Wall clock time and date at job start Mon Mar 30 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38229 * 120.00411 * 2 1 4 4 C 1.38239 * 119.99815 * 180.29404 * 3 2 1 5 5 C 1.38224 * 120.00246 * 359.70244 * 4 3 2 6 6 C 1.38237 * 120.00105 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00092 * 179.97438 * 6 5 4 8 8 C 1.38233 * 119.99438 * 179.74234 * 2 1 3 9 9 C 1.50697 * 120.00377 * 0.02562 * 8 2 1 10 10 N 1.46907 * 109.47242 * 269.76718 * 9 8 2 11 11 C 1.48556 * 110.99554 * 63.80077 * 10 9 8 12 12 C 1.54379 * 104.59403 * 200.96010 * 11 10 9 13 13 C 1.54250 * 105.06109 * 23.85616 * 12 11 10 14 14 H 1.09002 * 110.32610 * 241.00146 * 13 12 11 15 15 C 1.50699 * 110.32835 * 118.89486 * 13 12 11 16 16 H 1.08000 * 120.00310 * 241.45373 * 15 13 12 17 17 C 1.37877 * 120.00070 * 61.45323 * 15 13 12 18 18 N 1.31517 * 119.99707 * 0.02562 * 17 15 13 19 19 Si 1.86793 * 120.00211 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47098 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47298 * 239.99875 * 19 17 15 22 22 H 1.48508 * 109.47141 * 119.99837 * 19 17 15 23 23 C 1.48558 * 110.99772 * 308.38553 * 10 9 8 24 24 H 1.09004 * 109.47203 * 276.29203 * 1 2 3 25 25 H 1.08999 * 109.47278 * 36.28863 * 1 2 3 26 26 H 1.08998 * 109.47496 * 156.28924 * 1 2 3 27 27 H 1.07998 * 119.99749 * 0.02562 * 3 2 1 28 28 H 1.08007 * 119.99413 * 179.72095 * 4 3 2 29 29 H 1.07997 * 120.00615 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47135 * 270.02037 * 7 6 5 31 31 H 1.08998 * 109.47094 * 30.01998 * 7 6 5 32 32 H 1.09003 * 109.47136 * 150.01684 * 7 6 5 33 33 H 1.09009 * 109.47368 * 149.77242 * 9 8 2 34 34 H 1.09000 * 109.47281 * 29.76938 * 9 8 2 35 35 H 1.09000 * 110.41385 * 82.17958 * 11 10 9 36 36 H 1.09000 * 110.41586 * 319.74093 * 11 10 9 37 37 H 1.09001 * 110.32323 * 264.95194 * 12 11 10 38 38 H 1.09008 * 110.40706 * 142.79444 * 12 11 10 39 39 H 0.97006 * 120.00368 * 359.97438 * 18 17 15 40 40 H 1.08995 * 110.41351 * 40.25956 * 23 10 9 41 41 H 1.08997 * 110.40906 * 277.80892 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1969 -0.0061 5 6 4.2717 -0.0002 -0.0061 6 6 3.5805 -1.1973 -0.0004 7 6 4.3339 -2.5024 -0.0009 8 6 2.1981 -1.1972 0.0054 9 6 1.4445 -2.5022 0.0107 10 7 1.2040 -2.9232 1.3974 11 6 0.3285 -1.9531 2.1039 12 6 0.6010 -2.2030 3.6028 13 6 2.0066 -2.8362 3.6545 14 1 1.9568 -3.8336 4.0914 15 6 2.9447 -1.9642 4.4486 16 1 3.8186 -1.5407 3.9761 17 6 2.6873 -1.7070 5.7785 18 7 1.6233 -2.2231 6.3541 19 14 3.8496 -0.6256 6.7627 20 1 4.9621 -0.1720 5.8899 21 1 4.3995 -1.4002 7.9041 22 1 3.1110 0.5560 7.2764 23 6 2.4652 -2.9156 2.1824 24 1 -0.3634 0.1126 1.0215 25 1 -0.3634 0.8283 -0.6082 26 1 -0.3634 -0.9409 -0.4132 27 1 1.6583 2.1324 0.0004 28 1 4.1206 2.1323 -0.0107 29 1 5.3516 -0.0004 -0.0113 30 1 4.5113 -2.8192 -1.0286 31 1 5.2884 -2.3711 0.5087 32 1 3.7469 -3.2610 0.5170 33 1 2.0320 -3.2632 -0.5033 34 1 0.4905 -2.3730 -0.5005 35 1 -0.7187 -2.1460 1.8706 36 1 0.5970 -0.9318 1.8339 37 1 -0.1392 -2.8902 4.0127 38 1 0.5890 -1.2623 4.1534 39 1 1.0195 -2.7844 5.8429 40 1 3.0682 -2.0450 1.9247 41 1 3.0269 -3.8333 2.0083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397585907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:53 Heat of formation + Delta-G solvation = 28.946420 kcal Electronic energy + Delta-G solvation = -20491.633974 eV Core-core repulsion = 17757.097609 eV Total energy + Delta-G solvation = -2734.536366 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33058 -37.51846 -33.98007 -33.68676 -31.94921 -29.74747 -28.29256 -27.35471 -26.31624 -24.96670 -23.67550 -21.48498 -20.51995 -19.53598 -19.36111 -16.94764 -16.17939 -15.62866 -15.19007 -14.81446 -14.33755 -13.99851 -13.71018 -13.29858 -12.93064 -12.76126 -12.72216 -12.59378 -12.26736 -11.92404 -11.70910 -11.49222 -11.37469 -10.98210 -10.86491 -10.77665 -10.48063 -10.35062 -10.31569 -10.10571 -9.76757 -9.30989 -8.47925 -8.36220 -8.26611 -8.23977 -7.79445 -6.28578 -3.99865 1.58859 1.59942 3.44992 3.48331 3.61958 3.93465 4.54745 4.74473 4.95482 5.02702 5.12259 5.18572 5.28454 5.42781 5.47427 5.59334 5.68535 5.74965 5.80059 5.83128 5.84869 5.88705 6.03452 6.09128 6.10639 6.25716 6.34461 6.41036 6.46155 6.53429 6.68701 6.75649 6.77452 6.90533 6.98002 7.02460 7.26618 7.36433 7.50732 7.62848 7.75242 8.33675 8.49770 8.95172 9.71876 11.10286 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.007833 C = 0.007071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.800809 B = 3573.789922 C = 3958.984536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 C -0.129 4.129 4 C -0.115 4.115 5 C -0.128 4.128 6 C -0.063 4.063 7 C -0.132 4.132 8 C -0.113 4.113 9 C 0.075 3.925 10 N -0.505 5.505 11 C 0.018 3.982 12 C -0.113 4.113 13 C 0.033 3.967 14 H 0.020 0.980 15 C -0.588 4.588 16 H 0.047 0.953 17 C 0.019 3.981 18 N -0.915 5.915 19 Si 1.068 2.932 20 H -0.290 1.290 21 H -0.287 1.287 22 H -0.288 1.288 23 C 0.034 3.966 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.273 0.727 40 H 0.060 0.940 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 3.866 -14.400 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.073 4.073 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.146 4.146 6 C -0.063 4.063 7 C -0.189 4.189 8 C -0.114 4.114 9 C -0.053 4.053 10 N -0.227 5.227 11 C -0.109 4.109 12 C -0.152 4.152 13 C 0.014 3.986 14 H 0.039 0.961 15 C -0.627 4.627 16 H 0.065 0.935 17 C -0.185 4.185 18 N -0.551 5.551 19 Si 0.898 3.102 20 H -0.216 1.216 21 H -0.214 1.214 22 H -0.215 1.215 23 C -0.093 4.093 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.728 3.942 -12.925 13.532 hybrid contribution 0.204 0.320 -1.437 1.486 sum 0.932 4.262 -14.362 15.010 Atomic orbital electron populations 1.21155 0.91614 1.02486 1.02763 1.19696 0.95777 0.92658 0.99187 1.20905 0.94272 0.97221 1.02295 1.21016 0.94279 0.97723 1.00302 1.20956 0.99476 0.92140 1.01997 1.19719 0.93136 0.95378 0.98099 1.21224 1.00513 0.95262 1.01859 1.20277 0.93670 0.96189 1.01297 1.21419 0.98920 0.91736 0.93252 1.65772 1.12762 1.43931 1.00198 1.23537 0.96076 0.95266 0.96025 1.22491 0.99002 1.01039 0.92638 1.19528 0.92258 0.96166 0.90656 0.96149 1.22036 1.10278 1.33100 0.97284 0.93470 1.25707 0.98883 0.98283 0.95651 1.70706 1.12800 1.31480 1.40115 0.83551 0.75151 0.76082 0.75449 1.21644 1.21386 1.21469 1.23549 0.90817 0.99710 0.95244 0.90200 0.92084 0.91147 0.86533 0.86486 0.86469 0.91784 0.91550 0.89591 0.90369 0.90365 0.92191 0.92396 0.94058 0.91549 0.91520 0.92191 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 8.23 36.01 0.30 -1.33 16 2 C -0.07 -1.12 4.85 -104.63 -0.51 -1.63 16 3 C -0.13 -1.90 9.73 -39.58 -0.39 -2.28 16 4 C -0.11 -1.66 10.05 -39.59 -0.40 -2.06 16 5 C -0.13 -1.94 9.70 -39.59 -0.38 -2.32 16 6 C -0.06 -1.00 4.45 -104.62 -0.47 -1.47 16 7 C -0.13 -1.89 8.42 36.00 0.30 -1.59 16 8 C -0.11 -1.83 3.94 -104.62 -0.41 -2.25 16 9 C 0.07 1.18 5.14 -4.97 -0.03 1.16 16 10 N -0.50 -9.62 5.65 -231.41 -1.31 -10.93 16 11 C 0.02 0.36 5.11 -2.18 -0.01 0.35 16 12 C -0.11 -2.69 5.03 -25.35 -0.13 -2.81 16 13 C 0.03 0.84 2.65 -90.39 -0.24 0.60 16 14 H 0.02 0.57 8.04 -51.93 -0.42 0.15 16 15 C -0.59 -16.60 8.37 -34.44 -0.29 -16.89 16 16 H 0.05 1.35 7.58 -52.49 -0.40 0.95 16 17 C 0.02 0.54 5.09 -17.82 -0.09 0.45 16 18 N -0.91 -27.59 13.27 55.43 0.74 -26.86 16 19 Si 1.07 25.69 29.90 -169.99 -5.08 20.61 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.03 0.72 4.18 -2.18 -0.01 0.71 16 24 H 0.08 1.12 6.26 -51.93 -0.33 0.79 16 25 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 26 H 0.07 0.88 5.68 -51.93 -0.29 0.58 16 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 32 H 0.09 1.34 3.63 -51.93 -0.19 1.15 16 33 H 0.08 1.15 6.70 -51.92 -0.35 0.80 16 34 H 0.08 1.11 5.88 -51.93 -0.31 0.81 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.13 3.42 -51.93 -0.18 0.95 16 37 H 0.04 0.97 7.92 -51.93 -0.41 0.56 16 38 H 0.07 1.74 7.23 -51.92 -0.38 1.37 16 39 H 0.27 8.19 6.00 -40.82 -0.25 7.94 16 40 H 0.06 1.33 3.97 -51.93 -0.21 1.12 16 41 H 0.06 1.22 6.99 -51.93 -0.36 0.85 16 LS Contribution 301.06 15.07 4.54 4.54 Total: -1.00 -30.53 301.06 -9.67 -40.20 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.81 Total: 3.79 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: -2.74 Total: -31.35 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.57 Total: -37.79 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.53 -9.67 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397585907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.148 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds