Wall clock time and date at job start Mon Mar 30 2020 07:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 H 1.08994 * 115.55283 * 29.32902 * 3 2 1 5 5 C 1.53007 * 117.49498 * 243.61675 * 3 2 1 6 6 C 1.52999 * 59.99954 * 252.50946 * 5 3 2 7 7 H 1.09012 * 117.51387 * 107.48002 * 6 5 3 8 8 C 1.52995 * 117.50278 * 252.51105 * 6 5 3 9 9 N 1.46902 * 109.47015 * 243.62521 * 8 6 5 10 10 C 1.46903 * 110.99946 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.47039 * 35.00307 * 10 9 8 12 12 C 1.50697 * 109.46987 * 275.00078 * 10 9 8 13 13 H 1.08000 * 120.00033 * 303.73845 * 12 10 9 14 14 C 1.37879 * 120.00014 * 123.74583 * 12 10 9 15 15 N 1.31512 * 120.00117 * 172.90991 * 14 12 10 16 16 Si 1.86795 * 119.99896 * 352.90591 * 14 12 10 17 17 H 1.48500 * 109.47332 * 85.55046 * 16 14 12 18 18 H 1.48502 * 109.47638 * 205.55104 * 16 14 12 19 19 H 1.48505 * 109.47464 * 325.55322 * 16 14 12 20 20 C 1.50699 * 109.46911 * 154.99963 * 10 9 8 21 21 C 1.38231 * 120.00156 * 45.71662 * 20 10 9 22 22 C 1.38236 * 120.00193 * 180.02562 * 21 20 10 23 23 C 1.38239 * 119.99954 * 0.07243 * 22 21 20 24 24 C 1.38230 * 119.99864 * 359.97438 * 23 22 21 25 25 C 1.38239 * 120.00230 * 359.97438 * 24 23 22 26 26 H 1.08995 * 109.47507 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47381 * 300.00510 * 1 2 3 28 28 H 1.09009 * 109.46932 * 60.00047 * 1 2 3 29 29 H 1.08995 * 109.47381 * 239.99490 * 2 1 3 30 30 H 1.09003 * 109.46554 * 119.99737 * 2 1 3 31 31 H 1.09004 * 117.49498 * 145.01959 * 5 3 2 32 32 H 1.08999 * 117.50180 * 0.02562 * 5 3 2 33 33 H 1.08992 * 109.47317 * 123.62499 * 8 6 5 34 34 H 1.09000 * 109.46882 * 3.62123 * 8 6 5 35 35 H 1.00899 * 111.00253 * 56.04574 * 9 8 6 36 36 H 0.97004 * 120.00198 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.00146 * 0.10055 * 21 20 10 38 38 H 1.08005 * 120.00317 * 180.33861 * 22 21 20 39 39 H 1.07994 * 119.99869 * 179.97438 * 23 22 21 40 40 H 1.07994 * 119.99961 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.00220 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8441 1.9075 -1.2159 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7718 0.1966 8 6 4.0300 2.8804 0.9032 9 7 5.4950 2.8511 1.0076 10 6 5.9928 4.0129 1.7563 11 1 5.2843 4.2679 2.5443 12 6 6.1473 5.1844 0.8212 13 1 6.7666 5.0947 -0.0591 14 6 5.4983 6.3709 1.0894 15 7 5.7410 7.4341 0.3543 16 14 4.2742 6.4684 2.4970 17 1 4.9965 6.7557 3.7622 18 1 3.2959 7.5529 2.2282 19 1 3.5567 5.1739 2.6197 20 6 7.3283 3.6802 2.3700 21 6 8.2974 3.0465 1.6149 22 6 9.5223 2.7410 2.1780 23 6 9.7777 3.0678 3.4967 24 6 8.8083 3.7006 4.2521 25 6 7.5837 4.0072 3.6887 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 2.7213 2.9427 -1.5345 32 1 3.0093 1.1859 -2.0159 33 1 3.5942 2.8648 1.9021 34 1 3.7207 3.7886 0.3860 35 1 5.9216 2.7998 0.0947 36 1 5.2847 8.2689 0.5432 37 1 8.0979 2.7912 0.5846 38 1 10.2814 2.2507 1.5864 39 1 10.7345 2.8287 3.9367 40 1 9.0076 3.9556 5.2824 41 1 6.8262 4.5012 4.2790 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388212539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:16 Heat of formation + Delta-G solvation = 31.294580 kcal Electronic energy + Delta-G solvation = -18941.650210 eV Core-core repulsion = 16207.215668 eV Total energy + Delta-G solvation = -2734.434542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.64038 -37.97670 -35.31927 -32.59579 -31.87070 -30.38948 -30.10408 -27.11085 -24.73645 -23.64959 -22.54070 -21.75405 -20.37747 -20.11410 -19.60045 -17.23681 -16.21478 -15.21020 -14.84941 -14.73787 -14.46683 -14.20550 -13.80111 -13.40853 -13.12691 -12.80688 -12.68701 -12.42183 -12.18898 -12.03893 -11.99991 -11.69887 -11.33951 -11.13561 -10.97608 -10.96599 -10.76211 -10.40222 -10.20045 -9.87737 -9.62897 -9.45088 -9.36984 -8.75126 -8.18655 -7.90589 -7.30908 -6.26307 -4.27535 2.14480 2.21341 3.16278 3.23576 3.25252 4.02364 4.24674 4.54540 4.71816 5.06144 5.10431 5.13365 5.28547 5.33255 5.42823 5.56102 5.58674 5.66853 5.75105 5.82608 5.89516 5.94216 6.07696 6.10352 6.11771 6.16252 6.24399 6.30564 6.36885 6.44743 6.47717 6.57705 6.75828 6.80506 6.86764 7.17401 7.27014 7.38918 7.55462 7.79619 7.98023 8.27061 8.50416 8.79128 9.36114 10.86189 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015131 B = 0.006190 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.113197 B = 4522.503000 C = 5619.993783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.156 4.156 4 H 0.100 0.900 5 C -0.179 4.179 6 C -0.136 4.136 7 H 0.107 0.893 8 C 0.094 3.906 9 N -0.684 5.684 10 C 0.205 3.795 11 H 0.050 0.950 12 C -0.534 4.534 13 H 0.077 0.923 14 C 0.080 3.920 15 N -0.886 5.886 16 Si 0.868 3.132 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.261 1.261 20 C -0.014 4.014 21 C -0.103 4.103 22 C -0.126 4.126 23 C -0.151 4.151 24 C -0.123 4.123 25 C -0.133 4.133 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.037 0.963 35 H 0.334 0.666 36 H 0.266 0.734 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 -11.546 1.912 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.175 4.175 4 H 0.118 0.882 5 C -0.216 4.216 6 C -0.154 4.154 7 H 0.125 0.875 8 C -0.035 4.035 9 N -0.314 5.314 10 C 0.097 3.903 11 H 0.068 0.932 12 C -0.573 4.573 13 H 0.095 0.905 14 C -0.124 4.124 15 N -0.523 5.523 16 Si 0.695 3.305 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.186 1.186 20 C -0.015 4.015 21 C -0.121 4.121 22 C -0.144 4.144 23 C -0.170 4.170 24 C -0.141 4.141 25 C -0.152 4.152 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.689 -11.752 2.430 12.555 hybrid contribution -0.698 1.179 0.038 1.370 sum -4.386 -10.574 2.468 11.710 Atomic orbital electron populations 1.21746 0.95888 1.01126 1.01831 1.21084 0.95530 0.94547 1.01693 1.22429 0.94361 0.97498 1.03203 0.88224 1.23197 1.04748 1.02098 0.91535 1.22502 0.93476 1.00807 0.98643 0.87513 1.21341 0.89947 0.94053 0.98186 1.60998 1.04124 1.43925 1.22306 1.18633 0.89390 0.88375 0.93936 0.93231 1.21509 1.30858 0.95805 1.09152 0.90474 1.25097 0.96217 0.95346 0.95787 1.69914 1.41671 1.00905 1.39769 0.87005 0.82107 0.78105 0.83253 1.19795 1.21278 1.18640 1.20268 0.97325 0.91790 0.92144 1.20819 0.92813 0.98859 0.99612 1.21021 0.97039 1.01056 0.95255 1.20836 0.98830 1.02372 0.94913 1.20921 0.94065 0.99998 0.99106 1.20942 0.97135 1.01718 0.95390 0.93057 0.92783 0.92759 0.92135 0.91815 0.88914 0.89355 0.92237 0.94514 0.84895 0.92386 0.86737 0.87270 0.87430 0.87303 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.87 37.16 0.37 -1.08 16 2 C -0.09 -1.02 6.22 -26.73 -0.17 -1.18 16 3 C -0.16 -2.10 5.46 -90.61 -0.49 -2.59 16 4 H 0.10 1.38 8.07 -51.93 -0.42 0.96 16 5 C -0.18 -2.51 9.82 -26.73 -0.26 -2.77 16 6 C -0.14 -2.09 5.67 -90.62 -0.51 -2.61 16 7 H 0.11 1.62 8.14 -51.92 -0.42 1.20 16 8 C 0.09 1.79 5.76 -3.83 -0.02 1.77 16 9 N -0.68 -13.83 5.83 -109.19 -0.64 -14.47 16 10 C 0.20 4.68 2.16 -70.02 -0.15 4.53 16 11 H 0.05 1.17 4.15 -51.93 -0.22 0.96 16 12 C -0.53 -14.24 8.58 -34.44 -0.30 -14.53 16 13 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 14 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 15 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 16 Si 0.87 20.77 27.03 -169.99 -4.60 16.17 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.26 -5.95 6.68 56.52 0.38 -5.57 16 20 C -0.01 -0.30 4.93 -104.62 -0.52 -0.82 16 21 C -0.10 -2.03 9.27 -39.58 -0.37 -2.40 16 22 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 23 C -0.15 -2.53 10.05 -39.58 -0.40 -2.92 16 24 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 25 C -0.13 -2.70 9.67 -39.58 -0.38 -3.09 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.39 8.03 -51.93 -0.42 0.98 16 32 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 33 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 34 H 0.04 0.78 7.73 -51.93 -0.40 0.38 16 35 H 0.33 6.69 7.91 -39.29 -0.31 6.38 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.11 2.19 7.45 -52.48 -0.39 1.79 16 38 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.11 2.13 8.00 -52.49 -0.42 1.71 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -28.35 337.29 -10.25 -38.61 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.78 Total: 10.75 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: -4.09 Total: -30.73 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.14 Total: -39.89 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.60 Total: 16.17 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.35 -10.25 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388212539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.902 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds