Wall clock time and date at job start Mon Mar 30 2020 07:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00482 * 2 1 4 4 C 1.53008 * 109.46914 * 0.02562 * 3 2 1 5 5 C 1.53008 * 109.47326 * 240.00245 * 3 2 1 6 6 C 1.53003 * 109.47350 * 120.00104 * 3 2 1 7 7 N 1.46901 * 109.47274 * 180.02562 * 6 3 2 8 8 C 1.46893 * 111.00152 * 179.97438 * 7 6 3 9 9 H 1.09006 * 109.46705 * 35.00659 * 8 7 6 10 10 C 1.50696 * 109.47339 * 275.00224 * 8 7 6 11 11 H 1.08004 * 119.99979 * 122.44143 * 10 8 7 12 12 C 1.37878 * 119.99760 * 302.16409 * 10 8 7 13 13 N 1.31511 * 120.00357 * 6.21866 * 12 10 8 14 14 Si 1.86800 * 119.99659 * 186.21862 * 12 10 8 15 15 H 1.48503 * 109.47398 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47127 * 120.00206 * 14 12 10 17 17 H 1.48498 * 109.47192 * 239.99876 * 14 12 10 18 18 C 1.50704 * 109.46972 * 154.99606 * 8 7 6 19 19 C 1.38237 * 119.99679 * 30.25810 * 18 8 7 20 20 C 1.38239 * 119.99427 * 179.80999 * 19 18 8 21 21 C 1.38234 * 120.00151 * 0.38663 * 20 19 18 22 22 C 1.38231 * 120.00100 * 359.86452 * 21 20 19 23 23 C 1.38234 * 119.99953 * 359.95077 * 22 21 20 24 24 H 1.08000 * 119.99800 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00585 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99800 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47072 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.46748 * 299.99916 * 4 3 2 29 29 H 1.08996 * 109.46882 * 59.99828 * 4 3 2 30 30 H 1.08997 * 109.46963 * 300.00087 * 5 3 2 31 31 H 1.08999 * 109.46678 * 59.99991 * 5 3 2 32 32 H 1.08994 * 109.46787 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46902 * 59.99936 * 6 3 2 34 34 H 1.08995 * 109.46898 * 299.99944 * 6 3 2 35 35 H 1.00903 * 110.99576 * 56.04321 * 7 6 3 36 36 H 0.96993 * 120.00430 * 179.97438 * 13 12 10 37 37 H 1.07994 * 119.99898 * 359.97438 * 19 18 8 38 38 H 1.08004 * 119.99684 * 180.23196 * 20 19 18 39 39 H 1.08003 * 119.99548 * 179.83698 * 21 20 19 40 40 H 1.07998 * 119.99774 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.99847 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9432 1.3860 -1.2493 6 6 2.9432 1.3860 1.2492 7 7 3.6774 2.6584 1.2495 8 6 4.5340 2.7717 2.4374 9 1 4.9260 1.7885 2.6977 10 6 3.7264 3.3117 3.5895 11 1 3.6492 2.7466 4.5066 12 6 3.0909 4.5299 3.4747 13 7 3.0866 5.1634 2.3222 14 14 2.2359 5.2805 4.9563 15 1 2.3851 4.3762 6.1247 16 1 2.8496 6.5964 5.2678 17 1 0.7939 5.4660 4.6542 18 6 5.6786 3.7071 2.1440 19 6 5.5107 4.7441 1.2454 20 6 6.5594 5.6045 0.9793 21 6 7.7783 5.4231 1.6056 22 6 7.9477 4.3831 2.5003 23 6 6.8978 3.5250 2.7694 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9352 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.6144 3.4120 0.0002 28 1 0.4424 2.4105 -0.8891 29 1 0.4430 2.4101 0.8908 30 1 3.6514 0.5575 -1.2494 31 1 2.3165 1.3284 -2.1392 32 1 3.4879 2.3301 -1.2495 33 1 3.6515 0.5575 1.2492 34 1 2.3166 1.3283 2.1392 35 1 3.0440 3.4413 1.1847 36 1 2.6392 6.0201 2.2413 37 1 4.5595 4.8836 0.7534 38 1 6.4272 6.4169 0.2800 39 1 8.5984 6.0938 1.3956 40 1 8.9001 4.2412 2.9893 41 1 7.0300 2.7126 3.4686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384814704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:23 Heat of formation + Delta-G solvation = 39.249814 kcal Electronic energy + Delta-G solvation = -19901.570596 eV Core-core repulsion = 17167.481019 eV Total energy + Delta-G solvation = -2734.089577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.39013 -37.60071 -34.82423 -31.90436 -30.68953 -29.73285 -29.19066 -26.78988 -26.50369 -24.58160 -22.59165 -21.44048 -20.60978 -19.74166 -17.63610 -16.60176 -15.97853 -15.16838 -15.02677 -14.19168 -14.11088 -13.78740 -13.62673 -13.15876 -12.78882 -12.50611 -12.21900 -11.85363 -11.73788 -11.65765 -11.48233 -11.20229 -11.02524 -10.97973 -10.77750 -10.51443 -10.43679 -10.14952 -10.01799 -9.84548 -9.58776 -9.50464 -8.95560 -8.70188 -7.77870 -7.40167 -6.96237 -6.06223 -4.30620 2.54183 2.62812 2.65844 3.19432 3.28994 3.32364 4.29317 4.99552 5.11658 5.16308 5.34630 5.55759 5.70416 5.81083 5.85094 5.89447 6.00405 6.10307 6.12961 6.20025 6.35581 6.44279 6.48314 6.59443 6.63604 6.76607 6.77486 6.80481 6.87179 6.90114 6.95093 7.09787 7.18389 7.21509 7.33261 7.56350 7.65923 7.81927 8.01983 8.08039 8.27585 8.46231 8.86238 9.19009 9.44469 10.79212 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.007994 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.342843 B = 3501.790599 C = 4569.047097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.129 4.129 3 C -0.038 4.038 4 C -0.141 4.141 5 C -0.123 4.123 6 C 0.083 3.917 7 N -0.688 5.688 8 C 0.237 3.763 9 H 0.033 0.967 10 C -0.538 4.538 11 H 0.057 0.943 12 C 0.075 3.925 13 N -0.878 5.878 14 Si 0.890 3.110 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.283 1.283 18 C -0.018 4.018 19 C -0.057 4.057 20 C -0.148 4.148 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.135 4.135 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.023 0.977 35 H 0.370 0.630 36 H 0.266 0.734 37 H 0.146 0.854 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -4.094 -4.909 6.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.148 4.148 3 C -0.039 4.039 4 C -0.198 4.198 5 C -0.180 4.180 6 C -0.047 4.047 7 N -0.327 5.327 8 C 0.128 3.872 9 H 0.051 0.949 10 C -0.577 4.577 11 H 0.075 0.925 12 C -0.128 4.128 13 N -0.517 5.517 14 Si 0.718 3.282 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.019 4.019 19 C -0.076 4.076 20 C -0.166 4.166 21 C -0.172 4.172 22 C -0.162 4.162 23 C -0.154 4.154 24 H 0.120 0.880 25 H 0.106 0.894 26 H 0.120 0.880 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.198 0.802 36 H 0.077 0.923 37 H 0.163 0.837 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.017 -4.133 -5.391 6.793 hybrid contribution -1.063 0.724 1.783 2.199 sum -1.046 -3.409 -3.608 5.073 Atomic orbital electron populations 1.23892 0.96275 1.01486 1.03386 1.23020 0.95794 0.98161 0.97808 1.19725 0.95113 0.92025 0.96996 1.21907 0.98601 0.98928 1.00373 1.21642 0.98466 1.02916 0.94966 1.21624 0.94730 0.94482 0.93909 1.60990 1.26697 1.04139 1.40896 1.18075 0.89128 0.92166 0.87804 0.94875 1.21741 1.29954 1.04911 1.01061 0.92515 1.24940 0.95583 0.96306 0.95995 1.69492 1.42938 1.16141 1.23101 0.86565 0.79071 0.79364 0.83235 1.19853 1.20778 1.20947 1.20197 0.92968 0.96491 0.92216 1.21398 0.97853 0.92198 0.96110 1.21103 0.94083 1.00224 1.01175 1.20760 0.97294 0.99103 1.00029 1.20747 0.98157 0.97025 1.00251 1.20853 0.93625 0.99974 1.00928 0.88033 0.89400 0.88042 0.91087 0.93593 0.93015 0.93458 0.94343 0.90802 0.93320 0.95831 0.80228 0.92314 0.83662 0.88159 0.88375 0.88176 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.90 13.70 29.02 0.40 -2.50 16 2 C -0.13 -1.90 8.76 -36.03 -0.32 -2.22 16 3 C -0.04 -0.63 0.81 -155.65 -0.13 -0.76 16 4 C -0.14 -2.37 6.80 37.16 0.25 -2.12 16 5 C -0.12 -1.93 8.30 37.16 0.31 -1.62 16 6 C 0.08 1.63 4.42 -3.82 -0.02 1.61 16 7 N -0.69 -15.06 4.63 -109.19 -0.51 -15.57 16 8 C 0.24 5.64 2.51 -70.02 -0.18 5.47 16 9 H 0.03 0.78 7.74 -51.93 -0.40 0.38 16 10 C -0.54 -13.86 8.62 -34.44 -0.30 -14.16 16 11 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 12 C 0.07 1.89 5.09 -17.82 -0.09 1.80 16 13 N -0.88 -21.92 7.93 55.43 0.44 -21.48 16 14 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.02 -0.41 4.77 -104.62 -0.50 -0.91 16 19 C -0.06 -1.31 7.75 -39.58 -0.31 -1.61 16 20 C -0.15 -3.05 10.05 -39.58 -0.40 -3.45 16 21 C -0.15 -2.98 10.05 -39.59 -0.40 -3.37 16 22 C -0.14 -2.82 10.05 -39.59 -0.40 -3.21 16 23 C -0.14 -2.92 9.70 -39.58 -0.38 -3.30 16 24 H 0.10 1.39 5.69 -52.49 -0.30 1.09 16 25 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 26 H 0.10 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.07 1.33 6.57 -51.93 -0.34 0.99 16 28 H 0.05 0.68 7.50 -51.93 -0.39 0.29 16 29 H 0.05 0.90 7.50 -51.93 -0.39 0.51 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.28 7.60 -51.93 -0.39 0.88 16 33 H 0.05 0.93 8.06 -51.93 -0.42 0.51 16 34 H 0.02 0.51 8.00 -51.93 -0.42 0.09 16 35 H 0.37 8.53 3.52 -39.29 -0.14 8.39 16 36 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 37 H 0.15 3.49 5.55 -52.49 -0.29 3.20 16 38 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 39 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -25.24 323.28 -9.07 -34.31 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -6.41 Total: 12.80 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -2.45 Total: -30.36 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.07 Total: -37.05 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -25.24 -9.07 -34.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384814704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.560 kcal (2) G-P(sol) polarization free energy of solvation -25.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds