Wall clock time and date at job start Mon Mar 30 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47432 * 2 1 4 4 C 1.52997 * 115.56134 * 34.30678 * 3 2 1 5 5 C 1.53074 * 117.49490 * 248.59607 * 3 2 1 6 6 C 1.52995 * 59.98547 * 252.51442 * 5 3 2 7 7 H 1.09003 * 117.50166 * 107.50026 * 6 5 3 8 8 N 1.46900 * 117.49795 * 252.49737 * 6 5 3 9 9 C 1.46899 * 111.00266 * 223.74648 * 8 6 5 10 10 H 1.08998 * 109.46881 * 325.00423 * 9 8 6 11 11 C 1.50699 * 109.46945 * 85.00109 * 9 8 6 12 12 H 1.08006 * 120.00127 * 245.06270 * 11 9 8 13 13 C 1.37871 * 120.00256 * 65.33297 * 11 9 8 14 14 N 1.31520 * 120.00014 * 347.45527 * 13 11 9 15 15 Si 1.86804 * 120.00320 * 167.45689 * 13 11 9 16 16 H 1.48494 * 109.47047 * 89.99945 * 15 13 11 17 17 H 1.48497 * 109.47228 * 210.00234 * 15 13 11 18 18 H 1.48496 * 109.47144 * 329.99963 * 15 13 11 19 19 C 1.50699 * 109.47646 * 205.00071 * 9 8 6 20 20 C 1.38234 * 120.00235 * 151.15562 * 19 9 8 21 21 C 1.38230 * 119.99836 * 179.79362 * 20 19 9 22 22 C 1.38237 * 120.00275 * 0.43596 * 21 20 19 23 23 C 1.38241 * 119.99656 * 359.81298 * 22 21 20 24 24 C 1.38233 * 120.00177 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47238 * 300.00344 * 1 2 3 26 26 H 1.09002 * 109.46423 * 60.00336 * 1 2 3 27 27 H 1.08992 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47238 * 239.99656 * 2 1 3 29 29 H 1.09005 * 109.47124 * 119.99862 * 2 1 3 30 30 H 1.09001 * 109.47043 * 205.68982 * 4 3 2 31 31 H 1.09000 * 109.47106 * 325.69358 * 4 3 2 32 32 H 1.09001 * 109.47110 * 85.68794 * 4 3 2 33 33 H 1.09000 * 117.51298 * 145.03319 * 5 3 2 34 34 H 1.09000 * 117.51206 * 359.97438 * 5 3 2 35 35 H 1.00903 * 111.00327 * 347.70604 * 8 6 5 36 36 H 0.96999 * 120.00181 * 179.97438 * 14 13 11 37 37 H 1.07998 * 119.99542 * 359.97438 * 20 19 9 38 38 H 1.07999 * 120.00250 * 180.27599 * 21 20 19 39 39 H 1.08003 * 120.00399 * 179.84159 * 22 21 20 40 40 H 1.07998 * 119.99625 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00249 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.1853 2.4449 0.7779 5 6 2.7429 1.9435 -1.2642 6 6 3.5551 1.6560 0.0001 7 1 4.1884 0.7689 0.0006 8 7 4.0776 2.8080 0.7471 9 6 5.4693 2.5809 1.1590 10 1 5.6104 1.5266 1.3967 11 6 6.3955 2.9711 0.0361 12 1 6.9998 2.2201 -0.4512 13 6 6.4758 4.2876 -0.3655 14 7 5.5807 5.1574 0.0493 15 14 7.8559 4.8361 -1.4987 16 1 7.4233 4.6906 -2.9118 17 1 8.1850 6.2581 -1.2256 18 1 9.0564 3.9954 -1.2594 19 6 5.7757 3.4156 2.3758 20 6 6.7229 2.9875 3.2870 21 6 7.0069 3.7552 4.4009 22 6 6.3372 4.9466 4.6083 23 6 5.3863 5.3722 3.6997 24 6 5.1054 4.6066 2.5835 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3353 3.4443 0.3695 31 1 0.1339 2.1707 0.6907 32 1 1.4776 2.4339 1.8279 33 1 2.5962 2.9873 -1.5417 34 1 2.8421 1.2454 -2.0954 35 1 3.9940 3.6568 0.2079 36 1 5.6373 6.0837 -0.2329 37 1 7.2431 2.0546 3.1271 38 1 7.7501 3.4229 5.1106 39 1 6.5573 5.5452 5.4799 40 1 4.8628 6.3028 3.8619 41 1 4.3622 4.9389 1.8738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397225906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:21 Heat of formation + Delta-G solvation = 42.233493 kcal Electronic energy + Delta-G solvation = -19714.433711 eV Core-core repulsion = 16980.473516 eV Total energy + Delta-G solvation = -2733.960195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.50647 -37.80480 -34.70339 -32.18508 -30.98163 -29.75407 -28.91224 -27.42658 -26.09422 -23.46031 -22.64348 -21.49744 -20.38736 -19.81954 -17.96980 -16.55801 -15.86306 -15.01895 -14.91357 -14.34788 -14.08473 -13.82672 -13.52608 -13.16331 -12.56687 -12.38408 -12.24954 -11.98591 -11.81451 -11.63142 -11.46802 -11.41839 -11.29902 -11.01283 -10.71657 -10.69765 -10.47245 -10.35132 -10.12689 -9.90276 -9.54449 -9.29999 -8.86897 -8.68718 -7.77727 -7.40772 -6.91696 -6.08184 -4.28658 2.54150 2.65738 3.21030 3.29736 3.33771 4.30753 4.50821 4.97038 5.08190 5.14924 5.32816 5.47181 5.62425 5.67334 5.77315 5.85180 5.96689 5.98930 6.04430 6.13700 6.18361 6.30918 6.36882 6.41420 6.47241 6.55392 6.61480 6.67358 6.71721 6.74746 6.88304 6.90807 7.03973 7.16895 7.32246 7.55821 7.65138 7.80444 8.00520 8.05918 8.25994 8.46036 8.82563 9.03611 9.42060 10.78735 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.007542 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.271964 B = 3711.446283 C = 4803.409067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.101 4.101 5 C -0.203 4.203 6 C 0.069 3.931 7 H 0.091 0.909 8 N -0.654 5.654 9 C 0.240 3.760 10 H 0.036 0.964 11 C -0.544 4.544 12 H 0.057 0.943 13 C 0.078 3.922 14 N -0.872 5.872 15 Si 0.887 3.113 16 H -0.281 1.281 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.019 4.019 20 C -0.132 4.132 21 C -0.145 4.145 22 C -0.152 4.152 23 C -0.149 4.149 24 C -0.048 4.048 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.367 0.633 36 H 0.267 0.733 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 -4.185 2.027 7.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.139 4.139 4 C -0.158 4.158 5 C -0.242 4.242 6 C -0.044 4.044 7 H 0.109 0.891 8 N -0.288 5.288 9 C 0.132 3.868 10 H 0.055 0.945 11 C -0.583 4.583 12 H 0.075 0.925 13 C -0.126 4.126 14 N -0.509 5.509 15 Si 0.715 3.285 16 H -0.207 1.207 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.020 4.020 20 C -0.151 4.151 21 C -0.163 4.163 22 C -0.170 4.170 23 C -0.167 4.167 24 C -0.067 4.067 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.193 0.807 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.142 -4.149 2.613 7.859 hybrid contribution 1.533 0.660 -1.580 2.298 sum -4.608 -3.489 1.033 5.872 Atomic orbital electron populations 1.21808 0.96338 1.00518 1.01852 1.20982 0.95201 0.94623 1.01150 1.21818 0.96298 0.95076 1.00741 1.21168 0.97126 0.97336 1.00141 1.23583 1.07526 1.01150 0.91952 1.22305 0.90667 0.96738 0.94647 0.89129 1.60555 1.21231 1.04065 1.42947 1.18156 0.85691 0.92792 0.90191 0.94546 1.21612 1.25710 0.93898 1.17056 0.92463 1.24927 0.95561 0.96429 0.95661 1.69662 1.33191 1.04138 1.43949 0.86667 0.83087 0.78071 0.80690 1.20735 1.20992 1.19898 1.20085 0.93071 0.95687 0.93165 1.20833 0.99375 0.99853 0.95046 1.20739 1.00992 0.96136 0.98472 1.20760 0.99285 0.97303 0.99647 1.21076 0.99554 0.99856 0.96261 1.21254 0.98950 0.92690 0.93823 0.92270 0.92963 0.93613 0.92584 0.92169 0.92998 0.93415 0.92173 0.89435 0.90336 0.80702 0.92303 0.87848 0.88158 0.88371 0.88175 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.92 37.16 0.33 -1.42 16 2 C -0.08 -1.14 6.12 -26.73 -0.16 -1.30 16 3 C -0.14 -2.27 2.47 -154.47 -0.38 -2.65 16 4 C -0.10 -1.61 8.95 37.16 0.33 -1.28 16 5 C -0.20 -3.61 9.52 -26.70 -0.25 -3.87 16 6 C 0.07 1.35 5.84 -67.72 -0.40 0.95 16 7 H 0.09 1.79 7.60 -51.93 -0.39 1.40 16 8 N -0.65 -14.38 5.01 -102.18 -0.51 -14.89 16 9 C 0.24 5.67 2.46 -70.02 -0.17 5.49 16 10 H 0.04 0.85 7.52 -51.93 -0.39 0.46 16 11 C -0.54 -13.95 8.72 -34.44 -0.30 -14.25 16 12 H 0.06 1.49 7.84 -52.48 -0.41 1.08 16 13 C 0.08 2.00 5.02 -17.82 -0.09 1.91 16 14 N -0.87 -22.03 8.13 55.43 0.45 -21.58 16 15 Si 0.89 20.51 29.56 -169.99 -5.02 15.48 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.02 -0.44 4.63 -104.62 -0.48 -0.93 16 20 C -0.13 -2.87 9.71 -39.59 -0.38 -3.25 16 21 C -0.15 -2.86 10.05 -39.58 -0.40 -3.25 16 22 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 23 C -0.15 -3.10 10.05 -39.58 -0.40 -3.49 16 24 C -0.05 -1.11 7.47 -39.58 -0.30 -1.41 16 25 H 0.06 0.69 6.45 -51.93 -0.33 0.36 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.75 7.90 -51.93 -0.41 0.34 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 31 H 0.05 0.66 5.58 -51.93 -0.29 0.37 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.65 8.00 -51.93 -0.42 1.23 16 34 H 0.08 1.29 8.05 -51.93 -0.42 0.88 16 35 H 0.37 8.71 5.69 -39.29 -0.22 8.49 16 36 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 37 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 38 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.10 1.63 8.06 -52.48 -0.42 1.20 16 40 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.14 3.38 5.71 -52.49 -0.30 3.08 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -25.14 325.34 -10.15 -35.29 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -6.52 Total: 12.89 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: -3.45 Total: -32.09 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.06 Total: -36.47 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -25.14 -10.15 -35.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397225906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.522 kcal (2) G-P(sol) polarization free energy of solvation -25.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds