Wall clock time and date at job start Mon Mar 30 2020 06:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47028 * 2 1 4 4 C 1.52997 * 113.25855 * 47.05021 * 3 2 1 5 5 C 1.53516 * 114.17011 * 180.02562 * 3 2 1 6 6 N 1.47481 * 87.93021 * 87.62365 * 5 3 2 7 7 C 1.46901 * 110.99940 * 138.70179 * 6 5 3 8 8 H 1.09002 * 109.47002 * 54.91009 * 7 6 5 9 9 C 1.50694 * 109.47194 * 294.90959 * 7 6 5 10 10 H 1.07998 * 120.00188 * 294.81906 * 9 7 6 11 11 C 1.37881 * 120.00174 * 114.82565 * 9 7 6 12 12 N 1.31515 * 119.99918 * 354.88739 * 11 9 7 13 13 Si 1.86797 * 119.99979 * 174.88429 * 11 9 7 14 14 H 1.48497 * 109.47245 * 90.00185 * 13 11 9 15 15 H 1.48507 * 109.47115 * 209.99664 * 13 11 9 16 16 H 1.48494 * 109.47377 * 330.00083 * 13 11 9 17 17 C 1.50701 * 109.47281 * 174.90503 * 7 6 5 18 18 C 1.38237 * 120.00415 * 220.05470 * 17 7 6 19 19 C 1.38232 * 119.99829 * 180.02562 * 18 17 7 20 20 C 1.38234 * 120.00342 * 359.95220 * 19 18 17 21 21 C 1.38238 * 119.99861 * 0.28313 * 20 19 18 22 22 C 1.38231 * 119.99951 * 359.52970 * 21 20 19 23 23 C 1.47476 * 87.83681 * 27.01172 * 6 5 3 24 24 H 1.08994 * 109.46714 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46888 * 299.99843 * 1 2 3 26 26 H 1.08999 * 109.47105 * 59.99895 * 1 2 3 27 27 H 1.09004 * 109.46888 * 240.00156 * 2 1 3 28 28 H 1.08999 * 109.47105 * 120.00105 * 2 1 3 29 29 H 1.08998 * 109.47482 * 192.94894 * 4 3 2 30 30 H 1.09003 * 109.47229 * 312.95038 * 4 3 2 31 31 H 1.09002 * 109.47126 * 72.94768 * 4 3 2 32 32 H 1.08994 * 113.47896 * 332.85490 * 5 3 2 33 33 H 1.09001 * 113.52877 * 202.39676 * 5 3 2 34 34 H 0.97003 * 120.00071 * 179.97438 * 12 11 9 35 35 H 1.07998 * 119.99595 * 0.02562 * 18 17 7 36 36 H 1.08001 * 119.99576 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.99732 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.99834 * 179.72705 * 21 20 19 39 39 H 1.08003 * 120.00127 * 180.21529 * 22 21 20 40 40 H 1.09000 * 113.47711 * 87.75914 * 23 6 5 41 41 H 1.09005 * 113.47848 * 218.22253 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3384 2.3313 1.0289 5 6 3.5700 1.5683 -0.0006 6 7 3.5213 1.5032 -1.4732 7 6 4.4561 2.4641 -2.0738 8 1 5.4571 2.2936 -1.6774 9 6 4.0168 3.8669 -1.7420 10 1 3.0815 4.2452 -2.1274 11 6 4.8088 4.6675 -0.9465 12 7 5.8968 4.1757 -0.3951 13 14 4.3366 6.4506 -0.6520 14 1 3.4691 6.5410 0.5498 15 1 5.5639 7.2589 -0.4384 16 1 3.6014 6.9696 -1.8332 17 6 4.4708 2.2829 -3.5698 18 6 5.6636 2.3615 -4.2640 19 6 5.6769 2.1957 -5.6363 20 6 4.4975 1.9503 -6.3143 21 6 3.3040 1.8765 -5.6207 22 6 3.2912 2.0384 -4.2480 23 6 2.1605 2.0666 -1.3973 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5736 3.3763 0.8269 30 1 0.2607 2.1822 0.9631 31 1 1.6811 2.0687 2.0297 32 1 4.0759 0.7172 0.4551 33 1 3.9282 2.5248 0.3801 34 1 6.4542 4.7390 0.1642 35 1 6.5851 2.5525 -3.7341 36 1 6.6088 2.2576 -6.1786 37 1 4.5080 1.8204 -7.3864 38 1 2.3820 1.6892 -6.1510 39 1 2.3592 1.9773 -3.7056 40 1 2.1416 3.1564 -1.3893 41 1 1.4718 1.6378 -2.1253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381911016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:15 Heat of formation + Delta-G solvation = 55.484574 kcal Electronic energy + Delta-G solvation = -20103.667493 eV Core-core repulsion = 17370.281908 eV Total energy + Delta-G solvation = -2733.385585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87616 -38.05305 -34.37160 -32.31682 -30.93723 -30.06657 -28.70120 -26.88055 -25.12276 -24.58903 -23.09500 -21.68501 -21.23356 -19.48871 -17.58156 -16.57414 -15.84539 -15.11506 -14.73569 -14.57688 -14.27194 -13.95745 -13.72214 -13.29996 -12.87921 -12.52446 -12.30364 -12.03326 -11.93464 -11.74801 -11.54392 -11.42541 -11.14710 -11.04719 -10.79466 -10.64803 -10.30807 -10.26588 -10.11641 -9.82563 -9.30208 -9.24018 -9.02378 -8.72161 -8.10269 -7.85823 -7.37502 -6.21567 -4.31017 2.23518 2.29957 3.17261 3.25832 3.29988 4.24841 4.68444 5.06180 5.11676 5.27589 5.43210 5.58648 5.61944 5.67905 5.77224 5.85899 5.90438 6.06571 6.12401 6.24776 6.29473 6.32853 6.36651 6.44388 6.50722 6.58015 6.60012 6.70750 6.79908 6.85299 6.88838 6.95656 7.01961 7.10144 7.26302 7.29597 7.39581 7.62263 7.65069 7.80110 7.94267 8.09118 8.43949 8.82962 9.34345 10.80513 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.010023 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.839157 B = 2792.919074 C = 4330.852819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.102 4.102 4 C -0.134 4.134 5 C 0.028 3.972 6 N -0.480 5.480 7 C 0.185 3.815 8 H 0.086 0.914 9 C -0.530 4.530 10 H 0.062 0.938 11 C 0.077 3.923 12 N -0.880 5.880 13 Si 0.887 3.113 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.272 1.272 17 C -0.014 4.014 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.155 4.155 21 C -0.130 4.130 22 C -0.119 4.119 23 C 0.007 3.993 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.266 0.734 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 -4.492 -1.602 7.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.127 4.127 3 C -0.103 4.103 4 C -0.192 4.192 5 C -0.101 4.101 6 N -0.202 5.202 7 C 0.078 3.922 8 H 0.104 0.896 9 C -0.568 4.568 10 H 0.080 0.920 11 C -0.128 4.128 12 N -0.517 5.517 13 Si 0.714 3.286 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.015 4.015 18 C -0.143 4.143 19 C -0.144 4.144 20 C -0.173 4.173 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.121 4.121 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.640 -5.072 -1.862 7.810 hybrid contribution -0.111 1.936 0.402 1.980 sum -5.751 -3.137 -1.460 6.711 Atomic orbital electron populations 1.21815 0.96816 1.00452 1.01599 1.21148 0.94557 0.95312 1.01674 1.22030 0.96694 0.94821 0.96747 1.21734 0.99516 0.99710 0.98194 1.23587 0.93079 1.01721 0.91731 1.69107 1.02658 1.40686 1.07777 1.19071 0.96605 0.90239 0.86258 0.89627 1.21297 1.06041 0.98517 1.30988 0.91976 1.24992 0.94675 0.98345 0.94768 1.69889 1.14317 1.36214 1.31250 0.86655 0.78258 0.84856 0.78790 1.20358 1.20965 1.19636 1.20427 0.91850 0.91161 0.98061 1.21016 0.98302 1.01258 0.93687 1.20954 0.97331 1.01509 0.94634 1.20811 0.93181 1.04660 0.98633 1.21001 0.97111 1.01888 0.94775 1.21126 0.98734 1.00478 0.93370 1.24084 0.92956 1.01368 0.93740 0.93687 0.92803 0.92922 0.91288 0.92877 0.92455 0.93000 0.93413 0.92924 0.89089 0.92401 0.86766 0.87478 0.87686 0.87626 0.86440 0.88288 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.27 37.16 0.34 -1.60 16 2 C -0.09 -1.37 5.51 -26.73 -0.15 -1.52 16 3 C -0.10 -1.80 1.17 -153.98 -0.18 -1.98 16 4 C -0.13 -2.15 8.96 37.16 0.33 -1.82 16 5 C 0.03 0.58 6.73 -7.55 -0.05 0.53 16 6 N -0.48 -10.38 5.85 -239.36 -1.40 -11.78 16 7 C 0.18 4.41 2.39 -70.02 -0.17 4.24 16 8 H 0.09 2.31 6.81 -51.93 -0.35 1.96 16 9 C -0.53 -13.27 5.66 -34.44 -0.19 -13.46 16 10 H 0.06 1.58 6.37 -52.49 -0.33 1.25 16 11 C 0.08 1.97 4.90 -17.82 -0.09 1.88 16 12 N -0.88 -23.37 12.44 55.43 0.69 -22.68 16 13 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C -0.01 -0.31 4.94 -104.62 -0.52 -0.83 16 18 C -0.12 -2.63 9.67 -39.58 -0.38 -3.01 16 19 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 20 C -0.15 -2.69 10.05 -39.58 -0.40 -3.08 16 21 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 22 C -0.12 -2.44 9.24 -39.58 -0.37 -2.81 16 23 C 0.01 0.14 5.04 -7.55 -0.04 0.10 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.66 6.35 -51.93 -0.33 0.33 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.14 7.92 -51.93 -0.41 0.73 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 30 H 0.05 0.73 5.96 -51.93 -0.31 0.42 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 1.07 8.12 -51.93 -0.42 0.65 16 33 H 0.09 2.16 6.43 -51.93 -0.33 1.83 16 34 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.11 2.43 8.04 -52.49 -0.42 2.01 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.12 2.36 5.12 -52.48 -0.27 2.09 16 40 H 0.10 2.15 4.65 -51.93 -0.24 1.91 16 41 H 0.05 0.97 6.91 -51.93 -0.36 0.61 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -25.82 318.42 -9.87 -35.69 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.29 Total: 7.65 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: -2.65 Total: -28.80 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: -0.71 Total: -34.47 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -25.82 -9.87 -35.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381911016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.173 kcal (2) G-P(sol) polarization free energy of solvation -25.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds