Wall clock time and date at job start Mon Mar 30 2020 07:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 H 1.08994 * 115.55283 * 29.32902 * 3 2 1 5 5 C 1.53007 * 117.49498 * 243.61675 * 3 2 1 6 6 C 1.52999 * 59.99954 * 252.50946 * 5 3 2 7 7 H 1.09012 * 117.51387 * 107.48002 * 6 5 3 8 8 C 1.52995 * 117.50278 * 252.51105 * 6 5 3 9 9 N 1.46902 * 109.47015 * 243.62521 * 8 6 5 10 10 C 1.46903 * 110.99946 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.47039 * 35.00307 * 10 9 8 12 12 C 1.50697 * 109.46987 * 275.00078 * 10 9 8 13 13 H 1.08000 * 120.00033 * 303.73845 * 12 10 9 14 14 C 1.37879 * 120.00014 * 123.74583 * 12 10 9 15 15 N 1.31512 * 120.00117 * 172.90991 * 14 12 10 16 16 Si 1.86795 * 119.99896 * 352.90591 * 14 12 10 17 17 H 1.48500 * 109.47332 * 85.55046 * 16 14 12 18 18 H 1.48502 * 109.47638 * 205.55104 * 16 14 12 19 19 H 1.48505 * 109.47464 * 325.55322 * 16 14 12 20 20 C 1.50699 * 109.46911 * 154.99963 * 10 9 8 21 21 C 1.38231 * 120.00156 * 45.71662 * 20 10 9 22 22 C 1.38236 * 120.00193 * 180.02562 * 21 20 10 23 23 C 1.38239 * 119.99954 * 0.07243 * 22 21 20 24 24 C 1.38230 * 119.99864 * 359.97438 * 23 22 21 25 25 C 1.38239 * 120.00230 * 359.97438 * 24 23 22 26 26 H 1.08995 * 109.47507 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47381 * 300.00510 * 1 2 3 28 28 H 1.09009 * 109.46932 * 60.00047 * 1 2 3 29 29 H 1.08995 * 109.47381 * 239.99490 * 2 1 3 30 30 H 1.09003 * 109.46554 * 119.99737 * 2 1 3 31 31 H 1.09004 * 117.49498 * 145.01959 * 5 3 2 32 32 H 1.08999 * 117.50180 * 0.02562 * 5 3 2 33 33 H 1.08992 * 109.47317 * 123.62499 * 8 6 5 34 34 H 1.09000 * 109.46882 * 3.62123 * 8 6 5 35 35 H 1.00899 * 111.00253 * 56.04574 * 9 8 6 36 36 H 0.97004 * 120.00198 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.00146 * 0.10055 * 21 20 10 38 38 H 1.08005 * 120.00317 * 180.33861 * 22 21 20 39 39 H 1.07994 * 119.99869 * 179.97438 * 23 22 21 40 40 H 1.07994 * 119.99961 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.00220 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8441 1.9075 -1.2159 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7718 0.1966 8 6 4.0300 2.8804 0.9032 9 7 5.4950 2.8511 1.0076 10 6 5.9928 4.0129 1.7563 11 1 5.2843 4.2679 2.5443 12 6 6.1473 5.1844 0.8212 13 1 6.7666 5.0947 -0.0591 14 6 5.4983 6.3709 1.0894 15 7 5.7410 7.4341 0.3543 16 14 4.2742 6.4684 2.4970 17 1 4.9965 6.7557 3.7622 18 1 3.2959 7.5529 2.2282 19 1 3.5567 5.1739 2.6197 20 6 7.3283 3.6802 2.3700 21 6 8.2974 3.0465 1.6149 22 6 9.5223 2.7410 2.1780 23 6 9.7777 3.0678 3.4967 24 6 8.8083 3.7006 4.2521 25 6 7.5837 4.0072 3.6887 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 2.7213 2.9427 -1.5345 32 1 3.0093 1.1859 -2.0159 33 1 3.5942 2.8648 1.9021 34 1 3.7207 3.7886 0.3860 35 1 5.9216 2.7998 0.0947 36 1 5.2847 8.2689 0.5432 37 1 8.0979 2.7912 0.5846 38 1 10.2814 2.2507 1.5864 39 1 10.7345 2.8287 3.9367 40 1 9.0076 3.9556 5.2824 41 1 6.8262 4.5012 4.2790 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388212539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:15 Heat of formation + Delta-G solvation = 16.400415 kcal Electronic energy + Delta-G solvation = -18942.296069 eV Core-core repulsion = 16207.215668 eV Total energy + Delta-G solvation = -2735.080401 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13781 -39.19881 -36.93360 -34.41409 -33.17087 -31.80047 -31.53037 -28.87193 -26.38776 -24.61780 -24.18366 -23.19602 -21.57432 -21.51982 -21.03354 -19.27719 -17.67051 -16.79053 -16.54046 -16.07563 -15.72941 -15.52809 -15.07310 -14.89978 -14.77009 -14.30248 -14.13311 -13.99800 -13.74532 -13.46713 -13.21578 -12.94102 -12.90271 -12.76725 -12.28338 -12.09580 -11.97326 -11.87044 -11.82770 -11.66325 -11.31955 -10.92217 -10.72286 -10.57689 -9.63457 -9.43919 -9.03565 -8.41076 -6.44911 0.68621 0.75013 1.23557 1.24970 1.33140 2.21706 2.83585 2.90978 3.18692 3.44009 3.88428 4.00643 4.10820 4.15575 4.29540 4.30876 4.38964 4.47776 4.51955 4.53383 4.57696 4.66505 4.82543 4.85508 4.91317 4.92383 4.97860 5.01834 5.16823 5.25832 5.28219 5.30118 5.38310 5.38760 5.42717 5.53926 5.75386 5.79723 5.97155 6.03781 6.31900 6.41546 6.61098 6.74622 7.22230 8.75207 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015131 B = 0.006190 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.113197 B = 4522.503000 C = 5619.993783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.141 4.141 4 H 0.094 0.906 5 C -0.176 4.176 6 C -0.147 4.147 7 H 0.114 0.886 8 C 0.097 3.903 9 N -0.673 5.673 10 C 0.212 3.788 11 H 0.042 0.958 12 C -0.528 4.528 13 H 0.037 0.963 14 C 0.026 3.974 15 N -0.936 5.936 16 Si 0.925 3.075 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.247 1.247 20 C -0.048 4.048 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.143 4.143 24 C -0.122 4.122 25 C -0.155 4.155 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.008 0.992 35 H 0.333 0.667 36 H 0.267 0.733 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 -13.741 3.403 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.160 4.160 4 H 0.112 0.888 5 C -0.213 4.213 6 C -0.166 4.166 7 H 0.132 0.868 8 C -0.033 4.033 9 N -0.301 5.301 10 C 0.103 3.897 11 H 0.060 0.940 12 C -0.567 4.567 13 H 0.055 0.945 14 C -0.174 4.174 15 N -0.575 5.575 16 Si 0.749 3.251 17 H -0.188 1.188 18 H -0.211 1.211 19 H -0.172 1.172 20 C -0.049 4.049 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.161 4.161 24 C -0.140 4.140 25 C -0.174 4.174 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.026 0.974 35 H 0.150 0.850 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.404 -13.975 3.926 14.910 hybrid contribution -0.661 1.793 -0.455 1.964 sum -4.065 -12.182 3.471 13.303 Atomic orbital electron populations 1.21736 0.94709 1.02208 1.01790 1.21106 0.96517 0.92622 1.02339 1.22532 0.92613 0.99040 1.01768 0.88801 1.23229 1.04400 1.01897 0.91803 1.22325 0.95242 0.99409 0.99598 0.86804 1.21330 0.89051 0.94733 0.98145 1.61006 1.04914 1.42182 1.22028 1.18476 0.90560 0.87656 0.92997 0.94029 1.21675 1.29197 0.97227 1.08590 0.94458 1.25856 0.98109 0.95007 0.98410 1.70049 1.43635 1.01667 1.42192 0.86084 0.79996 0.78604 0.80398 1.18832 1.21142 1.17153 1.20238 0.96924 0.94318 0.93439 1.20925 0.93892 0.99524 0.99518 1.21400 0.96494 1.00248 0.96112 1.21335 1.00031 1.00345 0.94350 1.21308 0.92949 0.98994 1.00716 1.21119 0.98673 1.02528 0.95075 0.91436 0.92956 0.92731 0.91171 0.91481 0.90458 0.87317 0.92777 0.97358 0.84981 0.92410 0.87266 0.84157 0.83433 0.84104 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.87 71.98 0.71 -1.81 16 2 C -0.09 -1.77 6.22 30.59 0.19 -1.58 16 3 C -0.14 -3.61 5.46 -10.79 -0.06 -3.67 16 4 H 0.09 2.53 8.07 -2.39 -0.02 2.51 16 5 C -0.18 -4.84 9.82 30.60 0.30 -4.54 16 6 C -0.15 -4.48 5.67 -10.79 -0.06 -4.55 16 7 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 8 C 0.10 3.76 5.76 86.30 0.50 4.26 16 9 N -0.67 -27.88 5.83 -499.38 -2.91 -30.80 16 10 C 0.21 9.95 2.16 43.42 0.09 10.04 16 11 H 0.04 2.00 4.15 -2.39 -0.01 1.99 16 12 C -0.53 -29.44 8.58 25.60 0.22 -29.22 16 13 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 14 C 0.03 1.49 5.47 84.66 0.46 1.95 16 15 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 16 Si 0.92 43.90 27.03 68.60 1.85 45.75 16 17 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 19 H -0.25 -11.02 6.68 99.48 0.66 -10.36 16 20 C -0.05 -2.09 4.93 -19.87 -0.10 -2.19 16 21 C -0.12 -4.72 9.27 22.27 0.21 -4.52 16 22 C -0.12 -4.02 10.05 22.27 0.22 -3.80 16 23 C -0.14 -4.22 10.05 22.27 0.22 -3.99 16 24 C -0.12 -3.94 10.05 22.27 0.22 -3.72 16 25 C -0.16 -6.17 9.67 22.27 0.22 -5.95 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.07 1.29 7.87 -2.39 -0.02 1.27 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.08 2.36 8.03 -2.38 -0.02 2.35 16 32 H 0.11 2.54 8.03 -2.39 -0.02 2.52 16 33 H 0.05 2.12 8.06 -2.39 -0.02 2.10 16 34 H 0.01 0.36 7.73 -2.39 -0.02 0.34 16 35 H 0.33 13.88 7.91 -89.69 -0.71 13.17 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.11 4.26 7.45 -2.91 -0.02 4.24 16 38 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 41 H 0.11 4.12 8.00 -2.91 -0.02 4.09 16 Total: -1.00 -63.75 337.29 2.83 -60.92 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: 0.24 Total: 34.89 kcal Atomic # 6 Polarization: -56.65 SS G_CDS: 3.35 Total: -53.30 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -2.61 Total: -88.26 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.85 Total: 45.75 kcal Total: -63.75 2.83 -60.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388212539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.322 kcal (2) G-P(sol) polarization free energy of solvation -63.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds