Wall clock time and date at job start Mon Mar 30 2020 06:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47028 * 2 1 4 4 C 1.52997 * 113.25855 * 47.05021 * 3 2 1 5 5 C 1.53516 * 114.17011 * 180.02562 * 3 2 1 6 6 N 1.47481 * 87.93021 * 87.62365 * 5 3 2 7 7 C 1.46901 * 110.99940 * 138.70179 * 6 5 3 8 8 H 1.09002 * 109.47002 * 54.91009 * 7 6 5 9 9 C 1.50694 * 109.47194 * 294.90959 * 7 6 5 10 10 H 1.07998 * 120.00188 * 294.81906 * 9 7 6 11 11 C 1.37881 * 120.00174 * 114.82565 * 9 7 6 12 12 N 1.31515 * 119.99918 * 354.88739 * 11 9 7 13 13 Si 1.86797 * 119.99979 * 174.88429 * 11 9 7 14 14 H 1.48497 * 109.47245 * 90.00185 * 13 11 9 15 15 H 1.48507 * 109.47115 * 209.99664 * 13 11 9 16 16 H 1.48494 * 109.47377 * 330.00083 * 13 11 9 17 17 C 1.50701 * 109.47281 * 174.90503 * 7 6 5 18 18 C 1.38237 * 120.00415 * 220.05470 * 17 7 6 19 19 C 1.38232 * 119.99829 * 180.02562 * 18 17 7 20 20 C 1.38234 * 120.00342 * 359.95220 * 19 18 17 21 21 C 1.38238 * 119.99861 * 0.28313 * 20 19 18 22 22 C 1.38231 * 119.99951 * 359.52970 * 21 20 19 23 23 C 1.47476 * 87.83681 * 27.01172 * 6 5 3 24 24 H 1.08994 * 109.46714 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46888 * 299.99843 * 1 2 3 26 26 H 1.08999 * 109.47105 * 59.99895 * 1 2 3 27 27 H 1.09004 * 109.46888 * 240.00156 * 2 1 3 28 28 H 1.08999 * 109.47105 * 120.00105 * 2 1 3 29 29 H 1.08998 * 109.47482 * 192.94894 * 4 3 2 30 30 H 1.09003 * 109.47229 * 312.95038 * 4 3 2 31 31 H 1.09002 * 109.47126 * 72.94768 * 4 3 2 32 32 H 1.08994 * 113.47896 * 332.85490 * 5 3 2 33 33 H 1.09001 * 113.52877 * 202.39676 * 5 3 2 34 34 H 0.97003 * 120.00071 * 179.97438 * 12 11 9 35 35 H 1.07998 * 119.99595 * 0.02562 * 18 17 7 36 36 H 1.08001 * 119.99576 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.99732 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.99834 * 179.72705 * 21 20 19 39 39 H 1.08003 * 120.00127 * 180.21529 * 22 21 20 40 40 H 1.09000 * 113.47711 * 87.75914 * 23 6 5 41 41 H 1.09005 * 113.47848 * 218.22253 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3384 2.3313 1.0289 5 6 3.5700 1.5683 -0.0006 6 7 3.5213 1.5032 -1.4732 7 6 4.4561 2.4641 -2.0738 8 1 5.4571 2.2936 -1.6774 9 6 4.0168 3.8669 -1.7420 10 1 3.0815 4.2452 -2.1274 11 6 4.8088 4.6675 -0.9465 12 7 5.8968 4.1757 -0.3951 13 14 4.3366 6.4506 -0.6520 14 1 3.4691 6.5410 0.5498 15 1 5.5639 7.2589 -0.4384 16 1 3.6014 6.9696 -1.8332 17 6 4.4708 2.2829 -3.5698 18 6 5.6636 2.3615 -4.2640 19 6 5.6769 2.1957 -5.6363 20 6 4.4975 1.9503 -6.3143 21 6 3.3040 1.8765 -5.6207 22 6 3.2912 2.0384 -4.2480 23 6 2.1605 2.0666 -1.3973 24 1 -0.3632 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5736 3.3763 0.8269 30 1 0.2607 2.1822 0.9631 31 1 1.6811 2.0687 2.0297 32 1 4.0759 0.7172 0.4551 33 1 3.9282 2.5248 0.3801 34 1 6.4542 4.7390 0.1642 35 1 6.5851 2.5525 -3.7341 36 1 6.6088 2.2576 -6.1786 37 1 4.5080 1.8204 -7.3864 38 1 2.3820 1.6892 -6.1510 39 1 2.3592 1.9773 -3.7056 40 1 2.1416 3.1564 -1.3893 41 1 1.4718 1.6378 -2.1253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381911016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:15 Heat of formation + Delta-G solvation = 41.820893 kcal Electronic energy + Delta-G solvation = -20104.259994 eV Core-core repulsion = 17370.281908 eV Total energy + Delta-G solvation = -2733.978087 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50880 -39.56976 -35.97946 -34.06362 -32.46994 -31.57969 -30.05249 -28.60106 -26.80872 -26.27097 -24.51398 -23.18579 -22.73502 -21.20709 -19.15630 -18.34088 -17.47541 -16.86516 -16.24133 -16.16431 -15.88407 -15.30843 -15.24622 -14.84934 -14.38810 -14.02812 -13.85806 -13.73519 -13.38520 -13.35999 -13.01787 -12.89743 -12.71290 -12.62581 -12.30390 -12.10875 -11.89451 -11.82314 -11.63685 -11.39757 -11.07564 -10.82529 -10.72492 -10.57955 -9.62624 -9.45980 -9.13785 -8.16422 -6.31928 0.70186 0.77134 1.33967 1.37168 1.45478 2.34515 3.00379 3.23388 3.62444 3.68982 4.09993 4.18980 4.28552 4.32009 4.40771 4.49998 4.56767 4.63406 4.81655 4.85990 4.87306 4.95938 4.97416 5.06364 5.07957 5.13935 5.18815 5.19737 5.23601 5.32755 5.34140 5.46635 5.52633 5.55244 5.66057 5.75666 5.76934 5.80920 5.95613 6.01630 6.26249 6.39235 6.60679 6.88727 7.34998 8.83955 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.010023 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.839157 B = 2792.919074 C = 4330.852819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.131 4.131 5 C 0.020 3.980 6 N -0.483 5.483 7 C 0.193 3.807 8 H 0.042 0.958 9 C -0.526 4.526 10 H 0.055 0.945 11 C 0.034 3.966 12 N -0.911 5.911 13 Si 0.941 3.059 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.271 1.271 17 C -0.046 4.046 18 C -0.150 4.150 19 C -0.123 4.123 20 C -0.145 4.145 21 C -0.125 4.125 22 C -0.132 4.132 23 C 0.012 3.988 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.166 -5.109 -3.100 10.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.188 4.188 5 C -0.109 4.109 6 N -0.205 5.205 7 C 0.086 3.914 8 H 0.060 0.940 9 C -0.565 4.565 10 H 0.073 0.927 11 C -0.168 4.168 12 N -0.549 5.549 13 Si 0.767 3.233 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.047 4.047 18 C -0.169 4.169 19 C -0.141 4.141 20 C -0.163 4.163 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.117 4.117 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.159 0.841 39 H 0.134 0.866 40 H 0.095 0.905 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.834 -5.692 -3.361 10.250 hybrid contribution 0.588 2.048 0.779 2.268 sum -7.245 -3.644 -2.582 8.512 Atomic orbital electron populations 1.21772 0.94339 1.01932 1.02061 1.21121 0.96618 0.93082 1.01489 1.22019 0.93995 0.96683 0.95628 1.21709 1.01072 0.97990 0.98022 1.23537 0.96135 0.99852 0.91415 1.69073 1.03353 1.40107 1.07950 1.18790 0.94711 0.90147 0.87756 0.94011 1.21399 1.05588 0.99148 1.30381 0.92657 1.25605 0.94757 1.01528 0.94868 1.70016 1.15385 1.37186 1.32299 0.85809 0.77843 0.80943 0.78715 1.19607 1.21047 1.19599 1.20399 0.93399 0.93729 0.97194 1.21062 0.97330 1.03096 0.95409 1.21281 0.99415 1.00111 0.93292 1.21297 0.92110 1.02230 1.00651 1.21402 0.99075 1.00159 0.93692 1.21184 0.97756 1.01244 0.94837 1.23954 0.91985 1.00045 0.95674 0.91797 0.91671 0.93071 0.92665 0.91959 0.94505 0.90209 0.92413 0.93180 0.92400 0.92670 0.88660 0.84560 0.83508 0.84130 0.86609 0.90544 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.27 71.98 0.67 -2.60 16 2 C -0.09 -2.48 5.51 30.60 0.17 -2.31 16 3 C -0.08 -2.87 1.17 -51.84 -0.06 -2.93 16 4 C -0.13 -4.04 8.96 71.98 0.65 -3.39 16 5 C 0.02 0.87 6.73 83.57 0.56 1.43 16 6 N -0.48 -21.71 5.85 -911.21 -5.33 -27.04 16 7 C 0.19 9.74 2.39 43.42 0.10 9.85 16 8 H 0.04 2.44 6.81 -2.39 -0.02 2.42 16 9 C -0.53 -27.58 5.66 25.60 0.14 -27.44 16 10 H 0.06 2.93 6.37 -2.91 -0.02 2.91 16 11 C 0.03 1.81 4.90 84.66 0.41 2.22 16 12 N -0.91 -51.13 12.44 21.45 0.27 -50.86 16 13 Si 0.94 42.56 29.54 68.60 2.03 44.58 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 C -0.05 -2.14 4.94 -19.86 -0.10 -2.24 16 18 C -0.15 -6.54 9.67 22.27 0.22 -6.32 16 19 C -0.12 -4.29 10.05 22.27 0.22 -4.07 16 20 C -0.15 -4.50 10.05 22.27 0.22 -4.28 16 21 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 22 C -0.13 -5.34 9.24 22.27 0.21 -5.14 16 23 C 0.01 0.48 5.04 83.57 0.42 0.90 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.34 6.35 -2.38 -0.02 1.33 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.76 7.92 -2.38 -0.02 1.74 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.28 7.91 -2.39 -0.02 1.26 16 30 H 0.08 2.02 5.96 -2.39 -0.01 2.01 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 2.14 8.12 -2.39 -0.02 2.12 16 33 H 0.06 2.92 6.43 -2.39 -0.02 2.91 16 34 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.10 4.36 8.04 -2.91 -0.02 4.34 16 36 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 37 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 39 H 0.12 4.61 5.12 -2.91 -0.01 4.59 16 40 H 0.08 3.42 4.65 -2.39 -0.01 3.40 16 41 H 0.06 2.39 6.91 -2.38 -0.02 2.37 16 Total: -1.00 -58.86 318.42 2.02 -56.84 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 1.00 Total: 26.73 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 4.06 Total: -50.25 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -5.07 Total: -77.90 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -58.86 2.02 -56.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381911016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.663 kcal (2) G-P(sol) polarization free energy of solvation -58.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds