Wall clock time and date at job start Mon Mar 30 2020 07:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46895 * 2 1 4 4 C 1.52995 * 109.47105 * 239.99931 * 2 1 3 5 5 N 1.46900 * 115.54931 * 281.60062 * 4 2 1 6 6 C 1.46901 * 110.99955 * 294.40716 * 5 4 2 7 7 H 1.08998 * 109.46840 * 44.88862 * 6 5 4 8 8 C 1.50702 * 109.47362 * 284.89100 * 6 5 4 9 9 H 1.07997 * 120.00189 * 143.64316 * 8 6 5 10 10 C 1.37882 * 119.99931 * 323.64892 * 8 6 5 11 11 N 1.31514 * 119.99763 * 17.38771 * 10 8 6 12 12 Si 1.86796 * 120.00002 * 197.39225 * 10 8 6 13 13 H 1.48503 * 109.47109 * 59.99724 * 12 10 8 14 14 H 1.48501 * 109.47051 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47116 * 299.99628 * 12 10 8 16 16 C 1.50696 * 109.47132 * 164.89040 * 6 5 4 17 17 C 1.38238 * 119.99929 * 14.90349 * 16 6 5 18 18 C 1.38238 * 119.99705 * 179.81246 * 17 16 6 19 19 C 1.38230 * 119.99956 * 0.39356 * 18 17 16 20 20 C 1.38233 * 120.00352 * 359.85949 * 19 18 17 21 21 C 1.38235 * 119.99888 * 359.95804 * 20 19 18 22 22 C 1.52997 * 117.49858 * 135.88809 * 4 2 1 23 23 C 1.53001 * 60.00395 * 252.51056 * 22 4 2 24 24 H 1.08999 * 109.46960 * 175.00086 * 1 2 3 25 25 H 1.08997 * 109.47224 * 55.00065 * 1 2 3 26 26 H 1.09005 * 109.46823 * 295.00257 * 1 2 3 27 27 H 1.09003 * 109.46989 * 119.99953 * 2 1 3 28 28 H 1.08997 * 109.46972 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47264 * 299.99785 * 3 2 1 30 30 H 1.09004 * 109.47271 * 60.00093 * 3 2 1 31 31 H 1.00900 * 111.00635 * 58.36578 * 5 4 2 32 32 H 0.96998 * 119.99805 * 180.02562 * 11 10 8 33 33 H 1.07991 * 120.00190 * 359.97438 * 17 16 6 34 34 H 1.08002 * 120.00239 * 180.23179 * 18 17 16 35 35 H 1.08003 * 119.99957 * 179.83622 * 19 18 17 36 36 H 1.08002 * 120.00237 * 179.97438 * 20 19 18 37 37 H 1.08005 * 120.00126 * 180.02562 * 21 20 19 38 38 H 1.08999 * 117.50188 * 359.97438 * 22 4 2 39 39 H 1.08998 * 117.49722 * 145.01874 * 22 4 2 40 40 H 1.08993 * 117.50026 * 252.51414 * 23 22 4 41 41 H 1.09004 * 117.49383 * 107.48757 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0000 -2.1887 -1.1943 6 6 2.9222 -2.7026 -0.1729 7 1 2.8177 -2.1155 0.7395 8 6 4.3386 -2.5992 -0.6772 9 1 5.1382 -2.3521 0.0054 10 6 4.6137 -2.8199 -2.0101 11 7 3.6433 -2.7809 -2.8970 12 14 6.3645 -3.1745 -2.5563 13 1 6.8547 -4.4027 -1.8806 14 1 6.3933 -3.3732 -4.0276 15 1 7.2373 -2.0287 -2.1949 16 6 2.5966 -4.1450 0.1178 17 6 1.7838 -4.8573 -0.7441 18 6 1.4883 -6.1816 -0.4795 19 6 1.9989 -6.7910 0.6513 20 6 2.8075 -6.0772 1.5159 21 6 3.1061 -4.7541 1.2493 22 6 3.1942 -0.0738 -2.0170 23 6 1.7811 -0.0576 -2.6033 24 1 -0.3633 -1.0238 -0.0896 25 1 -0.3633 0.5894 -0.8418 26 1 -0.3633 0.4344 0.9314 27 1 1.8934 -0.5138 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.0605 -2.5190 -1.0322 32 1 3.8367 -2.9366 -3.8346 33 1 1.3818 -4.3801 -1.6255 34 1 0.8563 -6.7392 -1.1547 35 1 1.7659 -7.8249 0.8594 36 1 3.2061 -6.5533 2.3996 37 1 3.7382 -4.1965 1.9246 38 1 3.5899 0.8662 -1.6325 39 1 3.9242 -0.7367 -2.4815 40 1 1.5814 -0.7099 -3.4534 41 1 1.2474 0.8928 -2.6041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379467811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:08 Heat of formation + Delta-G solvation = 71.746800 kcal Electronic energy + Delta-G solvation = -20342.511983 eV Core-core repulsion = 17609.831581 eV Total energy + Delta-G solvation = -2732.680402 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.73711 -37.79561 -34.08367 -31.99719 -31.44922 -30.05982 -29.14686 -26.82300 -25.94148 -22.83125 -22.17491 -21.35826 -21.06147 -19.86092 -17.60041 -16.37083 -15.78244 -15.32377 -14.84913 -14.27644 -14.02840 -13.80661 -13.43583 -13.07210 -12.70936 -12.46752 -12.32726 -12.02205 -11.80791 -11.67869 -11.49965 -11.10532 -10.81642 -10.73949 -10.60814 -10.35621 -10.29319 -10.08526 -9.99905 -9.72989 -9.31912 -9.18900 -8.41726 -8.03743 -7.97621 -7.61575 -6.83855 -5.59305 -3.92266 2.30090 2.36170 3.36062 3.41225 3.47401 4.50286 4.76441 4.94366 5.33595 5.39264 5.45481 5.57491 5.67197 5.73688 5.78284 5.86873 6.00528 6.07922 6.19045 6.23271 6.24789 6.38986 6.41508 6.47676 6.53408 6.57406 6.70225 6.78432 6.82809 6.86800 6.97817 7.01210 7.16341 7.29881 7.33423 7.47174 7.71550 7.81422 7.95059 8.00781 8.26348 8.55313 8.95192 9.22677 9.69709 11.13843 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.009902 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.275462 B = 2827.077713 C = 3988.693576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 C -0.140 4.140 4 C 0.075 3.925 5 N -0.584 5.584 6 C 0.248 3.752 7 H -0.002 1.002 8 C -0.526 4.526 9 H 0.052 0.948 10 C 0.094 3.906 11 N -0.793 5.793 12 Si 0.855 3.145 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.280 1.280 16 C -0.032 4.032 17 C -0.109 4.109 18 C -0.131 4.131 19 C -0.156 4.156 20 C -0.131 4.131 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.173 4.173 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.297 0.703 32 H 0.246 0.754 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.355 1.710 3.840 6.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 C -0.198 4.198 4 C -0.018 4.018 5 N -0.212 5.212 6 C 0.140 3.860 7 H 0.016 0.984 8 C -0.564 4.564 9 H 0.070 0.930 10 C -0.114 4.114 11 N -0.425 5.425 12 Si 0.682 3.318 13 H -0.205 1.205 14 H -0.215 1.215 15 H -0.205 1.205 16 C -0.033 4.033 17 C -0.127 4.127 18 C -0.149 4.149 19 C -0.175 4.175 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.185 4.185 23 C -0.211 4.211 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.057 0.943 33 H 0.151 0.849 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.149 0.851 40 H 0.109 0.891 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.972 1.588 3.084 6.062 hybrid contribution 0.714 -0.237 0.470 0.887 sum -4.258 1.350 3.554 5.708 Atomic orbital electron populations 1.21739 0.96144 1.01256 1.00344 1.21158 0.94713 0.95857 0.99629 1.21875 1.01357 0.96259 1.00309 1.20848 1.03566 0.88346 0.89080 1.60631 1.07103 1.03259 1.50179 1.18132 0.93202 0.85783 0.88906 0.98412 1.20617 0.90827 1.51203 0.93746 0.92963 1.24837 0.95115 0.94696 0.96772 1.70543 1.29744 1.41911 1.00306 0.87299 0.87822 0.79157 0.77520 1.20479 1.21458 1.20531 1.20775 0.91401 0.99555 0.91544 1.21194 0.98352 0.93479 0.99711 1.21067 1.00888 0.95746 0.97210 1.20802 1.01188 0.98919 0.96548 1.20897 0.99764 0.94876 0.99338 1.20868 1.00720 0.94664 0.98237 1.23346 0.92517 1.00045 1.02617 1.22825 1.01005 0.99633 0.97596 0.93100 0.93062 0.93943 0.91445 0.92230 0.93034 0.94083 0.88542 0.94273 0.84913 0.87695 0.87897 0.87715 0.87278 0.91860 0.85132 0.89056 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.06 37.16 0.34 -1.74 16 2 C -0.09 -1.61 3.02 -90.62 -0.27 -1.88 16 3 C -0.14 -2.18 7.91 37.16 0.29 -1.89 16 4 C 0.07 1.48 1.59 -131.60 -0.21 1.27 16 5 N -0.58 -12.69 3.27 -95.46 -0.31 -13.00 16 6 C 0.25 5.72 2.57 -70.02 -0.18 5.54 16 7 H 0.00 -0.04 6.24 -51.93 -0.32 -0.36 16 8 C -0.53 -13.48 7.64 -34.44 -0.26 -13.75 16 9 H 0.05 1.39 7.87 -52.49 -0.41 0.97 16 10 C 0.09 2.40 3.80 -17.82 -0.07 2.33 16 11 N -0.79 -20.14 9.54 55.43 0.53 -19.61 16 12 Si 0.85 20.41 29.57 -169.99 -5.03 15.38 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 16 C -0.03 -0.69 5.05 -104.62 -0.53 -1.22 16 17 C -0.11 -2.30 8.96 -39.58 -0.35 -2.65 16 18 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 19 C -0.16 -2.77 10.05 -39.59 -0.40 -3.17 16 20 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 21 C -0.13 -2.59 9.67 -39.58 -0.38 -2.97 16 22 C -0.15 -3.12 8.21 -26.73 -0.22 -3.34 16 23 C -0.17 -3.32 9.53 -26.73 -0.25 -3.58 16 24 H 0.05 0.79 7.65 -51.93 -0.40 0.39 16 25 H 0.05 0.74 8.03 -51.93 -0.42 0.33 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.28 6.38 -51.93 -0.33 0.94 16 28 H 0.06 0.97 6.65 -51.93 -0.35 0.63 16 29 H 0.05 0.77 6.87 -51.93 -0.36 0.41 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.30 6.20 6.92 -39.29 -0.27 5.93 16 32 H 0.25 6.26 8.31 -40.82 -0.34 5.92 16 33 H 0.13 2.90 6.65 -52.49 -0.35 2.55 16 34 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 38 H 0.06 1.24 5.89 -51.93 -0.31 0.93 16 39 H 0.13 3.18 4.47 -51.93 -0.23 2.95 16 40 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 41 H 0.06 1.10 7.15 -51.93 -0.37 0.73 16 LS Contribution 316.59 15.07 4.77 4.77 Total: -1.00 -25.47 316.59 -9.54 -35.02 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -6.21 Total: 10.12 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: -3.30 Total: -32.68 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.22 Total: -32.61 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.47 -9.54 -35.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379467811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.764 kcal (2) G-P(sol) polarization free energy of solvation -25.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds