Wall clock time and date at job start Mon Mar 30 2020 07:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46965 * 2 1 4 4 H 1.09001 * 115.56232 * 29.31669 * 3 2 1 5 5 C 1.52998 * 117.49570 * 243.62152 * 3 2 1 6 6 C 1.53005 * 117.49363 * 174.99942 * 3 2 1 7 7 H 1.09002 * 117.51789 * 214.96958 * 6 3 2 8 8 C 1.52991 * 117.50220 * 0.02562 * 6 3 2 9 9 N 1.46897 * 109.47465 * 185.01130 * 8 6 3 10 10 C 1.46899 * 111.00246 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47381 * 34.99959 * 10 9 8 12 12 C 1.50695 * 109.47227 * 274.99633 * 10 9 8 13 13 H 1.08000 * 120.00506 * 303.74503 * 12 10 9 14 14 C 1.37882 * 119.99832 * 123.73752 * 12 10 9 15 15 N 1.31513 * 119.99954 * 172.91093 * 14 12 10 16 16 Si 1.86798 * 120.00004 * 352.91813 * 14 12 10 17 17 H 1.48500 * 109.47080 * 85.54358 * 16 14 12 18 18 H 1.48498 * 109.47126 * 205.54616 * 16 14 12 19 19 H 1.48498 * 109.47027 * 325.54527 * 16 14 12 20 20 C 1.50703 * 109.46826 * 154.99970 * 10 9 8 21 21 C 1.38238 * 120.00429 * 45.58168 * 20 10 9 22 22 C 1.38230 * 120.00350 * 179.80708 * 21 20 10 23 23 C 1.38239 * 119.99905 * 0.41717 * 22 21 20 24 24 C 1.38237 * 119.99911 * 359.81384 * 23 22 21 25 25 C 1.38235 * 119.99833 * 225.85078 * 20 10 9 26 26 H 1.08996 * 109.47387 * 59.99419 * 1 2 3 27 27 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47005 * 299.99905 * 1 2 3 29 29 H 1.08998 * 109.47005 * 240.00094 * 2 1 3 30 30 H 1.08991 * 109.47157 * 120.00192 * 2 1 3 31 31 H 1.09008 * 117.49765 * 145.02929 * 5 3 2 32 32 H 1.08993 * 117.52192 * 359.97438 * 5 3 2 33 33 H 1.09001 * 109.47204 * 65.01037 * 8 6 3 34 34 H 1.09000 * 109.46932 * 305.01063 * 8 6 3 35 35 H 1.00901 * 110.99796 * 56.04350 * 9 8 6 36 36 H 0.97002 * 120.00000 * 180.02562 * 15 14 12 37 37 H 1.08001 * 119.99480 * 359.97438 * 21 20 10 38 38 H 1.07998 * 119.99981 * 180.20512 * 22 21 20 39 39 H 1.07997 * 120.00017 * 179.78999 * 23 22 21 40 40 H 1.08000 * 120.00259 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00362 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4815 5 6 2.8439 1.9075 -1.2159 6 6 3.5502 1.6578 0.1183 7 1 3.8924 2.5287 0.6773 8 6 4.4347 0.4143 0.2269 9 7 5.8279 0.8224 0.4515 10 6 6.7082 -0.3485 0.5617 11 1 6.3545 -1.1333 -0.1069 12 6 6.6957 -0.8545 1.9811 13 1 6.9579 -0.1923 2.7929 14 6 6.3493 -2.1631 2.2434 15 7 6.4719 -2.6443 3.4612 16 14 5.7061 -3.2525 0.8691 17 1 6.8498 -3.8620 0.1442 18 1 4.8562 -4.3256 1.4446 19 1 4.9009 -2.4357 -0.0742 20 6 8.1129 0.0416 0.1799 21 6 8.6663 1.2066 0.6774 22 6 9.9562 1.5623 0.3304 23 6 10.6897 0.7574 -0.5212 24 6 10.1347 -0.4051 -1.0225 25 6 8.8461 -0.7628 -0.6723 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.7213 2.9428 -1.5343 32 1 3.0101 1.1860 -2.0157 33 1 4.3689 -0.1603 -0.6970 34 1 4.0970 -0.2000 1.0617 35 1 5.9053 1.4107 1.2676 36 1 6.2286 -3.5650 3.6457 37 1 8.0917 1.8374 1.3395 38 1 10.3896 2.4708 0.7217 39 1 11.6963 1.0371 -0.7950 40 1 10.7076 -1.0338 -1.6881 41 1 8.4124 -1.6710 -1.0642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388212537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:09 Heat of formation + Delta-G solvation = 17.410914 kcal Electronic energy + Delta-G solvation = -19164.593471 eV Core-core repulsion = 16429.556888 eV Total energy + Delta-G solvation = -2735.036583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15287 -39.29504 -36.89065 -34.36254 -33.04504 -31.89716 -31.55330 -28.88407 -26.34817 -24.77727 -24.14889 -23.19281 -22.27249 -21.37404 -20.37119 -19.17596 -17.61532 -16.85595 -16.54439 -16.07676 -15.95605 -15.40629 -15.22616 -15.04956 -14.85271 -14.21804 -14.13624 -13.88237 -13.77262 -13.36804 -13.18261 -13.02606 -12.92794 -12.68609 -12.36660 -12.16305 -11.98640 -11.87620 -11.73952 -11.63185 -11.32185 -10.89798 -10.73999 -10.61395 -9.63554 -9.42044 -9.00513 -8.40938 -6.44754 0.68489 0.74939 1.23458 1.24903 1.33123 2.21847 2.84026 2.94321 3.18730 3.53617 3.76002 3.98745 4.13397 4.15081 4.28972 4.31945 4.39094 4.45073 4.48413 4.54204 4.59163 4.63551 4.82159 4.84035 4.92028 4.92511 4.98757 5.02281 5.16471 5.21721 5.27078 5.29623 5.35628 5.39214 5.42454 5.50219 5.75177 5.79515 5.97131 6.04245 6.31895 6.41780 6.61347 6.74903 7.22429 8.75381 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.006754 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.467781 B = 4144.592845 C = 5219.047420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.143 4.143 4 H 0.118 0.882 5 C -0.159 4.159 6 C -0.155 4.155 7 H 0.106 0.894 8 C 0.103 3.897 9 N -0.674 5.674 10 C 0.213 3.787 11 H 0.041 0.959 12 C -0.529 4.529 13 H 0.037 0.963 14 C 0.027 3.973 15 N -0.936 5.936 16 Si 0.924 3.076 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.247 1.247 20 C -0.048 4.048 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.122 4.122 25 C -0.155 4.155 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.010 0.990 35 H 0.333 0.667 36 H 0.267 0.733 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 7.499 -10.507 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 C -0.162 4.162 4 H 0.136 0.864 5 C -0.196 4.196 6 C -0.174 4.174 7 H 0.124 0.876 8 C -0.027 4.027 9 N -0.303 5.303 10 C 0.104 3.896 11 H 0.059 0.941 12 C -0.568 4.568 13 H 0.056 0.944 14 C -0.173 4.173 15 N -0.575 5.575 16 Si 0.749 3.251 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.171 1.171 20 C -0.049 4.049 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.161 4.161 24 C -0.140 4.140 25 C -0.174 4.174 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.028 0.972 35 H 0.149 0.851 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.803 7.435 -11.076 13.872 hybrid contribution -0.453 -1.364 1.104 1.812 sum -4.257 6.071 -9.972 12.427 Atomic orbital electron populations 1.21697 0.93749 1.01944 1.02458 1.21129 0.97321 0.94489 1.00962 1.22524 0.92818 0.98049 1.02791 0.86402 1.23150 1.02977 1.02693 0.90796 1.22277 0.93425 0.99172 1.02517 0.87581 1.21248 0.88184 0.94993 0.98276 1.61013 1.05851 1.19242 1.44170 1.18465 0.88098 0.89689 0.93363 0.94093 1.21683 1.45838 0.96787 0.92466 0.94428 1.25851 0.94932 0.99087 0.97453 1.70048 1.48959 1.16213 1.22296 0.86089 0.79772 0.78943 0.80325 1.18899 1.21082 1.17137 1.20247 0.96835 0.94132 0.93712 1.20925 0.96022 0.96685 1.00224 1.21398 0.93897 1.00575 0.98383 1.21335 1.00825 0.95157 0.98755 1.21309 0.94471 0.97745 1.00438 1.21114 0.96364 0.99858 1.00079 0.91584 0.92552 0.92181 0.92648 0.93621 0.87278 0.89403 0.93099 0.97190 0.85053 0.92397 0.87252 0.84155 0.83431 0.84108 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.87 71.98 0.71 -2.18 16 2 C -0.10 -2.69 5.30 30.59 0.16 -2.53 16 3 C -0.14 -3.65 5.74 -10.79 -0.06 -3.71 16 4 H 0.12 2.58 8.08 -2.39 -0.02 2.56 16 5 C -0.16 -3.97 9.82 30.60 0.30 -3.67 16 6 C -0.16 -4.72 5.95 -10.79 -0.06 -4.79 16 7 H 0.11 3.13 8.13 -2.39 -0.02 3.11 16 8 C 0.10 3.96 4.84 86.30 0.42 4.38 16 9 N -0.67 -28.00 5.83 -499.38 -2.91 -30.91 16 10 C 0.21 10.00 2.16 43.42 0.09 10.09 16 11 H 0.04 1.97 4.15 -2.39 -0.01 1.96 16 12 C -0.53 -29.51 8.58 25.60 0.22 -29.29 16 13 H 0.04 2.34 8.06 -2.91 -0.02 2.31 16 14 C 0.03 1.52 5.47 84.66 0.46 1.99 16 15 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 16 Si 0.92 43.91 27.03 68.60 1.85 45.77 16 17 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.25 -11.02 6.68 99.48 0.66 -10.36 16 20 C -0.05 -2.10 4.93 -19.86 -0.10 -2.20 16 21 C -0.12 -4.73 9.27 22.27 0.21 -4.53 16 22 C -0.12 -4.03 10.05 22.27 0.22 -3.81 16 23 C -0.14 -4.24 10.05 22.27 0.22 -4.01 16 24 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 25 C -0.16 -6.20 9.67 22.27 0.22 -5.98 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.51 7.88 -2.39 -0.02 1.49 16 30 H 0.05 1.41 7.60 -2.39 -0.02 1.39 16 31 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.09 2.25 7.92 -2.39 -0.02 2.23 16 33 H 0.05 2.00 7.79 -2.39 -0.02 1.98 16 34 H 0.01 0.44 7.45 -2.39 -0.02 0.42 16 35 H 0.33 13.80 7.90 -89.69 -0.71 13.09 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.11 4.27 7.45 -2.91 -0.02 4.25 16 38 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 41 H 0.11 4.12 8.00 -2.91 -0.02 4.09 16 Total: -1.00 -64.10 334.89 2.72 -61.38 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: 0.24 Total: 35.18 kcal Atomic # 6 Polarization: -57.20 SS G_CDS: 3.24 Total: -53.97 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -2.61 Total: -88.35 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.85 Total: 45.77 kcal Total: -64.10 2.72 -61.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388212537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.786 kcal (2) G-P(sol) polarization free energy of solvation -64.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds