Wall clock time and date at job start Mon Mar 30 2020 06:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47066 * 2 1 4 4 C 1.38235 * 120.00116 * 90.00435 * 3 2 1 5 5 C 1.38230 * 120.00538 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99778 * 359.95573 * 5 4 3 7 7 C 1.50698 * 119.99711 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.47407 * 90.00374 * 7 6 5 9 9 C 1.48559 * 111.00066 * 69.86567 * 8 7 6 10 10 C 1.54387 * 104.58955 * 159.04379 * 9 8 7 11 11 C 1.54259 * 105.06271 * 336.15098 * 10 9 8 12 12 H 1.08991 * 110.32625 * 119.00097 * 11 10 9 13 13 C 1.50701 * 110.32157 * 241.10373 * 11 10 9 14 14 H 1.08005 * 119.99834 * 118.53799 * 13 11 10 15 15 C 1.37878 * 120.00375 * 298.54694 * 13 11 10 16 16 N 1.31512 * 119.99477 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00285 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47125 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47045 * 119.99736 * 17 15 13 20 20 H 1.48498 * 109.47066 * 239.99964 * 17 15 13 21 21 C 1.48560 * 111.00239 * 185.29090 * 8 7 6 22 22 C 1.38231 * 120.00073 * 0.27279 * 6 5 4 23 23 C 1.38234 * 119.99677 * 359.52057 * 22 6 5 24 24 H 1.09009 * 109.47180 * 299.99725 * 1 2 3 25 25 H 1.08998 * 109.47601 * 59.99721 * 1 2 3 26 26 H 1.08998 * 109.47672 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46654 * 240.00574 * 2 1 3 28 28 H 1.08997 * 109.47100 * 120.00432 * 2 1 3 29 29 H 1.08002 * 119.99839 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.00613 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.47595 * 329.99456 * 7 6 5 32 32 H 1.09004 * 109.46561 * 209.99595 * 7 6 5 33 33 H 1.08999 * 110.40971 * 40.26912 * 9 8 7 34 34 H 1.08999 * 110.41180 * 277.82119 * 9 8 7 35 35 H 1.09000 * 110.32138 * 95.04641 * 10 9 8 36 36 H 1.09003 * 110.32046 * 217.14933 * 10 9 8 37 37 H 0.97001 * 119.99820 * 180.02562 * 16 15 13 38 38 H 1.09004 * 110.40940 * 82.17346 * 21 8 7 39 39 H 1.08995 * 110.40669 * 319.73353 * 21 8 7 40 40 H 1.07994 * 120.00111 * 179.72518 * 22 6 5 41 41 H 1.08007 * 120.00203 * 180.25225 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7240 3.3755 1.1972 6 6 2.9557 4.0267 0.0001 7 6 3.4592 5.4471 0.0002 8 7 4.9282 5.4461 0.0011 9 6 5.4611 4.9681 -1.3006 10 6 6.9034 5.5160 -1.3552 11 6 6.9037 6.7386 -0.4145 12 1 7.6094 6.5877 0.4023 13 6 7.2514 7.9886 -1.1811 14 1 6.5414 8.8003 -1.2411 15 6 8.4757 8.0961 -1.8060 16 7 9.3399 7.1074 -1.7334 17 14 8.9064 9.6452 -2.7567 18 1 7.7710 10.5999 -2.6879 19 1 10.1158 10.2701 -2.1633 20 1 9.1744 9.2970 -4.1752 21 6 5.4615 6.8267 0.1292 22 6 2.7208 3.3768 -1.1971 23 6 2.2636 2.0723 -1.1971 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0825 1.5634 2.1325 30 1 2.9037 3.8847 2.1325 31 1 3.0956 5.9615 0.8898 32 1 3.0968 5.9610 -0.8902 33 1 4.8704 5.3701 -2.1238 34 1 5.4668 3.8786 -1.3321 35 1 7.6076 4.7641 -0.9989 36 1 7.1554 5.8183 -2.3717 37 1 10.2015 7.1831 -2.1727 38 1 5.4675 7.1365 1.1742 39 1 4.8709 7.5194 -0.4703 40 1 2.8976 3.8871 -2.1323 41 1 2.0839 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397658534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:01 Heat of formation + Delta-G solvation = 9.756435 kcal Electronic energy + Delta-G solvation = -18862.765484 eV Core-core repulsion = 16127.396979 eV Total energy + Delta-G solvation = -2735.368506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.54637 -37.80373 -34.64640 -33.00504 -31.10289 -30.80385 -28.84364 -28.10346 -25.56079 -24.02007 -22.76157 -22.51737 -20.54151 -20.01054 -19.29262 -16.42993 -15.89696 -15.61208 -15.15704 -15.06533 -14.53786 -14.19268 -13.80745 -13.76331 -13.27785 -13.16790 -12.87443 -12.43989 -12.31005 -11.87717 -11.73314 -11.37299 -11.21325 -11.04718 -10.95795 -10.76206 -10.65463 -10.49265 -10.42361 -10.20873 -9.72075 -9.27465 -8.77188 -8.70571 -8.42104 -8.35984 -7.76227 -6.00657 -4.04627 1.46056 1.55616 3.29152 3.37381 3.40862 3.84568 4.43095 4.69726 4.78832 4.87861 5.05962 5.12070 5.14798 5.22691 5.32450 5.42036 5.48541 5.60076 5.71387 5.74037 5.81197 5.88553 5.95689 5.99869 6.11732 6.20218 6.23636 6.31426 6.41630 6.55375 6.58525 6.69658 6.82729 6.90504 7.13950 7.16024 7.22917 7.58129 7.70971 7.74698 7.91035 8.01836 8.47727 8.98677 9.59359 11.08501 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.049330 B = 0.003673 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.465607 B = 7621.362944 C = 7767.951012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.121 4.121 5 C -0.099 4.099 6 C -0.067 4.067 7 C 0.079 3.921 8 N -0.509 5.509 9 C 0.034 3.966 10 C -0.091 4.091 11 C 0.048 3.952 12 H 0.033 0.967 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.062 3.938 16 N -0.886 5.886 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.039 3.961 22 C -0.109 4.109 23 C -0.120 4.120 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.066 0.934 37 H 0.259 0.741 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.118 0.882 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.534 -11.223 2.853 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.139 4.139 5 C -0.117 4.117 6 C -0.068 4.068 7 C -0.049 4.049 8 N -0.233 5.233 9 C -0.094 4.094 10 C -0.130 4.130 11 C 0.029 3.971 12 H 0.051 0.949 13 C -0.554 4.554 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.524 5.524 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.088 4.088 22 C -0.128 4.128 23 C -0.138 4.138 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.136 0.864 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.195 -11.601 3.244 19.390 hybrid contribution 0.097 1.347 -1.280 1.861 sum -15.098 -10.254 1.965 18.356 Atomic orbital electron populations 1.21745 0.94991 1.01391 1.02170 1.20507 0.95942 0.93003 1.02610 1.19809 1.00086 0.96019 0.93318 1.20953 1.00711 0.94980 0.97236 1.20995 0.98423 0.94546 0.97759 1.19833 0.97581 0.96304 0.93040 1.21197 0.90558 0.92108 1.01017 1.65447 1.04535 1.21418 1.31921 1.23200 0.98130 0.98863 0.89167 1.22192 0.91292 0.97755 1.01754 1.19364 0.89519 0.93699 0.94490 0.94888 1.21242 1.00657 1.01222 1.32271 0.92700 1.24974 0.96372 0.96194 0.96466 1.70003 1.07503 1.31183 1.43755 0.86586 0.78372 0.83601 0.79739 1.19845 1.21014 1.21087 1.23308 0.98688 0.87218 0.99548 1.21061 0.99174 0.94809 0.97743 1.20931 1.00675 0.94870 0.97291 0.92626 0.92626 0.92651 0.91258 0.91247 0.86522 0.86108 0.90614 0.94298 0.95222 0.92137 0.93714 0.91562 0.93098 0.92115 0.94678 0.86414 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.78 16 2 C -0.08 -0.75 6.06 -27.89 -0.17 -0.92 16 3 C -0.09 -1.08 5.13 -104.63 -0.54 -1.62 16 4 C -0.12 -1.47 9.70 -39.59 -0.38 -1.85 16 5 C -0.10 -1.35 9.70 -39.58 -0.38 -1.73 16 6 C -0.07 -1.00 5.09 -104.62 -0.53 -1.53 16 7 C 0.08 1.28 4.97 -4.97 -0.02 1.26 16 8 N -0.51 -9.92 5.36 -231.41 -1.24 -11.16 16 9 C 0.03 0.69 5.48 -2.18 -0.01 0.68 16 10 C -0.09 -2.20 5.75 -25.35 -0.15 -2.34 16 11 C 0.05 1.23 2.99 -90.39 -0.27 0.96 16 12 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 13 C -0.52 -14.16 8.37 -34.44 -0.29 -14.45 16 14 H 0.05 1.49 7.58 -52.48 -0.40 1.09 16 15 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 16 N -0.89 -25.58 12.35 55.43 0.68 -24.89 16 17 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.04 0.85 6.01 -2.18 -0.01 0.83 16 22 C -0.11 -1.53 8.75 -39.59 -0.35 -1.87 16 23 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 24 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.08 1.13 8.07 -51.93 -0.42 0.71 16 32 H 0.04 0.63 7.82 -51.93 -0.41 0.22 16 33 H 0.03 0.58 7.82 -51.93 -0.41 0.18 16 34 H 0.06 1.17 7.83 -51.93 -0.41 0.76 16 35 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.73 7.24 -51.93 -0.38 1.35 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.03 0.75 7.56 -51.93 -0.39 0.36 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 330.77 15.07 4.98 4.98 Total: -1.00 -28.85 330.77 -10.81 -39.66 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.01 Total: -1.22 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -3.22 Total: -23.63 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.56 Total: -36.06 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.85 -10.81 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397658534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.421 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds