541 1.21123 1.00008 1.00502 0.96112 1.23024 1.01660 0.98561 0.94558 1.22967 1.02916 0.91843 1.03870 0.93730 0.91933 0.91522 0.90692 0.93222 0.94101 0.90259 0.84688 0.92845 0.86685 0.83851 0.83207 0.84300 0.88373 0.89639 0.86680 0.88980 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.91 71.98 0.71 -2.27 16 2 C -0.11 -2.79 5.79 30.59 0.18 -2.61 16 3 C -0.10 -3.01 5.17 30.60 0.16 -2.85 16 4 C 0.04 1.32 1.59 3.53 0.01 1.33 16 5 N -0.65 -26.00 6.01 -455.91 -2.74 -28.74 16 6 C 0.23 10.48 1.77 43.42 0.08 10.56 16 7 H 0.01 0.61 4.09 -2.39 -0.01 0.60 16 8 C -0.46 -25.96 7.23 25.60 0.19 -25.78 16 9 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 10 C 0.02 1.17 5.47 84.65 0.46 1.63 16 11 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 12 Si 0.91 45.04 24.52 68.60 1.68 46.72 16 13 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 15 H -0.25 -11.41 6.01 99.48 0.60 -10.81 16 16 C -0.08 -3.26 4.48 -19.86 -0.09 -3.35 16 17 C -0.12 -4.48 8.98 22.27 0.20 -4.28 16 18 C -0.12 -3.79 10.05 22.27 0.22 -3.57 16 19 C -0.14 -3.92 10.05 22.27 0.22 -3.70 16 20 C -0.12 -4.00 10.05 22.27 0.22 -3.78 16 21 C -0.16 -6.29 8.51 22.27 0.19 -6.10 16 22 C -0.14 -4.46 10.17 30.60 0.31 -4.15 16 23 C -0.18 -6.99 9.54 30.60 0.29 -6.70 16 24 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 1.32 6.68 -2.39 -0.02 1.30 16 29 H 0.04 1.38 7.50 -2.39 -0.02 1.36 16 30 H 0.08 2.07 8.11 -2.39 -0.02 2.05 16 31 H 0.33 12.13 6.32 -89.69 -0.57 11.56 16 32 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.12 4.57 7.89 -2.91 -0.02 4.55 16 34 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.10 3.95 6.06 -2.91 -0.02 3.93 16 38 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.07 3.68 6.68 -2.39 -0.02 3.66 16 Total: -1.00 -66.03 324.34 2.92 -63.11 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.32 Total: 33.74 kcal Atomic # 6 Polarization: -58.97 SS G_CDS: 3.35 Total: -55.62 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -2.44 Total: -87.96 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.68 Total: 46.72 kcal Total: -66.03 2.92 -63.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379436684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.612 kcal (2) G-P(sol) polarization free energy of solvation -66.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds