Wall clock time and date at job start Mon Mar 30 2020 07:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 H 1.09001 * 115.56232 * 29.31669 * 3 2 1 5 5 C 1.52998 * 117.49570 * 243.62152 * 3 2 1 6 6 C 1.53005 * 117.49363 * 174.99942 * 3 2 1 7 7 H 1.09002 * 117.51789 * 214.96958 * 6 3 2 8 8 C 1.52991 * 117.50220 * 0.02562 * 6 3 2 9 9 N 1.46897 * 109.47465 * 185.01130 * 8 6 3 10 10 C 1.46899 * 111.00246 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47381 * 34.99959 * 10 9 8 12 12 C 1.50695 * 109.47227 * 274.99633 * 10 9 8 13 13 H 1.08000 * 120.00506 * 303.74503 * 12 10 9 14 14 C 1.37882 * 119.99832 * 123.73752 * 12 10 9 15 15 N 1.31513 * 119.99954 * 172.91093 * 14 12 10 16 16 Si 1.86798 * 120.00004 * 352.91813 * 14 12 10 17 17 H 1.48500 * 109.47080 * 85.54358 * 16 14 12 18 18 H 1.48498 * 109.47126 * 205.54616 * 16 14 12 19 19 H 1.48498 * 109.47027 * 325.54527 * 16 14 12 20 20 C 1.50703 * 109.46826 * 154.99970 * 10 9 8 21 21 C 1.38238 * 120.00429 * 45.58168 * 20 10 9 22 22 C 1.38230 * 120.00350 * 179.80708 * 21 20 10 23 23 C 1.38239 * 119.99905 * 0.41717 * 22 21 20 24 24 C 1.38237 * 119.99911 * 359.81384 * 23 22 21 25 25 C 1.38235 * 119.99833 * 225.85078 * 20 10 9 26 26 H 1.08996 * 109.47387 * 59.99419 * 1 2 3 27 27 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47005 * 299.99905 * 1 2 3 29 29 H 1.08998 * 109.47005 * 240.00094 * 2 1 3 30 30 H 1.08991 * 109.47157 * 120.00192 * 2 1 3 31 31 H 1.09008 * 117.49765 * 145.02929 * 5 3 2 32 32 H 1.08993 * 117.52192 * 359.97438 * 5 3 2 33 33 H 1.09001 * 109.47204 * 65.01037 * 8 6 3 34 34 H 1.09000 * 109.46932 * 305.01063 * 8 6 3 35 35 H 1.00901 * 110.99796 * 56.04350 * 9 8 6 36 36 H 0.97002 * 120.00000 * 180.02562 * 15 14 12 37 37 H 1.08001 * 119.99480 * 359.97438 * 21 20 10 38 38 H 1.07998 * 119.99981 * 180.20512 * 22 21 20 39 39 H 1.07997 * 120.00017 * 179.78999 * 23 22 21 40 40 H 1.08000 * 120.00259 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00362 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4815 5 6 2.8439 1.9075 -1.2159 6 6 3.5502 1.6578 0.1183 7 1 3.8924 2.5287 0.6773 8 6 4.4347 0.4143 0.2269 9 7 5.8279 0.8224 0.4515 10 6 6.7082 -0.3485 0.5617 11 1 6.3545 -1.1333 -0.1069 12 6 6.6957 -0.8545 1.9811 13 1 6.9579 -0.1923 2.7929 14 6 6.3493 -2.1631 2.2434 15 7 6.4719 -2.6443 3.4612 16 14 5.7061 -3.2525 0.8691 17 1 6.8498 -3.8620 0.1442 18 1 4.8562 -4.3256 1.4446 19 1 4.9009 -2.4357 -0.0742 20 6 8.1129 0.0416 0.1799 21 6 8.6663 1.2066 0.6774 22 6 9.9562 1.5623 0.3304 23 6 10.6897 0.7574 -0.5212 24 6 10.1347 -0.4051 -1.0225 25 6 8.8461 -0.7628 -0.6723 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.7213 2.9428 -1.5343 32 1 3.0101 1.1860 -2.0157 33 1 4.3689 -0.1603 -0.6970 34 1 4.0970 -0.2000 1.0617 35 1 5.9053 1.4107 1.2676 36 1 6.2286 -3.5650 3.6457 37 1 8.0917 1.8374 1.3395 38 1 10.3896 2.4708 0.7217 39 1 11.6963 1.0371 -0.7950 40 1 10.7076 -1.0338 -1.6881 41 1 8.4124 -1.6710 -1.0642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388212537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:10 Heat of formation + Delta-G solvation = 32.481683 kcal Electronic energy + Delta-G solvation = -19163.939953 eV Core-core repulsion = 16429.556888 eV Total energy + Delta-G solvation = -2734.383065 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.66286 -38.06116 -35.25679 -32.43469 -31.79962 -30.45525 -30.11583 -27.11660 -24.64362 -23.77318 -22.50816 -21.75427 -21.07944 -19.74600 -19.09048 -17.15166 -16.16975 -15.48356 -14.78129 -14.66095 -14.51043 -14.04392 -13.95808 -13.63790 -12.99279 -12.81354 -12.67953 -12.27548 -12.23272 -12.00441 -11.84711 -11.66770 -11.26838 -11.20339 -11.01384 -10.97732 -10.59921 -10.41049 -10.19719 -9.86023 -9.55818 -9.49946 -9.41435 -8.74632 -8.18545 -7.89375 -7.28331 -6.26318 -4.27582 2.14619 2.21498 3.16196 3.23372 3.25172 4.04984 4.24631 4.56465 4.83958 4.94901 5.11661 5.15805 5.30642 5.41117 5.54322 5.56177 5.59539 5.66427 5.75466 5.83678 5.89454 6.05188 6.09819 6.10771 6.11341 6.23207 6.27352 6.28893 6.39361 6.45555 6.53087 6.62165 6.72702 6.78164 6.87037 7.17477 7.27012 7.38753 7.55570 7.79727 7.98263 8.26740 8.50024 8.79046 9.36100 10.86193 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.006754 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.467781 B = 4144.592845 C = 5219.047420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.154 4.154 4 H 0.099 0.901 5 C -0.176 4.176 6 C -0.133 4.133 7 H 0.102 0.898 8 C 0.097 3.903 9 N -0.684 5.684 10 C 0.205 3.795 11 H 0.050 0.950 12 C -0.535 4.535 13 H 0.077 0.923 14 C 0.081 3.919 15 N -0.886 5.886 16 Si 0.868 3.132 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.261 1.261 20 C -0.014 4.014 21 C -0.103 4.103 22 C -0.125 4.125 23 C -0.151 4.151 24 C -0.123 4.123 25 C -0.133 4.133 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.333 0.667 36 H 0.266 0.734 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.223 6.315 -8.139 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 C -0.173 4.173 4 H 0.117 0.883 5 C -0.213 4.213 6 C -0.152 4.152 7 H 0.120 0.880 8 C -0.033 4.033 9 N -0.314 5.314 10 C 0.097 3.903 11 H 0.067 0.933 12 C -0.574 4.574 13 H 0.095 0.905 14 C -0.124 4.124 15 N -0.522 5.522 16 Si 0.695 3.305 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.186 1.186 20 C -0.015 4.015 21 C -0.121 4.121 22 C -0.144 4.144 23 C -0.170 4.170 24 C -0.141 4.141 25 C -0.152 4.152 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.150 0.850 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.129 6.230 -8.689 11.462 hybrid contribution -0.452 -1.104 0.358 1.246 sum -4.581 5.126 -8.331 10.801 Atomic orbital electron populations 1.21736 0.95946 1.01251 1.01455 1.21103 0.95337 0.94624 1.02390 1.22424 0.94221 0.97718 1.02933 0.88312 1.23088 1.04928 1.01459 0.91785 1.22411 0.92415 1.00563 0.99816 0.87968 1.21308 0.88457 0.93552 0.99990 1.61005 1.05273 1.20512 1.44589 1.18629 0.86289 0.89177 0.96206 0.93252 1.21513 1.47203 0.97444 0.91223 0.90470 1.25097 0.94452 0.97531 0.95338 1.69914 1.46559 1.15667 1.20093 0.87007 0.79970 0.80669 0.82854 1.19823 1.21246 1.18614 1.20271 0.97465 0.92366 0.91415 1.20815 0.94533 0.96953 0.99795 1.21017 0.95030 0.99428 0.98884 1.20836 0.99382 0.96279 1.00461 1.20923 0.95498 0.97057 1.00607 1.20938 0.94898 0.99850 0.99511 0.92964 0.92990 0.92866 0.92018 0.91287 0.89518 0.89177 0.92439 0.94179 0.85015 0.92378 0.86749 0.87274 0.87431 0.87307 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.87 37.16 0.37 -1.27 16 2 C -0.10 -1.32 5.30 -26.73 -0.14 -1.46 16 3 C -0.15 -2.08 5.74 -90.62 -0.52 -2.60 16 4 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 5 C -0.18 -2.37 9.82 -26.73 -0.26 -2.64 16 6 C -0.13 -2.06 5.95 -90.62 -0.54 -2.60 16 7 H 0.10 1.54 8.13 -51.93 -0.42 1.11 16 8 C 0.10 1.82 4.84 -3.83 -0.02 1.80 16 9 N -0.68 -13.82 5.83 -109.19 -0.64 -14.46 16 10 C 0.20 4.68 2.16 -70.02 -0.15 4.53 16 11 H 0.05 1.17 4.15 -51.93 -0.22 0.95 16 12 C -0.54 -14.22 8.58 -34.44 -0.30 -14.52 16 13 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 14 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 15 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 16 Si 0.87 20.69 27.03 -169.99 -4.60 16.10 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.26 -5.90 6.68 56.52 0.38 -5.52 16 20 C -0.01 -0.30 4.93 -104.62 -0.52 -0.82 16 21 C -0.10 -2.03 9.27 -39.58 -0.37 -2.40 16 22 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 23 C -0.15 -2.53 10.05 -39.58 -0.40 -2.93 16 24 C -0.12 -2.17 10.05 -39.58 -0.40 -2.56 16 25 C -0.13 -2.71 9.67 -39.58 -0.38 -3.09 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 30 H 0.07 1.04 7.60 -51.93 -0.39 0.65 16 31 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.09 1.24 7.92 -51.93 -0.41 0.83 16 33 H 0.06 1.11 7.79 -51.93 -0.40 0.71 16 34 H 0.04 0.85 7.45 -51.93 -0.39 0.46 16 35 H 0.33 6.61 7.90 -39.29 -0.31 6.30 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.11 2.18 7.45 -52.49 -0.39 1.79 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.11 2.13 8.00 -52.49 -0.42 1.71 16 LS Contribution 334.89 15.07 5.05 5.05 Total: -1.00 -28.38 334.89 -10.26 -38.64 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.73 Total: 11.05 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: -4.12 Total: -31.02 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.14 Total: -39.82 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.60 Total: 16.10 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.38 -10.26 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388212537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.119 kcal (2) G-P(sol) polarization free energy of solvation -28.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds