Wall clock time and date at job start Mon Mar 30 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38229 * 120.00411 * 2 1 4 4 C 1.38239 * 119.99815 * 180.29404 * 3 2 1 5 5 C 1.38224 * 120.00246 * 359.70244 * 4 3 2 6 6 C 1.38237 * 120.00105 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00092 * 179.97438 * 6 5 4 8 8 C 1.38233 * 119.99438 * 179.74234 * 2 1 3 9 9 C 1.50697 * 120.00377 * 0.02562 * 8 2 1 10 10 N 1.46907 * 109.47242 * 269.76718 * 9 8 2 11 11 C 1.48556 * 110.99554 * 63.80077 * 10 9 8 12 12 C 1.54379 * 104.59403 * 200.96010 * 11 10 9 13 13 C 1.54250 * 105.06109 * 23.85616 * 12 11 10 14 14 H 1.09002 * 110.32610 * 241.00146 * 13 12 11 15 15 C 1.50699 * 110.32835 * 118.89486 * 13 12 11 16 16 H 1.08000 * 120.00310 * 241.45373 * 15 13 12 17 17 C 1.37877 * 120.00070 * 61.45323 * 15 13 12 18 18 N 1.31517 * 119.99707 * 0.02562 * 17 15 13 19 19 Si 1.86793 * 120.00211 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47098 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47298 * 239.99875 * 19 17 15 22 22 H 1.48508 * 109.47141 * 119.99837 * 19 17 15 23 23 C 1.48558 * 110.99772 * 308.38553 * 10 9 8 24 24 H 1.09004 * 109.47203 * 276.29203 * 1 2 3 25 25 H 1.08999 * 109.47278 * 36.28863 * 1 2 3 26 26 H 1.08998 * 109.47496 * 156.28924 * 1 2 3 27 27 H 1.07998 * 119.99749 * 0.02562 * 3 2 1 28 28 H 1.08007 * 119.99413 * 179.72095 * 4 3 2 29 29 H 1.07997 * 120.00615 * 179.97438 * 5 4 3 30 30 H 1.08997 * 109.47135 * 270.02037 * 7 6 5 31 31 H 1.08998 * 109.47094 * 30.01998 * 7 6 5 32 32 H 1.09003 * 109.47136 * 150.01684 * 7 6 5 33 33 H 1.09009 * 109.47368 * 149.77242 * 9 8 2 34 34 H 1.09000 * 109.47281 * 29.76938 * 9 8 2 35 35 H 1.09000 * 110.41385 * 82.17958 * 11 10 9 36 36 H 1.09000 * 110.41586 * 319.74093 * 11 10 9 37 37 H 1.09001 * 110.32323 * 264.95194 * 12 11 10 38 38 H 1.09008 * 110.40706 * 142.79444 * 12 11 10 39 39 H 0.97006 * 120.00368 * 359.97438 * 18 17 15 40 40 H 1.08995 * 110.41351 * 40.25956 * 23 10 9 41 41 H 1.08997 * 110.40906 * 277.80892 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1969 -0.0061 5 6 4.2717 -0.0002 -0.0061 6 6 3.5805 -1.1973 -0.0004 7 6 4.3339 -2.5024 -0.0009 8 6 2.1981 -1.1972 0.0054 9 6 1.4445 -2.5022 0.0107 10 7 1.2040 -2.9232 1.3974 11 6 0.3285 -1.9531 2.1039 12 6 0.6010 -2.2030 3.6028 13 6 2.0066 -2.8362 3.6545 14 1 1.9568 -3.8336 4.0914 15 6 2.9447 -1.9642 4.4486 16 1 3.8186 -1.5407 3.9761 17 6 2.6873 -1.7070 5.7785 18 7 1.6233 -2.2231 6.3541 19 14 3.8496 -0.6256 6.7627 20 1 4.9621 -0.1720 5.8899 21 1 4.3995 -1.4002 7.9041 22 1 3.1110 0.5560 7.2764 23 6 2.4652 -2.9156 2.1824 24 1 -0.3634 0.1126 1.0215 25 1 -0.3634 0.8283 -0.6082 26 1 -0.3634 -0.9409 -0.4132 27 1 1.6583 2.1324 0.0004 28 1 4.1206 2.1323 -0.0107 29 1 5.3516 -0.0004 -0.0113 30 1 4.5113 -2.8192 -1.0286 31 1 5.2884 -2.3711 0.5087 32 1 3.7469 -3.2610 0.5170 33 1 2.0320 -3.2632 -0.5033 34 1 0.4905 -2.3730 -0.5005 35 1 -0.7187 -2.1460 1.8706 36 1 0.5970 -0.9318 1.8339 37 1 -0.1392 -2.8902 4.0127 38 1 0.5890 -1.2623 4.1534 39 1 1.0195 -2.7844 5.8429 40 1 3.0682 -2.0450 1.9247 41 1 3.0269 -3.8333 2.0083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397585907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:52 Heat of formation + Delta-G solvation = 11.084532 kcal Electronic energy + Delta-G solvation = -20492.408524 eV Core-core repulsion = 17757.097609 eV Total energy + Delta-G solvation = -2735.310915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.61290 -39.04629 -35.78270 -34.81381 -33.55356 -31.27700 -30.00863 -28.61782 -27.52133 -26.52963 -25.53806 -22.90037 -21.68013 -21.41363 -20.73947 -19.00067 -17.42463 -16.82466 -16.76675 -16.33466 -15.72769 -15.61012 -15.37770 -14.78152 -14.29799 -14.08270 -13.96206 -13.84479 -13.58058 -13.29726 -13.26462 -13.07982 -12.83036 -12.61857 -12.42061 -12.16593 -12.03637 -11.96544 -11.86510 -11.60161 -11.57589 -11.19853 -10.56307 -10.43513 -9.58925 -9.42272 -9.28301 -8.57852 -6.29955 0.43787 0.46401 1.49237 1.58142 1.74136 2.55118 2.78796 3.20850 3.26168 3.82579 3.88516 3.96287 4.04462 4.07321 4.12102 4.32493 4.36977 4.44516 4.46502 4.60530 4.67790 4.73438 4.76516 4.78033 4.81957 4.86806 4.90146 4.98539 5.03849 5.11208 5.22231 5.29845 5.36374 5.40229 5.57155 5.62869 5.64886 5.67034 5.85353 6.14912 6.16148 6.18612 6.25786 6.68950 7.49823 8.81025 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.007833 C = 0.007071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.800809 B = 3573.789922 C = 3958.984536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.120 4.120 5 C -0.144 4.144 6 C -0.080 4.080 7 C -0.129 4.129 8 C -0.133 4.133 9 C 0.077 3.923 10 N -0.505 5.505 11 C 0.030 3.970 12 C -0.106 4.106 13 C 0.021 3.979 14 H -0.012 1.012 15 C -0.597 4.597 16 H 0.039 0.961 17 C -0.030 4.030 18 N -0.937 5.937 19 Si 1.112 2.888 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.050 3.950 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.035 0.965 39 H 0.262 0.738 40 H 0.056 0.944 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.021 5.021 -15.936 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.086 4.086 3 C -0.159 4.159 4 C -0.138 4.138 5 C -0.162 4.162 6 C -0.081 4.081 7 C -0.185 4.185 8 C -0.135 4.135 9 C -0.050 4.050 10 N -0.227 5.227 11 C -0.098 4.098 12 C -0.145 4.145 13 C 0.002 3.998 14 H 0.006 0.994 15 C -0.635 4.635 16 H 0.057 0.943 17 C -0.228 4.228 18 N -0.575 5.575 19 Si 0.935 3.065 20 H -0.200 1.200 21 H -0.205 1.205 22 H -0.206 1.206 23 C -0.077 4.077 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.155 0.845 28 H 0.159 0.841 29 H 0.150 0.850 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.015 5.086 -14.489 15.390 hybrid contribution 0.126 -0.039 -1.010 1.019 sum 1.141 5.047 -15.499 16.340 Atomic orbital electron populations 1.21152 0.90176 1.03897 1.02579 1.20048 0.97064 0.92721 0.98785 1.21263 0.94700 0.97979 1.01956 1.21390 0.94594 0.98571 0.99253 1.21260 1.00497 0.92275 1.02168 1.20014 0.93507 0.96286 0.98287 1.21186 0.99988 0.94265 1.03086 1.20383 0.93985 0.96518 1.02604 1.21494 1.00340 0.92170 0.91023 1.65736 1.11223 1.44168 1.01598 1.23470 0.97615 0.95861 0.92818 1.22283 0.97761 0.98912 0.95538 1.19546 0.93229 0.93987 0.93048 0.99413 1.22303 1.10314 1.33042 0.97829 0.94282 1.27084 0.99540 0.98991 0.97211 1.70818 1.13753 1.32675 1.40235 0.82988 0.73898 0.74881 0.74723 1.20006 1.20461 1.20627 1.23278 0.91847 0.99794 0.92825 0.91208 0.89814 0.90454 0.84467 0.84130 0.85005 0.89520 0.91538 0.91079 0.89201 0.88315 0.89692 0.91827 0.94856 0.94649 0.92725 0.92558 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 8.23 71.24 0.59 -2.30 16 2 C -0.09 -2.46 4.85 -19.87 -0.10 -2.56 16 3 C -0.14 -3.83 9.73 22.27 0.22 -3.61 16 4 C -0.12 -3.21 10.05 22.27 0.22 -2.99 16 5 C -0.14 -4.13 9.70 22.27 0.22 -3.91 16 6 C -0.08 -2.45 4.45 -19.86 -0.09 -2.54 16 7 C -0.13 -3.52 8.42 71.24 0.60 -2.92 16 8 C -0.13 -4.10 3.94 -19.87 -0.08 -4.18 16 9 C 0.08 2.27 5.14 85.55 0.44 2.71 16 10 N -0.51 -18.65 5.65 -886.03 -5.01 -23.65 16 11 C 0.03 1.14 5.11 86.45 0.44 1.58 16 12 C -0.11 -5.15 5.03 31.49 0.16 -5.00 16 13 C 0.02 1.10 2.65 -10.65 -0.03 1.07 16 14 H -0.01 -0.71 8.04 -2.39 -0.02 -0.73 16 15 C -0.60 -34.30 8.37 25.60 0.21 -34.09 16 16 H 0.04 2.26 7.58 -2.91 -0.02 2.24 16 17 C -0.03 -1.73 5.09 84.65 0.43 -1.30 16 18 N -0.94 -57.90 13.27 21.45 0.28 -57.61 16 19 Si 1.11 51.64 29.90 68.60 2.05 53.69 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 C 0.05 2.14 4.18 86.45 0.36 2.50 16 24 H 0.07 1.81 6.26 -2.39 -0.01 1.79 16 25 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 26 H 0.08 1.69 5.68 -2.39 -0.01 1.67 16 27 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 29 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16 32 H 0.07 2.14 3.63 -2.39 -0.01 2.13 16 33 H 0.09 2.44 6.70 -2.38 -0.02 2.42 16 34 H 0.10 2.51 5.88 -2.39 -0.01 2.49 16 35 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.06 2.39 3.42 -2.39 -0.01 2.38 16 37 H 0.03 1.61 7.92 -2.39 -0.02 1.59 16 38 H 0.03 1.90 7.23 -2.38 -0.02 1.88 16 39 H 0.26 16.34 6.00 -92.70 -0.56 15.78 16 40 H 0.06 2.48 3.97 -2.39 -0.01 2.47 16 41 H 0.06 2.62 6.99 -2.39 -0.02 2.60 16 Total: -1.00 -66.31 301.06 2.17 -64.14 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 1.24 Total: 20.95 kcal Atomic # 6 Polarization: -61.12 SS G_CDS: 3.60 Total: -57.52 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -4.72 Total: -81.27 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.69 kcal Total: -66.31 2.17 -64.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397585907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.228 kcal (2) G-P(sol) polarization free energy of solvation -66.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds