Wall clock time and date at job start Mon Mar 30 2020 07:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46895 * 2 1 4 4 C 1.52995 * 109.47105 * 239.99931 * 2 1 3 5 5 N 1.46900 * 115.54931 * 281.60062 * 4 2 1 6 6 C 1.46901 * 110.99955 * 294.40716 * 5 4 2 7 7 H 1.08998 * 109.46840 * 44.88862 * 6 5 4 8 8 C 1.50702 * 109.47362 * 284.89100 * 6 5 4 9 9 H 1.07997 * 120.00189 * 143.64316 * 8 6 5 10 10 C 1.37882 * 119.99931 * 323.64892 * 8 6 5 11 11 N 1.31514 * 119.99763 * 17.38771 * 10 8 6 12 12 Si 1.86796 * 120.00002 * 197.39225 * 10 8 6 13 13 H 1.48503 * 109.47109 * 59.99724 * 12 10 8 14 14 H 1.48501 * 109.47051 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47116 * 299.99628 * 12 10 8 16 16 C 1.50696 * 109.47132 * 164.89040 * 6 5 4 17 17 C 1.38238 * 119.99929 * 14.90349 * 16 6 5 18 18 C 1.38238 * 119.99705 * 179.81246 * 17 16 6 19 19 C 1.38230 * 119.99956 * 0.39356 * 18 17 16 20 20 C 1.38233 * 120.00352 * 359.85949 * 19 18 17 21 21 C 1.38235 * 119.99888 * 359.95804 * 20 19 18 22 22 C 1.52997 * 117.49858 * 135.88809 * 4 2 1 23 23 C 1.53001 * 60.00395 * 252.51056 * 22 4 2 24 24 H 1.08999 * 109.46960 * 175.00086 * 1 2 3 25 25 H 1.08997 * 109.47224 * 55.00065 * 1 2 3 26 26 H 1.09005 * 109.46823 * 295.00257 * 1 2 3 27 27 H 1.09003 * 109.46989 * 119.99953 * 2 1 3 28 28 H 1.08997 * 109.46972 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47264 * 299.99785 * 3 2 1 30 30 H 1.09004 * 109.47271 * 60.00093 * 3 2 1 31 31 H 1.00900 * 111.00635 * 58.36578 * 5 4 2 32 32 H 0.96998 * 119.99805 * 180.02562 * 11 10 8 33 33 H 1.07991 * 120.00190 * 359.97438 * 17 16 6 34 34 H 1.08002 * 120.00239 * 180.23179 * 18 17 16 35 35 H 1.08003 * 119.99957 * 179.83622 * 19 18 17 36 36 H 1.08002 * 120.00237 * 179.97438 * 20 19 18 37 37 H 1.08005 * 120.00126 * 180.02562 * 21 20 19 38 38 H 1.08999 * 117.50188 * 359.97438 * 22 4 2 39 39 H 1.08998 * 117.49722 * 145.01874 * 22 4 2 40 40 H 1.08993 * 117.50026 * 252.51414 * 23 22 4 41 41 H 1.09004 * 117.49383 * 107.48757 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0000 -2.1887 -1.1943 6 6 2.9222 -2.7026 -0.1729 7 1 2.8177 -2.1155 0.7395 8 6 4.3386 -2.5992 -0.6772 9 1 5.1382 -2.3521 0.0054 10 6 4.6137 -2.8199 -2.0101 11 7 3.6433 -2.7809 -2.8970 12 14 6.3645 -3.1745 -2.5563 13 1 6.8547 -4.4027 -1.8806 14 1 6.3933 -3.3732 -4.0276 15 1 7.2373 -2.0287 -2.1949 16 6 2.5966 -4.1450 0.1178 17 6 1.7838 -4.8573 -0.7441 18 6 1.4883 -6.1816 -0.4795 19 6 1.9989 -6.7910 0.6513 20 6 2.8075 -6.0772 1.5159 21 6 3.1061 -4.7541 1.2493 22 6 3.1942 -0.0738 -2.0170 23 6 1.7811 -0.0576 -2.6033 24 1 -0.3633 -1.0238 -0.0896 25 1 -0.3633 0.5894 -0.8418 26 1 -0.3633 0.4344 0.9314 27 1 1.8934 -0.5138 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.0605 -2.5190 -1.0322 32 1 3.8367 -2.9366 -3.8346 33 1 1.3818 -4.3801 -1.6255 34 1 0.8563 -6.7392 -1.1547 35 1 1.7659 -7.8249 0.8594 36 1 3.2061 -6.5533 2.3996 37 1 3.7382 -4.1965 1.9246 38 1 3.5899 0.8662 -1.6325 39 1 3.9242 -0.7367 -2.4815 40 1 1.5814 -0.7099 -3.4534 41 1 1.2474 0.8928 -2.6041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379467811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:08 Heat of formation + Delta-G solvation = 61.024293 kcal Electronic energy + Delta-G solvation = -20342.976946 eV Core-core repulsion = 17609.831581 eV Total energy + Delta-G solvation = -2733.145365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31653 -39.30658 -35.77778 -33.56903 -33.19037 -31.58197 -30.70842 -28.29180 -27.58672 -24.53009 -23.67035 -22.85892 -22.66303 -21.49059 -19.20811 -18.01462 -17.52550 -16.86083 -16.68387 -15.81254 -15.68384 -15.24658 -14.97521 -14.63514 -14.40605 -13.96112 -13.70449 -13.64918 -13.45098 -13.09347 -12.88586 -12.81254 -12.64102 -12.30031 -12.14063 -11.95684 -11.83917 -11.64265 -11.60188 -11.47285 -11.09396 -10.81678 -10.05879 -9.86553 -9.54748 -9.20076 -8.58837 -7.51096 -5.92163 0.76945 0.84095 1.40642 1.45143 1.49212 2.53418 3.18283 3.35633 3.41772 3.81083 4.07694 4.19270 4.31074 4.33643 4.38268 4.45671 4.61717 4.63372 4.73500 4.84267 4.88018 4.94861 5.00366 5.05721 5.06761 5.15201 5.16819 5.25230 5.35093 5.44845 5.46071 5.51882 5.56153 5.73130 5.82889 5.87828 5.90617 6.09937 6.16044 6.34927 6.47893 6.68045 7.20253 7.43314 7.70654 9.14018 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014967 B = 0.009902 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.275462 B = 2827.077713 C = 3988.693576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.135 4.135 4 C 0.069 3.931 5 N -0.592 5.592 6 C 0.255 3.745 7 H -0.018 1.018 8 C -0.541 4.541 9 H 0.031 0.969 10 C 0.073 3.927 11 N -0.795 5.795 12 Si 0.893 3.107 13 H -0.288 1.288 14 H -0.287 1.287 15 H -0.281 1.281 16 C -0.057 4.057 17 C -0.124 4.124 18 C -0.133 4.133 19 C -0.149 4.149 20 C -0.128 4.128 21 C -0.145 4.145 22 C -0.167 4.167 23 C -0.152 4.152 24 H 0.041 0.959 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.300 0.700 32 H 0.241 0.759 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 1.120 4.420 8.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.111 4.111 3 C -0.192 4.192 4 C -0.023 4.023 5 N -0.219 5.219 6 C 0.147 3.853 7 H -0.001 1.001 8 C -0.579 4.579 9 H 0.049 0.951 10 C -0.135 4.135 11 N -0.428 5.428 12 Si 0.721 3.279 13 H -0.215 1.215 14 H -0.213 1.213 15 H -0.207 1.207 16 C -0.058 4.058 17 C -0.142 4.142 18 C -0.151 4.151 19 C -0.167 4.167 20 C -0.146 4.146 21 C -0.164 4.164 22 C -0.204 4.204 23 C -0.190 4.190 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.052 0.948 33 H 0.135 0.865 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.205 1.004 3.661 7.274 hybrid contribution 1.095 -0.102 0.335 1.149 sum -5.111 0.902 3.996 6.550 Atomic orbital electron populations 1.21673 0.94062 1.01161 1.01865 1.21101 0.96398 0.96465 0.97109 1.21814 1.00415 0.95102 1.01901 1.21043 1.02963 0.87776 0.90554 1.60487 1.06996 1.04667 1.49788 1.17928 0.92322 0.86792 0.88273 1.00055 1.20678 0.91758 1.51817 0.93664 0.95057 1.25084 0.96725 0.94874 0.96788 1.70629 1.30135 1.42138 0.99868 0.86709 0.85855 0.78306 0.77033 1.21475 1.21264 1.20687 1.20721 0.93133 0.98946 0.92997 1.21132 0.99009 0.94775 0.99286 1.21380 1.00805 0.94819 0.98078 1.21248 0.99587 1.00511 0.95346 1.21268 0.99083 0.93818 1.00387 1.21029 1.01205 0.96091 0.98061 1.23227 0.92782 1.00319 1.04054 1.22748 0.99587 1.00263 0.96389 0.93969 0.91993 0.91972 0.93622 0.93689 0.91959 0.91905 0.88212 0.94822 0.86452 0.85120 0.84104 0.84523 0.87550 0.90596 0.88380 0.90895 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.06 71.98 0.65 -3.05 16 2 C -0.09 -3.07 3.02 -10.79 -0.03 -3.10 16 3 C -0.13 -3.96 7.91 71.98 0.57 -3.40 16 4 C 0.07 2.77 1.59 3.53 0.01 2.78 16 5 N -0.59 -26.34 3.27 -455.93 -1.49 -27.83 16 6 C 0.26 12.20 2.57 43.42 0.11 12.31 16 7 H -0.02 -0.88 6.24 -2.39 -0.01 -0.90 16 8 C -0.54 -28.75 7.64 25.60 0.20 -28.56 16 9 H 0.03 1.74 7.87 -2.91 -0.02 1.72 16 10 C 0.07 3.81 3.80 84.66 0.32 4.13 16 11 N -0.80 -41.34 9.54 21.45 0.20 -41.14 16 12 Si 0.89 42.77 29.57 68.60 2.03 44.80 16 13 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 14 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 15 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 16 C -0.06 -2.54 5.05 -19.87 -0.10 -2.64 16 17 C -0.12 -5.20 8.96 22.27 0.20 -5.00 16 18 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 19 C -0.15 -4.77 10.05 22.27 0.22 -4.55 16 20 C -0.13 -4.34 10.05 22.27 0.22 -4.12 16 21 C -0.15 -5.92 9.67 22.27 0.22 -5.70 16 22 C -0.17 -7.11 8.21 30.59 0.25 -6.85 16 23 C -0.15 -5.76 9.53 30.60 0.29 -5.47 16 24 H 0.04 1.26 7.65 -2.39 -0.02 1.24 16 25 H 0.06 1.63 8.03 -2.39 -0.02 1.61 16 26 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.05 1.75 6.38 -2.39 -0.02 1.74 16 28 H 0.04 1.44 6.65 -2.39 -0.02 1.42 16 29 H 0.06 1.69 6.87 -2.39 -0.02 1.67 16 30 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.30 12.84 6.92 -89.69 -0.62 12.22 16 32 H 0.24 12.50 8.31 -92.71 -0.77 11.73 16 33 H 0.12 5.22 6.65 -2.92 -0.02 5.20 16 34 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 35 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 36 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 38 H 0.08 2.98 5.89 -2.39 -0.01 2.97 16 39 H 0.10 4.92 4.47 -2.39 -0.01 4.90 16 40 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.09 2.96 7.15 -2.39 -0.02 2.94 16 Total: -1.00 -55.59 316.59 4.49 -51.10 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.39 Total: 30.75 kcal Atomic # 6 Polarization: -61.04 SS G_CDS: 3.35 Total: -57.69 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -1.29 Total: -68.97 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -55.59 4.49 -51.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379467811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.129 kcal (2) G-P(sol) polarization free energy of solvation -55.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds