Wall clock time and date at job start Mon Mar 30 2020 06:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46815 * 2 1 4 4 C 1.53008 * 115.54676 * 34.42096 * 3 2 1 5 5 C 1.52996 * 117.50065 * 248.74670 * 3 2 1 6 6 C 1.52999 * 117.49732 * 180.08563 * 3 2 1 7 7 H 1.09000 * 117.49808 * 359.97438 * 6 3 2 8 8 N 1.46901 * 117.49729 * 215.00704 * 6 3 2 9 9 C 1.46902 * 111.00131 * 154.99699 * 8 6 3 10 10 H 1.09005 * 109.46538 * 35.00063 * 9 8 6 11 11 C 1.50691 * 109.47597 * 275.00071 * 9 8 6 12 12 H 1.08006 * 119.99830 * 305.12208 * 11 9 8 13 13 C 1.37879 * 120.00241 * 125.11773 * 11 9 8 14 14 N 1.31510 * 120.00153 * 173.46247 * 13 11 9 15 15 Si 1.86804 * 119.99916 * 353.46158 * 13 11 9 16 16 H 1.48493 * 109.47062 * 85.60036 * 15 13 11 17 17 H 1.48500 * 109.47071 * 205.60282 * 15 13 11 18 18 H 1.48499 * 109.47051 * 325.60193 * 15 13 11 19 19 C 1.50700 * 109.47113 * 154.99774 * 9 8 6 20 20 C 1.38233 * 120.00156 * 45.65297 * 19 9 8 21 21 C 1.38234 * 120.00155 * 179.78429 * 20 19 9 22 22 C 1.38240 * 119.99776 * 0.45112 * 21 20 19 23 23 C 1.38231 * 120.00098 * 359.80591 * 22 21 20 24 24 C 1.38237 * 120.00030 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.47160 * 59.99978 * 1 2 3 26 26 H 1.09002 * 109.47416 * 299.99684 * 1 2 3 27 27 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47037 * 119.99984 * 2 1 3 29 29 H 1.09002 * 109.47416 * 240.00316 * 2 1 3 30 30 H 1.08995 * 109.47182 * 85.57966 * 4 3 2 31 31 H 1.09000 * 109.46342 * 205.58281 * 4 3 2 32 32 H 1.08996 * 109.46654 * 325.57794 * 4 3 2 33 33 H 1.08997 * 117.49917 * 359.97438 * 5 3 2 34 34 H 1.08995 * 117.49651 * 145.02525 * 5 3 2 35 35 H 1.00897 * 111.00236 * 278.95201 * 8 6 3 36 36 H 0.96999 * 120.00133 * 180.02562 * 14 13 11 37 37 H 1.08004 * 119.99673 * 0.02562 * 20 19 9 38 38 H 1.07998 * 119.99846 * 180.27256 * 21 20 19 39 39 H 1.07995 * 119.99582 * 179.83059 * 22 21 20 40 40 H 1.07997 * 120.00219 * 180.02562 * 23 22 21 41 41 H 1.08003 * 120.00213 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.1862 2.4442 0.7803 5 6 2.7392 1.9447 -1.2648 6 6 3.5549 1.6563 -0.0020 7 1 4.1883 0.7692 -0.0029 8 7 4.0785 2.8075 0.7453 9 6 5.4702 2.5793 1.1568 10 1 5.9875 2.0073 0.3865 11 6 5.4914 1.8106 2.4527 12 1 4.9534 2.1846 3.3113 13 6 6.1974 0.6297 2.5424 14 7 6.3233 0.0254 3.7036 15 14 6.9753 -0.1118 1.0144 16 1 8.3145 0.4922 0.7979 17 1 7.1170 -1.5791 1.1934 18 1 6.1126 0.1622 -0.1629 19 6 6.1614 3.9048 1.3476 20 6 5.5318 4.9185 2.0453 21 6 6.1676 6.1329 2.2241 22 6 7.4293 6.3366 1.6973 23 6 8.0568 5.3247 0.9950 24 6 7.4228 4.1088 0.8201 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.4791 2.4311 1.8301 31 1 1.3367 3.4442 0.3735 32 1 0.1347 2.1709 0.6930 33 1 2.8364 1.2473 -2.0968 34 1 2.5914 2.9887 -1.5407 35 1 3.9953 3.6565 0.2066 36 1 6.8203 -0.8052 3.7667 37 1 4.5446 4.7604 2.4540 38 1 5.6775 6.9233 2.7730 39 1 7.9249 7.2862 1.8347 40 1 9.0426 5.4837 0.5838 41 1 7.9131 3.3180 0.2717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397225905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:18 Heat of formation + Delta-G solvation = 42.535951 kcal Electronic energy + Delta-G solvation = -19522.254594 eV Core-core repulsion = 16788.307515 eV Total energy + Delta-G solvation = -2733.947079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.88554 -38.12334 -34.73845 -32.36850 -31.49777 -30.25364 -29.31251 -27.55850 -26.48723 -23.46063 -22.78444 -21.97889 -20.69396 -19.81013 -18.18353 -16.96511 -16.28410 -15.25577 -14.93727 -14.46235 -14.27009 -14.09615 -13.98525 -13.34763 -12.79892 -12.73595 -12.62461 -12.53272 -12.03572 -11.94261 -11.76336 -11.68957 -11.38060 -11.01307 -10.93711 -10.72372 -10.50131 -10.42861 -10.37387 -9.95101 -9.68233 -9.39423 -9.09906 -8.62974 -8.27334 -7.93128 -7.18106 -6.15564 -4.11921 2.04310 2.08537 3.18329 3.23572 3.28183 4.29537 4.30554 4.46595 4.79314 5.16970 5.26834 5.28484 5.47099 5.48925 5.50388 5.57540 5.61628 5.68619 5.89064 5.93299 5.94362 6.10572 6.14933 6.21482 6.22795 6.26477 6.37867 6.43284 6.48350 6.49461 6.60498 6.67247 6.68740 6.77365 6.93009 7.08856 7.13344 7.41928 7.49332 7.71413 7.97294 8.26283 8.62353 8.98089 9.46617 10.97347 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.007728 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.354567 B = 3622.103296 C = 4663.048270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.102 4.102 5 C -0.216 4.216 6 C 0.059 3.941 7 H 0.106 0.894 8 N -0.641 5.641 9 C 0.214 3.786 10 H 0.020 0.980 11 C -0.475 4.475 12 H 0.081 0.919 13 C 0.074 3.926 14 N -0.889 5.889 15 Si 0.866 3.134 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.044 4.044 20 C -0.101 4.101 21 C -0.126 4.126 22 C -0.147 4.147 23 C -0.124 4.124 24 C -0.130 4.130 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.315 0.685 36 H 0.265 0.735 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.030 5.773 -8.352 11.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.120 4.120 4 C -0.159 4.159 5 C -0.255 4.255 6 C -0.053 4.053 7 H 0.123 0.877 8 N -0.270 5.270 9 C 0.107 3.893 10 H 0.038 0.962 11 C -0.514 4.514 12 H 0.099 0.901 13 C -0.129 4.129 14 N -0.527 5.527 15 Si 0.694 3.306 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.045 4.045 20 C -0.120 4.120 21 C -0.144 4.144 22 C -0.165 4.165 23 C -0.142 4.142 24 C -0.149 4.149 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.075 0.925 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.186 5.404 -7.624 10.687 hybrid contribution 1.110 -0.478 -1.557 1.971 sum -4.076 4.926 -9.182 11.189 Atomic orbital electron populations 1.21803 0.96167 1.00732 1.01710 1.21028 0.95303 0.94350 1.01751 1.21674 0.95672 0.95566 0.99100 1.21194 0.97374 0.96632 1.00682 1.23760 1.08276 1.01138 0.92324 1.22504 0.92479 0.96668 0.93650 0.87662 1.60683 1.22650 1.01868 1.41809 1.18797 0.84035 0.89808 0.96660 0.96193 1.20798 1.29875 1.05037 0.95667 0.90052 1.25066 0.95578 0.96793 0.95482 1.69878 1.41079 1.18239 1.23477 0.87078 0.80207 0.78851 0.84421 1.20109 1.21310 1.19070 1.20525 0.94442 0.95387 0.94129 1.20999 1.00479 0.92292 0.98190 1.21077 0.95429 0.97556 1.00378 1.20887 0.96029 0.98728 1.00860 1.20942 0.99224 0.93921 1.00114 1.20990 0.95726 0.96783 1.01422 0.93121 0.92149 0.93430 0.91335 0.92615 0.91460 0.93364 0.93132 0.89909 0.89484 0.86624 0.92499 0.85685 0.87086 0.87312 0.87207 0.87307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.92 37.16 0.33 -1.49 16 2 C -0.09 -1.31 6.12 -26.73 -0.16 -1.47 16 3 C -0.12 -1.94 2.46 -154.50 -0.38 -2.32 16 4 C -0.10 -1.56 8.95 37.16 0.33 -1.23 16 5 C -0.22 -3.38 9.53 -26.70 -0.25 -3.63 16 6 C 0.06 1.12 5.77 -67.67 -0.39 0.73 16 7 H 0.11 2.28 5.97 -51.93 -0.31 1.97 16 8 N -0.64 -12.83 5.48 -102.14 -0.56 -13.39 16 9 C 0.21 4.84 2.08 -70.02 -0.15 4.69 16 10 H 0.02 0.47 4.05 -51.93 -0.21 0.26 16 11 C -0.48 -12.87 8.96 -34.44 -0.31 -13.18 16 12 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 14 N -0.89 -26.54 13.96 55.43 0.77 -25.76 16 15 Si 0.87 20.84 26.58 -169.99 -4.52 16.32 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.04 5.40 56.52 0.31 -5.73 16 19 C -0.04 -0.91 4.65 -104.62 -0.49 -1.40 16 20 C -0.10 -1.95 9.08 -39.58 -0.36 -2.31 16 21 C -0.13 -2.12 10.05 -39.58 -0.40 -2.51 16 22 C -0.15 -2.35 10.05 -39.58 -0.40 -2.75 16 23 C -0.12 -2.10 10.05 -39.58 -0.40 -2.50 16 24 C -0.13 -2.55 9.67 -39.58 -0.38 -2.93 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.74 6.45 -51.93 -0.33 0.41 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16 32 H 0.05 0.67 5.59 -51.93 -0.29 0.38 16 33 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 34 H 0.09 1.27 8.00 -51.93 -0.42 0.86 16 35 H 0.32 5.74 7.93 -39.29 -0.31 5.43 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.13 2.41 7.90 -52.48 -0.41 2.00 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 2.08 8.00 -52.48 -0.42 1.66 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -28.60 328.26 -9.41 -38.02 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.56 Total: 10.21 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: -3.50 Total: -30.34 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.21 Total: -39.16 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.52 Total: 16.32 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.60 -9.41 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397225905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.553 kcal (2) G-P(sol) polarization free energy of solvation -28.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds