Wall clock time and date at job start Mon Mar 30 2020 07:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00482 * 2 1 4 4 C 1.53008 * 109.46914 * 0.02562 * 3 2 1 5 5 C 1.53008 * 109.47326 * 240.00245 * 3 2 1 6 6 C 1.53003 * 109.47350 * 120.00104 * 3 2 1 7 7 N 1.46901 * 109.47274 * 180.02562 * 6 3 2 8 8 C 1.46893 * 111.00152 * 179.97438 * 7 6 3 9 9 H 1.09006 * 109.46705 * 35.00659 * 8 7 6 10 10 C 1.50696 * 109.47339 * 275.00224 * 8 7 6 11 11 H 1.08004 * 119.99979 * 122.44143 * 10 8 7 12 12 C 1.37878 * 119.99760 * 302.16409 * 10 8 7 13 13 N 1.31511 * 120.00357 * 6.21866 * 12 10 8 14 14 Si 1.86800 * 119.99659 * 186.21862 * 12 10 8 15 15 H 1.48503 * 109.47398 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47127 * 120.00206 * 14 12 10 17 17 H 1.48498 * 109.47192 * 239.99876 * 14 12 10 18 18 C 1.50704 * 109.46972 * 154.99606 * 8 7 6 19 19 C 1.38237 * 119.99679 * 30.25810 * 18 8 7 20 20 C 1.38239 * 119.99427 * 179.80999 * 19 18 8 21 21 C 1.38234 * 120.00151 * 0.38663 * 20 19 18 22 22 C 1.38231 * 120.00100 * 359.86452 * 21 20 19 23 23 C 1.38234 * 119.99953 * 359.95077 * 22 21 20 24 24 H 1.08000 * 119.99800 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00585 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99800 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47072 * 180.02562 * 4 3 2 28 28 H 1.08996 * 109.46748 * 299.99916 * 4 3 2 29 29 H 1.08996 * 109.46882 * 59.99828 * 4 3 2 30 30 H 1.08997 * 109.46963 * 300.00087 * 5 3 2 31 31 H 1.08999 * 109.46678 * 59.99991 * 5 3 2 32 32 H 1.08994 * 109.46787 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.46902 * 59.99936 * 6 3 2 34 34 H 1.08995 * 109.46898 * 299.99944 * 6 3 2 35 35 H 1.00903 * 110.99576 * 56.04321 * 7 6 3 36 36 H 0.96993 * 120.00430 * 179.97438 * 13 12 10 37 37 H 1.07994 * 119.99898 * 359.97438 * 19 18 8 38 38 H 1.08004 * 119.99684 * 180.23196 * 20 19 18 39 39 H 1.08003 * 119.99548 * 179.83698 * 21 20 19 40 40 H 1.07998 * 119.99774 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.99847 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9432 1.3860 -1.2493 6 6 2.9432 1.3860 1.2492 7 7 3.6774 2.6584 1.2495 8 6 4.5340 2.7717 2.4374 9 1 4.9260 1.7885 2.6977 10 6 3.7264 3.3117 3.5895 11 1 3.6492 2.7466 4.5066 12 6 3.0909 4.5299 3.4747 13 7 3.0866 5.1634 2.3222 14 14 2.2359 5.2805 4.9563 15 1 2.3851 4.3762 6.1247 16 1 2.8496 6.5964 5.2678 17 1 0.7939 5.4660 4.6542 18 6 5.6786 3.7071 2.1440 19 6 5.5107 4.7441 1.2454 20 6 6.5594 5.6045 0.9793 21 6 7.7783 5.4231 1.6056 22 6 7.9477 4.3831 2.5003 23 6 6.8978 3.5250 2.7694 24 1 -0.5400 0.9353 0.0004 25 1 -0.5401 -0.9352 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.6144 3.4120 0.0002 28 1 0.4424 2.4105 -0.8891 29 1 0.4430 2.4101 0.8908 30 1 3.6514 0.5575 -1.2494 31 1 2.3165 1.3284 -2.1392 32 1 3.4879 2.3301 -1.2495 33 1 3.6515 0.5575 1.2492 34 1 2.3166 1.3283 2.1392 35 1 3.0440 3.4413 1.1847 36 1 2.6392 6.0201 2.2413 37 1 4.5595 4.8836 0.7534 38 1 6.4272 6.4169 0.2800 39 1 8.5984 6.0938 1.3956 40 1 8.9001 4.2412 2.9893 41 1 7.0300 2.7126 3.4686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384814704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:22 Heat of formation + Delta-G solvation = 28.724024 kcal Electronic energy + Delta-G solvation = -19902.027028 eV Core-core repulsion = 17167.481019 eV Total energy + Delta-G solvation = -2734.546009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01573 -39.03409 -36.50915 -33.66163 -32.19918 -31.33598 -30.67269 -28.31094 -28.13446 -26.19399 -24.29796 -23.00616 -22.02101 -21.45284 -18.93691 -18.48609 -17.55232 -16.88220 -16.53042 -15.83833 -15.59507 -15.42401 -15.11311 -14.64276 -14.41532 -14.09268 -13.80361 -13.46504 -13.42318 -13.17583 -12.93583 -12.84064 -12.66253 -12.53701 -12.46045 -12.13570 -11.90944 -11.83025 -11.40980 -11.37092 -11.27199 -11.20637 -10.62818 -10.13177 -9.42108 -9.09619 -8.76544 -7.95936 -6.29465 0.88851 1.02881 1.33870 1.39189 1.46451 1.50370 2.37801 3.08301 3.39547 3.85164 4.03452 4.12465 4.31301 4.39359 4.40902 4.51895 4.55246 4.61905 4.80255 4.83692 4.91242 4.95648 5.00842 5.05210 5.16016 5.19760 5.24148 5.25129 5.32214 5.52862 5.53337 5.59962 5.65394 5.71407 5.83374 5.93203 6.03946 6.11015 6.11140 6.38525 6.53342 6.62319 7.01137 7.30988 7.51865 8.83468 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.007994 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.342843 B = 3501.790599 C = 4569.047097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.034 4.034 4 C -0.134 4.134 5 C -0.116 4.116 6 C 0.085 3.915 7 N -0.684 5.684 8 C 0.237 3.763 9 H 0.020 0.980 10 C -0.560 4.560 11 H 0.039 0.961 12 C 0.045 3.955 13 N -0.879 5.879 14 Si 0.937 3.063 15 H -0.279 1.279 16 H -0.283 1.283 17 H -0.278 1.278 18 C -0.044 4.044 19 C -0.075 4.075 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.152 4.152 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.049 0.951 34 H -0.003 1.003 35 H 0.364 0.636 36 H 0.267 0.733 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 -3.890 -5.598 6.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.165 4.165 3 C -0.034 4.034 4 C -0.191 4.191 5 C -0.174 4.174 6 C -0.045 4.045 7 N -0.321 5.321 8 C 0.128 3.872 9 H 0.039 0.961 10 C -0.599 4.599 11 H 0.057 0.943 12 C -0.157 4.157 13 N -0.517 5.517 14 Si 0.764 3.236 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.203 1.203 18 C -0.045 4.045 19 C -0.094 4.094 20 C -0.172 4.172 21 C -0.167 4.167 22 C -0.158 4.158 23 C -0.171 4.171 24 H 0.117 0.883 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.015 0.985 35 H 0.190 0.810 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.429 -3.936 -6.093 7.266 hybrid contribution -1.164 0.658 1.989 2.396 sum -0.735 -3.278 -4.104 5.304 Atomic orbital electron populations 1.24089 0.95881 1.02559 1.01092 1.22966 0.96260 0.97434 0.99832 1.19650 0.94815 0.93291 0.95668 1.21834 0.98505 0.97857 1.00931 1.21565 0.98546 1.01943 0.95299 1.21669 0.94663 0.93533 0.94678 1.61008 1.26611 1.04735 1.39795 1.18017 0.89644 0.91643 0.87937 0.96131 1.21829 1.31424 1.05528 1.01124 0.94301 1.25390 0.96054 0.96501 0.97804 1.69602 1.42596 1.15955 1.23526 0.85834 0.78524 0.78284 0.80909 1.20446 1.20877 1.20321 1.20263 0.93625 0.97031 0.93569 1.21298 0.98124 0.93227 0.96772 1.21384 0.94086 1.00198 1.01558 1.21182 0.97644 0.99122 0.98742 1.21141 0.98803 0.96095 0.99773 1.21073 0.93820 1.00973 1.01199 0.88294 0.86981 0.86734 0.93535 0.91214 0.94119 0.92923 0.92324 0.92920 0.93227 0.98451 0.80954 0.92284 0.85479 0.86086 0.84670 0.84776 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.98 13.70 67.78 0.93 -4.05 16 2 C -0.15 -4.10 8.76 25.65 0.22 -3.88 16 3 C -0.03 -1.12 0.81 -52.92 -0.04 -1.16 16 4 C -0.13 -4.53 6.80 71.98 0.49 -4.04 16 5 C -0.12 -3.58 8.30 71.98 0.60 -2.99 16 6 C 0.08 3.45 4.42 86.30 0.38 3.83 16 7 N -0.68 -31.16 4.63 -499.37 -2.31 -33.47 16 8 C 0.24 11.74 2.51 43.42 0.11 11.84 16 9 H 0.02 1.02 7.74 -2.38 -0.02 1.01 16 10 C -0.56 -29.96 8.62 25.60 0.22 -29.73 16 11 H 0.04 2.14 7.82 -2.91 -0.02 2.12 16 12 C 0.04 2.33 5.09 84.66 0.43 2.76 16 13 N -0.88 -44.74 7.93 21.45 0.17 -44.57 16 14 Si 0.94 42.48 29.54 68.60 2.03 44.51 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 18 C -0.04 -2.09 4.77 -19.86 -0.09 -2.18 16 19 C -0.08 -3.49 7.75 22.27 0.17 -3.32 16 20 C -0.15 -6.15 10.05 22.27 0.22 -5.93 16 21 C -0.15 -5.33 10.05 22.27 0.22 -5.10 16 22 C -0.14 -5.16 10.05 22.27 0.22 -4.93 16 23 C -0.15 -6.52 9.70 22.27 0.22 -6.31 16 24 H 0.10 2.52 5.69 -2.91 -0.02 2.50 16 25 H 0.11 2.27 8.06 -2.91 -0.02 2.25 16 26 H 0.11 2.90 8.06 -2.91 -0.02 2.87 16 27 H 0.05 1.79 6.57 -2.39 -0.02 1.77 16 28 H 0.07 1.98 7.50 -2.39 -0.02 1.96 16 29 H 0.04 1.43 7.50 -2.39 -0.02 1.41 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.84 7.60 -2.39 -0.02 1.82 16 33 H 0.05 1.96 8.06 -2.39 -0.02 1.94 16 34 H 0.00 -0.13 8.00 -2.39 -0.02 -0.14 16 35 H 0.36 17.46 3.52 -89.69 -0.32 17.15 16 36 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 37 H 0.13 6.28 5.55 -2.91 -0.02 6.27 16 38 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 39 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 40 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -54.74 323.28 4.86 -49.87 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: 0.67 Total: 38.85 kcal Atomic # 6 Polarization: -59.50 SS G_CDS: 4.30 Total: -55.19 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -2.14 Total: -78.04 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -54.74 4.86 -49.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384814704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.599 kcal (2) G-P(sol) polarization free energy of solvation -54.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds