Wall clock time and date at job start Mon Mar 30 2020 06:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46815 * 2 1 4 4 C 1.53008 * 115.54676 * 34.42096 * 3 2 1 5 5 C 1.52996 * 117.50065 * 248.74670 * 3 2 1 6 6 C 1.52999 * 117.49732 * 180.08563 * 3 2 1 7 7 H 1.09000 * 117.49808 * 359.97438 * 6 3 2 8 8 N 1.46901 * 117.49729 * 215.00704 * 6 3 2 9 9 C 1.46902 * 111.00131 * 154.99699 * 8 6 3 10 10 H 1.09005 * 109.46538 * 35.00063 * 9 8 6 11 11 C 1.50691 * 109.47597 * 275.00071 * 9 8 6 12 12 H 1.08006 * 119.99830 * 305.12208 * 11 9 8 13 13 C 1.37879 * 120.00241 * 125.11773 * 11 9 8 14 14 N 1.31510 * 120.00153 * 173.46247 * 13 11 9 15 15 Si 1.86804 * 119.99916 * 353.46158 * 13 11 9 16 16 H 1.48493 * 109.47062 * 85.60036 * 15 13 11 17 17 H 1.48500 * 109.47071 * 205.60282 * 15 13 11 18 18 H 1.48499 * 109.47051 * 325.60193 * 15 13 11 19 19 C 1.50700 * 109.47113 * 154.99774 * 9 8 6 20 20 C 1.38233 * 120.00156 * 45.65297 * 19 9 8 21 21 C 1.38234 * 120.00155 * 179.78429 * 20 19 9 22 22 C 1.38240 * 119.99776 * 0.45112 * 21 20 19 23 23 C 1.38231 * 120.00098 * 359.80591 * 22 21 20 24 24 C 1.38237 * 120.00030 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.47160 * 59.99978 * 1 2 3 26 26 H 1.09002 * 109.47416 * 299.99684 * 1 2 3 27 27 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47037 * 119.99984 * 2 1 3 29 29 H 1.09002 * 109.47416 * 240.00316 * 2 1 3 30 30 H 1.08995 * 109.47182 * 85.57966 * 4 3 2 31 31 H 1.09000 * 109.46342 * 205.58281 * 4 3 2 32 32 H 1.08996 * 109.46654 * 325.57794 * 4 3 2 33 33 H 1.08997 * 117.49917 * 359.97438 * 5 3 2 34 34 H 1.08995 * 117.49651 * 145.02525 * 5 3 2 35 35 H 1.00897 * 111.00236 * 278.95201 * 8 6 3 36 36 H 0.96999 * 120.00133 * 180.02562 * 14 13 11 37 37 H 1.08004 * 119.99673 * 0.02562 * 20 19 9 38 38 H 1.07998 * 119.99846 * 180.27256 * 21 20 19 39 39 H 1.07995 * 119.99582 * 179.83059 * 22 21 20 40 40 H 1.07997 * 120.00219 * 180.02562 * 23 22 21 41 41 H 1.08003 * 120.00213 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.1862 2.4442 0.7803 5 6 2.7392 1.9447 -1.2648 6 6 3.5549 1.6563 -0.0020 7 1 4.1883 0.7692 -0.0029 8 7 4.0785 2.8075 0.7453 9 6 5.4702 2.5793 1.1568 10 1 5.9875 2.0073 0.3865 11 6 5.4914 1.8106 2.4527 12 1 4.9534 2.1846 3.3113 13 6 6.1974 0.6297 2.5424 14 7 6.3233 0.0254 3.7036 15 14 6.9753 -0.1118 1.0144 16 1 8.3145 0.4922 0.7979 17 1 7.1170 -1.5791 1.1934 18 1 6.1126 0.1622 -0.1629 19 6 6.1614 3.9048 1.3476 20 6 5.5318 4.9185 2.0453 21 6 6.1676 6.1329 2.2241 22 6 7.4293 6.3366 1.6973 23 6 8.0568 5.3247 0.9950 24 6 7.4228 4.1088 0.8201 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.4791 2.4311 1.8301 31 1 1.3367 3.4442 0.3735 32 1 0.1347 2.1709 0.6930 33 1 2.8364 1.2473 -2.0968 34 1 2.5914 2.9887 -1.5407 35 1 3.9953 3.6565 0.2066 36 1 6.8203 -0.8052 3.7667 37 1 4.5446 4.7604 2.4540 38 1 5.6775 6.9233 2.7730 39 1 7.9249 7.2862 1.8347 40 1 9.0426 5.4837 0.5838 41 1 7.9131 3.3180 0.2717 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397225905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:18 Heat of formation + Delta-G solvation = 26.603322 kcal Electronic energy + Delta-G solvation = -19522.945485 eV Core-core repulsion = 16788.307515 eV Total energy + Delta-G solvation = -2734.637970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.35109 -39.48233 -36.35746 -34.24989 -32.92892 -31.65300 -30.71347 -28.85229 -28.38465 -24.67673 -24.39176 -23.39878 -22.10111 -21.47357 -19.55806 -18.99683 -17.69021 -16.76543 -16.45205 -16.10032 -15.67311 -15.58473 -15.29084 -14.88782 -14.63137 -14.18951 -14.11683 -13.86892 -13.51766 -13.38640 -13.05736 -12.96634 -12.79636 -12.58601 -12.51587 -12.23587 -11.93025 -11.84621 -11.76248 -11.63049 -11.43989 -10.98146 -10.84137 -10.40284 -9.67672 -9.41377 -8.75863 -8.31607 -6.31708 0.62476 0.66956 1.24180 1.25473 1.33881 2.26289 2.85200 3.00472 3.17052 3.36899 3.95759 4.02567 4.11097 4.21733 4.23904 4.26554 4.32829 4.42235 4.49080 4.62702 4.67293 4.78411 4.81675 4.88945 4.90899 4.99438 5.08318 5.09678 5.19175 5.22495 5.24660 5.32913 5.39775 5.45158 5.52601 5.67248 5.70535 5.73913 5.93661 6.12807 6.28480 6.51482 6.70324 6.92387 7.31407 8.85717 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.007728 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.354567 B = 3622.103296 C = 4663.048270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.118 4.118 4 C -0.097 4.097 5 C -0.183 4.183 6 C 0.018 3.982 7 H 0.075 0.925 8 N -0.642 5.642 9 C 0.224 3.776 10 H 0.013 0.987 11 C -0.471 4.471 12 H 0.031 0.969 13 C 0.017 3.983 14 N -0.943 5.943 15 Si 0.927 3.073 16 H -0.266 1.266 17 H -0.288 1.288 18 H -0.248 1.248 19 C -0.074 4.074 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.136 4.136 23 C -0.122 4.122 24 C -0.149 4.149 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.327 0.673 36 H 0.265 0.735 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.117 7.797 -10.844 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.154 4.154 5 C -0.221 4.221 6 C -0.093 4.093 7 H 0.093 0.907 8 N -0.271 5.271 9 C 0.116 3.884 10 H 0.030 0.970 11 C -0.510 4.510 12 H 0.050 0.950 13 C -0.181 4.181 14 N -0.584 5.584 15 Si 0.753 3.247 16 H -0.191 1.191 17 H -0.214 1.214 18 H -0.173 1.173 19 C -0.075 4.075 20 C -0.135 4.135 21 C -0.142 4.142 22 C -0.154 4.154 23 C -0.140 4.140 24 C -0.168 4.168 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.146 0.854 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.292 7.449 -10.141 13.651 hybrid contribution 1.093 -0.959 -0.740 1.631 sum -4.199 6.490 -10.881 13.347 Atomic orbital electron populations 1.21752 0.93722 1.01932 1.02347 1.21068 0.97459 0.93299 1.00922 1.21841 0.93683 0.96696 0.99671 1.21160 0.98614 0.96908 0.98703 1.23769 1.04513 1.02448 0.91393 1.22475 0.93907 0.95565 0.97398 0.90668 1.60427 1.21021 1.02797 1.42867 1.18505 0.85459 0.90476 0.93946 0.96962 1.20909 1.28492 1.05439 0.96156 0.95020 1.25820 0.96572 0.97330 0.98368 1.70035 1.43353 1.19099 1.25898 0.86080 0.79757 0.77676 0.81217 1.19069 1.21407 1.17288 1.20420 0.95447 0.95158 0.96441 1.21005 1.00417 0.93418 0.98636 1.21425 0.95892 0.97000 0.99857 1.21376 0.95346 0.99948 0.98736 1.21326 1.00374 0.92806 0.99453 1.21140 0.95354 0.98229 1.02079 0.91585 0.92275 0.92082 0.93953 0.91775 0.94338 0.92611 0.90651 0.88289 0.87822 0.85365 0.92631 0.86998 0.84094 0.83289 0.83997 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.92 71.98 0.64 -2.55 16 2 C -0.09 -2.64 6.12 30.60 0.19 -2.46 16 3 C -0.12 -3.76 2.46 -52.18 -0.13 -3.89 16 4 C -0.10 -2.90 8.95 71.98 0.64 -2.25 16 5 C -0.18 -5.31 9.53 30.62 0.29 -5.02 16 6 C 0.02 0.68 5.77 44.94 0.26 0.94 16 7 H 0.08 3.34 5.97 -2.39 -0.01 3.33 16 8 N -0.64 -26.34 5.48 -477.05 -2.62 -28.96 16 9 C 0.22 10.47 2.08 43.42 0.09 10.56 16 10 H 0.01 0.60 4.05 -2.38 -0.01 0.59 16 11 C -0.47 -27.08 8.96 25.60 0.23 -26.85 16 12 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 13 C 0.02 0.99 5.47 84.66 0.46 1.45 16 14 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 15 Si 0.93 44.59 26.58 68.60 1.82 46.42 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 18 H -0.25 -11.13 5.40 99.48 0.54 -10.59 16 19 C -0.07 -3.11 4.65 -19.87 -0.09 -3.20 16 20 C -0.12 -4.48 9.08 22.27 0.20 -4.27 16 21 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 22 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16 23 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 24 C -0.15 -5.70 9.67 22.27 0.22 -5.48 16 25 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 26 H 0.06 1.35 6.45 -2.39 -0.02 1.33 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.75 7.90 -2.39 -0.02 1.73 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.56 7.90 -2.39 -0.02 1.54 16 32 H 0.07 1.86 5.59 -2.39 -0.01 1.85 16 33 H 0.10 2.59 8.05 -2.39 -0.02 2.57 16 34 H 0.10 2.70 8.00 -2.39 -0.02 2.68 16 35 H 0.33 11.93 7.93 -89.70 -0.71 11.22 16 36 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 37 H 0.11 4.49 7.90 -2.91 -0.02 4.47 16 38 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.11 3.99 8.00 -2.91 -0.02 3.97 16 Total: -1.00 -66.61 328.26 3.30 -63.31 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.12 Total: 32.24 kcal Atomic # 6 Polarization: -57.44 SS G_CDS: 3.68 Total: -53.76 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.32 Total: -88.20 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.82 Total: 46.42 kcal Total: -66.61 3.30 -63.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397225905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.913 kcal (2) G-P(sol) polarization free energy of solvation -66.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds