Wall clock time and date at job start Mon Mar 30 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38238 * 120.00047 * 2 1 4 4 C 1.38227 * 120.00381 * 179.97438 * 3 2 1 5 5 C 1.38239 * 119.99669 * 0.27751 * 4 3 2 6 6 C 1.38228 * 120.00009 * 359.50798 * 5 4 3 7 7 C 1.50704 * 119.99867 * 180.25508 * 6 5 4 8 8 C 1.38231 * 120.00199 * 0.47244 * 6 5 4 9 9 C 1.50698 * 120.00567 * 179.78551 * 8 6 5 10 10 N 1.46899 * 109.47262 * 278.19706 * 9 8 6 11 11 C 1.47841 * 111.00189 * 284.33699 * 10 9 8 12 12 C 1.54896 * 104.79960 * 213.63459 * 11 10 9 13 13 C 1.55142 * 101.65266 * 37.06806 * 12 11 10 14 14 H 1.08996 * 110.70522 * 82.72860 * 13 12 11 15 15 C 1.50700 * 110.85922 * 205.89498 * 13 12 11 16 16 H 1.07994 * 120.00509 * 113.68174 * 15 13 12 17 17 C 1.37878 * 119.99843 * 293.69067 * 15 13 12 18 18 N 1.31519 * 120.00431 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 120.00042 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47103 * 59.99753 * 19 17 15 21 21 H 1.48503 * 109.46951 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46904 * 299.99856 * 19 17 15 23 23 C 1.47444 * 111.00332 * 163.49125 * 10 9 8 24 24 H 1.09000 * 109.46894 * 95.67408 * 1 2 3 25 25 H 1.08997 * 109.47116 * 215.67431 * 1 2 3 26 26 H 1.08999 * 109.46986 * 335.67341 * 1 2 3 27 27 H 1.08003 * 119.99454 * 0.02562 * 3 2 1 28 28 H 1.07996 * 120.00742 * 180.02562 * 4 3 2 29 29 H 1.08007 * 119.99795 * 179.72626 * 5 4 3 30 30 H 1.09000 * 109.47288 * 270.20936 * 7 6 5 31 31 H 1.08988 * 109.47362 * 30.21576 * 7 6 5 32 32 H 1.09006 * 109.47073 * 150.21663 * 7 6 5 33 33 H 1.09004 * 109.46842 * 38.19711 * 9 8 6 34 34 H 1.09000 * 109.47621 * 158.19293 * 9 8 6 35 35 H 1.09002 * 110.37128 * 332.46911 * 11 10 9 36 36 H 1.09007 * 110.37229 * 94.80331 * 11 10 9 37 37 H 1.09004 * 110.99414 * 278.97943 * 12 11 10 38 38 H 1.09001 * 110.99467 * 155.15820 * 12 11 10 39 39 H 0.96996 * 120.00527 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.89018 * 242.66717 * 23 10 9 41 41 H 1.09000 * 109.88586 * 3.69248 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 -0.0047 6 6 3.5806 -1.1970 -0.0002 7 6 4.3342 -2.5021 -0.0002 8 6 2.1983 -1.1971 -0.0004 9 6 1.4447 -2.5022 -0.0004 10 7 1.3710 -3.0251 -1.3712 11 6 0.3734 -2.2810 -2.1692 12 6 -0.2256 -3.3335 -3.1348 13 6 -0.2692 -4.5961 -2.2342 14 1 -1.1611 -4.5918 -1.6077 15 6 -0.2110 -5.8511 -3.0664 16 1 0.6480 -6.5024 -3.0019 17 6 -1.2543 -6.1677 -3.9103 18 7 -2.3007 -5.3748 -3.9887 19 14 -1.1818 -7.7231 -4.9424 20 1 -1.0710 -8.9048 -4.0498 21 1 -2.4177 -7.8337 -5.7583 22 1 0.0006 -7.6674 -5.8391 23 6 1.0032 -4.4529 -1.3731 24 1 -0.3633 -0.1016 -1.0226 25 1 -0.3633 -0.8348 0.5993 26 1 -0.3633 0.9364 0.4233 27 1 1.6581 2.1325 0.0004 28 1 4.1205 2.1325 0.0010 29 1 5.3518 0.0001 -0.0088 30 1 4.5158 -2.8169 -1.0278 31 1 5.2864 -2.3718 0.5137 32 1 3.7450 -3.2618 0.5136 33 1 1.9625 -3.2206 0.6352 34 1 0.4367 -2.3398 0.3813 35 1 -0.4035 -1.8743 -1.5217 36 1 0.8568 -1.4819 -2.7313 37 1 0.4256 -3.4898 -3.9949 38 1 -1.2278 -3.0461 -3.4529 39 1 -3.0349 -5.5977 -4.5821 40 1 1.8114 -5.0435 -1.8045 41 1 0.8039 -4.7858 -0.3544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397585909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:54 Heat of formation + Delta-G solvation = 1.404909 kcal Electronic energy + Delta-G solvation = -19579.958860 eV Core-core repulsion = 16844.228205 eV Total energy + Delta-G solvation = -2735.730655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94608 -39.24038 -35.33746 -34.44092 -33.74460 -31.38814 -30.05642 -28.56247 -27.46723 -26.73324 -25.47696 -22.24750 -21.53404 -21.41727 -20.97111 -18.58067 -17.27769 -16.97526 -16.60633 -16.34613 -15.89978 -15.25148 -14.81432 -14.57986 -14.34720 -14.06078 -13.94929 -13.72460 -13.60193 -13.46402 -13.15146 -12.95547 -12.85714 -12.63143 -12.56310 -12.40454 -12.25923 -11.92387 -11.68873 -11.58291 -11.52880 -11.12886 -10.90392 -10.48591 -9.47574 -9.34835 -9.06351 -8.13880 -6.23302 0.51717 0.56117 1.42051 1.43440 1.50928 2.43169 2.82706 3.17663 3.35932 3.86486 3.95060 4.11185 4.15159 4.18399 4.23173 4.41017 4.47250 4.51125 4.55118 4.62923 4.66911 4.78137 4.83701 4.88642 4.90435 4.97558 5.01639 5.04547 5.10464 5.27454 5.34714 5.35253 5.45646 5.57830 5.66331 5.69808 5.74503 5.86933 5.89481 6.18512 6.22799 6.32204 6.36615 6.85263 7.44113 8.95557 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035131 B = 0.004768 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.826484 B = 5870.993295 C = 6340.935179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.138 4.138 6 C -0.075 4.075 7 C -0.107 4.107 8 C -0.090 4.090 9 C 0.085 3.915 10 N -0.521 5.521 11 C 0.053 3.947 12 C -0.099 4.099 13 C 0.028 3.972 14 H 0.000 1.000 15 C -0.530 4.530 16 H 0.056 0.944 17 C 0.014 3.986 18 N -0.920 5.920 19 Si 0.955 3.045 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.060 3.940 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.261 0.739 40 H 0.062 0.938 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.176 12.005 9.289 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.089 4.089 3 C -0.155 4.155 4 C -0.137 4.137 5 C -0.156 4.156 6 C -0.076 4.076 7 C -0.163 4.163 8 C -0.091 4.091 9 C -0.042 4.042 10 N -0.245 5.245 11 C -0.074 4.074 12 C -0.137 4.137 13 C 0.009 3.991 14 H 0.018 0.982 15 C -0.568 4.568 16 H 0.074 0.926 17 C -0.185 4.185 18 N -0.560 5.560 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.068 4.068 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.155 0.845 28 H 0.162 0.838 29 H 0.156 0.844 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.497 12.063 8.999 18.349 hybrid contribution -1.235 -1.031 -0.445 1.669 sum 9.262 11.033 8.554 16.754 Atomic orbital electron populations 1.21002 0.91211 1.03157 1.02304 1.19967 0.96375 0.92994 0.99514 1.21223 0.94830 0.97436 1.02050 1.21392 0.94237 0.98700 0.99333 1.21259 1.00614 0.91772 1.01959 1.19958 0.92996 0.96401 0.98206 1.20750 0.99580 0.93708 1.02305 1.19554 0.93674 0.93929 1.01921 1.21292 0.98380 0.94258 0.90273 1.63577 1.47088 1.02472 1.11371 1.23092 0.92704 0.96080 0.95514 1.22429 0.98196 0.95756 0.97366 1.19753 0.92188 0.93934 0.93206 0.98184 1.21409 1.03853 1.07563 1.23990 0.92608 1.25754 0.95005 0.99687 0.98059 1.70073 1.08143 1.38821 1.38917 0.85663 0.77365 0.80122 0.78826 1.19477 1.21049 1.19677 1.22784 0.97487 0.88278 0.98227 0.91506 0.91928 0.89905 0.84483 0.83791 0.84391 0.91710 0.90344 0.91986 0.89873 0.94008 0.93328 0.91664 0.94424 0.93635 0.93063 0.91937 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.24 71.24 0.59 -2.34 16 2 C -0.09 -2.32 5.78 -19.86 -0.11 -2.44 16 3 C -0.14 -3.10 9.68 22.27 0.22 -2.88 16 4 C -0.12 -2.46 10.05 22.27 0.22 -2.23 16 5 C -0.14 -3.10 9.70 22.27 0.22 -2.88 16 6 C -0.08 -1.98 5.88 -19.87 -0.12 -2.10 16 7 C -0.11 -2.56 9.60 71.24 0.68 -1.87 16 8 C -0.09 -2.61 5.11 -19.87 -0.10 -2.71 16 9 C 0.09 2.68 4.05 85.56 0.35 3.03 16 10 N -0.52 -19.53 5.11 -890.12 -4.54 -24.07 16 11 C 0.05 2.10 5.53 86.77 0.48 2.58 16 12 C -0.10 -4.77 5.95 31.98 0.19 -4.58 16 13 C 0.03 1.45 2.77 -10.36 -0.03 1.42 16 14 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 15 C -0.53 -29.50 8.48 25.60 0.22 -29.28 16 16 H 0.06 3.04 7.53 -2.91 -0.02 3.01 16 17 C 0.01 0.77 5.36 84.65 0.45 1.23 16 18 N -0.92 -53.93 12.49 21.45 0.27 -53.67 16 19 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C 0.06 2.52 6.42 86.64 0.56 3.08 16 24 H 0.07 1.76 6.34 -2.39 -0.02 1.74 16 25 H 0.06 1.58 6.16 -2.39 -0.01 1.57 16 26 H 0.08 1.60 8.05 -2.39 -0.02 1.58 16 27 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 28 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 32 H 0.06 1.53 6.09 -2.38 -0.01 1.51 16 33 H 0.08 2.46 6.01 -2.39 -0.01 2.45 16 34 H 0.04 1.33 5.30 -2.39 -0.01 1.32 16 35 H 0.05 1.80 5.15 -2.39 -0.01 1.79 16 36 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 37 H 0.04 1.91 8.05 -2.39 -0.02 1.89 16 38 H 0.04 2.36 7.76 -2.39 -0.02 2.34 16 39 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.06 2.72 7.63 -2.39 -0.02 2.70 16 41 H 0.04 1.74 7.45 -2.39 -0.02 1.72 16 Total: -1.00 -61.43 317.58 2.56 -58.86 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.00 Total: 14.91 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 3.81 Total: -41.98 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -4.28 Total: -77.73 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -61.43 2.56 -58.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397585909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.268 kcal (2) G-P(sol) polarization free energy of solvation -61.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds