Wall clock time and date at job start Mon Mar 30 2020 06:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47432 * 2 1 4 4 C 1.52997 * 115.56134 * 34.30678 * 3 2 1 5 5 C 1.53074 * 117.49490 * 248.59607 * 3 2 1 6 6 C 1.52995 * 59.98547 * 252.51442 * 5 3 2 7 7 H 1.09003 * 117.50166 * 107.50026 * 6 5 3 8 8 N 1.46900 * 117.49795 * 252.49737 * 6 5 3 9 9 C 1.46899 * 111.00266 * 223.74648 * 8 6 5 10 10 H 1.08998 * 109.46881 * 325.00423 * 9 8 6 11 11 C 1.50699 * 109.46945 * 85.00109 * 9 8 6 12 12 H 1.08006 * 120.00127 * 245.06270 * 11 9 8 13 13 C 1.37871 * 120.00256 * 65.33297 * 11 9 8 14 14 N 1.31520 * 120.00014 * 347.45527 * 13 11 9 15 15 Si 1.86804 * 120.00320 * 167.45689 * 13 11 9 16 16 H 1.48494 * 109.47047 * 89.99945 * 15 13 11 17 17 H 1.48497 * 109.47228 * 210.00234 * 15 13 11 18 18 H 1.48496 * 109.47144 * 329.99963 * 15 13 11 19 19 C 1.50699 * 109.47646 * 205.00071 * 9 8 6 20 20 C 1.38234 * 120.00235 * 151.15562 * 19 9 8 21 21 C 1.38230 * 119.99836 * 179.79362 * 20 19 9 22 22 C 1.38237 * 120.00275 * 0.43596 * 21 20 19 23 23 C 1.38241 * 119.99656 * 359.81298 * 22 21 20 24 24 C 1.38233 * 120.00177 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47238 * 300.00344 * 1 2 3 26 26 H 1.09002 * 109.46423 * 60.00336 * 1 2 3 27 27 H 1.08992 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47238 * 239.99656 * 2 1 3 29 29 H 1.09005 * 109.47124 * 119.99862 * 2 1 3 30 30 H 1.09001 * 109.47043 * 205.68982 * 4 3 2 31 31 H 1.09000 * 109.47106 * 325.69358 * 4 3 2 32 32 H 1.09001 * 109.47110 * 85.68794 * 4 3 2 33 33 H 1.09000 * 117.51298 * 145.03319 * 5 3 2 34 34 H 1.09000 * 117.51206 * 359.97438 * 5 3 2 35 35 H 1.00903 * 111.00327 * 347.70604 * 8 6 5 36 36 H 0.96999 * 120.00181 * 179.97438 * 14 13 11 37 37 H 1.07998 * 119.99542 * 359.97438 * 20 19 9 38 38 H 1.07999 * 120.00250 * 180.27599 * 21 20 19 39 39 H 1.08003 * 120.00399 * 179.84159 * 22 21 20 40 40 H 1.07998 * 119.99625 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00249 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.1853 2.4449 0.7779 5 6 2.7429 1.9435 -1.2642 6 6 3.5551 1.6560 0.0001 7 1 4.1884 0.7689 0.0006 8 7 4.0776 2.8080 0.7471 9 6 5.4693 2.5809 1.1590 10 1 5.6104 1.5266 1.3967 11 6 6.3955 2.9711 0.0361 12 1 6.9998 2.2201 -0.4512 13 6 6.4758 4.2876 -0.3655 14 7 5.5807 5.1574 0.0493 15 14 7.8559 4.8361 -1.4987 16 1 7.4233 4.6906 -2.9118 17 1 8.1850 6.2581 -1.2256 18 1 9.0564 3.9954 -1.2594 19 6 5.7757 3.4156 2.3758 20 6 6.7229 2.9875 3.2870 21 6 7.0069 3.7552 4.4009 22 6 6.3372 4.9466 4.6083 23 6 5.3863 5.3722 3.6997 24 6 5.1054 4.6066 2.5835 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3353 3.4443 0.3695 31 1 0.1339 2.1707 0.6907 32 1 1.4776 2.4339 1.8279 33 1 2.5962 2.9873 -1.5417 34 1 2.8421 1.2454 -2.0954 35 1 3.9940 3.6568 0.2079 36 1 5.6373 6.0837 -0.2329 37 1 7.2431 2.0546 3.1271 38 1 7.7501 3.4229 5.1106 39 1 6.5573 5.5452 5.4799 40 1 4.8628 6.3028 3.8619 41 1 4.3622 4.9389 1.8738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397225906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:20 Heat of formation + Delta-G solvation = 31.947532 kcal Electronic energy + Delta-G solvation = -19714.879744 eV Core-core repulsion = 16980.473516 eV Total energy + Delta-G solvation = -2734.406228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09614 -39.30357 -36.39858 -33.73879 -32.56674 -31.37869 -30.46879 -28.78160 -27.94469 -24.72195 -24.29546 -23.12185 -21.92167 -21.52883 -19.33525 -18.45787 -17.45091 -16.84233 -16.36828 -15.85246 -15.46141 -15.28288 -15.19242 -14.77053 -13.99513 -13.89434 -13.81542 -13.58159 -13.33705 -13.20210 -12.99565 -12.87201 -12.80765 -12.55723 -12.48229 -12.26052 -11.90887 -11.80148 -11.56325 -11.53114 -11.29612 -10.88579 -10.63718 -10.28479 -9.42017 -9.10612 -8.64266 -7.96676 -6.27020 0.88426 1.02916 1.34750 1.39758 1.46607 2.38699 3.00522 3.14572 3.38517 3.67825 4.06136 4.16055 4.30475 4.33857 4.39385 4.41937 4.54327 4.60174 4.71256 4.82928 4.85241 4.92454 4.97283 5.04483 5.10441 5.15171 5.20351 5.21946 5.24389 5.30803 5.44642 5.48671 5.51835 5.66383 5.68210 5.74713 5.92397 6.08711 6.11091 6.37241 6.53779 6.62804 6.99164 7.18416 7.45472 8.82617 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.007542 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.271964 B = 3711.446283 C = 4803.409067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.114 4.114 4 C -0.098 4.098 5 C -0.200 4.200 6 C 0.035 3.965 7 H 0.081 0.919 8 N -0.651 5.651 9 C 0.241 3.759 10 H 0.025 0.975 11 C -0.563 4.563 12 H 0.041 0.959 13 C 0.048 3.952 14 N -0.875 5.875 15 Si 0.934 3.066 16 H -0.279 1.279 17 H -0.283 1.283 18 H -0.279 1.279 19 C -0.044 4.044 20 C -0.150 4.150 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.066 4.066 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.355 0.645 36 H 0.265 0.735 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.120 0.880 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 -4.205 2.926 8.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.115 4.115 4 C -0.155 4.155 5 C -0.239 4.239 6 C -0.077 4.077 7 H 0.099 0.901 8 N -0.283 5.283 9 C 0.133 3.867 10 H 0.043 0.957 11 C -0.602 4.602 12 H 0.060 0.940 13 C -0.156 4.156 14 N -0.512 5.512 15 Si 0.761 3.239 16 H -0.205 1.205 17 H -0.209 1.209 18 H -0.205 1.205 19 C -0.045 4.045 20 C -0.168 4.168 21 C -0.160 4.160 22 C -0.165 4.165 23 C -0.175 4.175 24 C -0.085 4.085 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.178 0.822 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.634 -4.185 3.514 8.595 hybrid contribution 1.684 0.646 -1.820 2.562 sum -4.950 -3.538 1.695 6.316 Atomic orbital electron populations 1.21774 0.94255 1.01982 1.02075 1.21027 0.96960 0.92428 1.01528 1.21926 0.93857 0.96887 0.98860 1.21159 0.98746 0.96499 0.99071 1.23557 1.07194 1.00832 0.92340 1.22419 0.92690 0.95876 0.96666 0.90089 1.60599 1.20243 1.04219 1.43201 1.18069 0.86237 0.92190 0.90215 0.95691 1.21723 1.26315 0.93963 1.18172 0.94031 1.25380 0.96951 0.96484 0.96772 1.69780 1.33398 1.03937 1.44084 0.85937 0.80982 0.77415 0.79521 1.20467 1.20862 1.20455 1.20172 0.94381 0.96228 0.93767 1.21061 0.99331 1.00686 0.95769 1.21133 1.01103 0.95745 0.98018 1.21176 0.97920 0.97287 1.00155 1.21357 1.00033 1.00330 0.95737 1.21147 0.99260 0.93287 0.94767 0.92037 0.92684 0.91636 0.91974 0.92119 0.94486 0.90551 0.93331 0.90779 0.88916 0.82158 0.92467 0.87336 0.84781 0.84697 0.86179 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.92 71.98 0.64 -2.36 16 2 C -0.08 -2.14 6.12 30.59 0.19 -1.95 16 3 C -0.11 -3.70 2.47 -52.16 -0.13 -3.83 16 4 C -0.10 -3.08 8.95 71.98 0.64 -2.44 16 5 C -0.20 -7.19 9.52 30.62 0.29 -6.90 16 6 C 0.04 1.43 5.84 44.91 0.26 1.69 16 7 H 0.08 3.36 7.60 -2.39 -0.02 3.34 16 8 N -0.65 -29.77 5.01 -477.19 -2.39 -32.16 16 9 C 0.24 11.88 2.46 43.42 0.11 11.98 16 10 H 0.02 1.23 7.52 -2.39 -0.02 1.21 16 11 C -0.56 -29.86 8.72 25.60 0.22 -29.63 16 12 H 0.04 2.26 7.84 -2.91 -0.02 2.24 16 13 C 0.05 2.47 5.02 84.65 0.42 2.89 16 14 N -0.88 -45.11 8.13 21.45 0.17 -44.93 16 15 Si 0.93 42.56 29.56 68.60 2.03 44.59 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 C -0.04 -2.12 4.63 -19.87 -0.09 -2.21 16 20 C -0.15 -6.44 9.71 22.27 0.22 -6.23 16 21 C -0.14 -5.25 10.05 22.27 0.22 -5.03 16 22 C -0.15 -5.31 10.05 22.27 0.22 -5.08 16 23 C -0.16 -6.28 10.05 22.27 0.22 -6.06 16 24 C -0.07 -3.05 7.47 22.27 0.17 -2.88 16 25 H 0.06 1.26 6.45 -2.39 -0.02 1.25 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.56 7.90 -2.39 -0.02 1.54 16 29 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.04 1.26 7.90 -2.39 -0.02 1.24 16 31 H 0.08 1.96 5.58 -2.39 -0.01 1.94 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.85 8.00 -2.39 -0.02 2.83 16 34 H 0.09 3.01 8.05 -2.39 -0.02 3.00 16 35 H 0.35 17.58 5.69 -89.69 -0.51 17.07 16 36 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 37 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 40 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.12 6.04 5.71 -2.91 -0.02 6.02 16 Total: -1.00 -54.43 325.34 3.91 -50.52 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: 0.49 Total: 40.03 kcal Atomic # 6 Polarization: -61.66 SS G_CDS: 3.61 Total: -58.04 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.22 Total: -77.09 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -54.43 3.91 -50.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397225906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.463 kcal (2) G-P(sol) polarization free energy of solvation -54.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds