Wall clock time and date at job start Mon Mar 30 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47066 * 2 1 4 4 C 1.38235 * 120.00116 * 90.00435 * 3 2 1 5 5 C 1.38230 * 120.00538 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99778 * 359.95573 * 5 4 3 7 7 C 1.50698 * 119.99711 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.47407 * 90.00374 * 7 6 5 9 9 C 1.48559 * 111.00066 * 69.86567 * 8 7 6 10 10 C 1.54387 * 104.58955 * 159.04379 * 9 8 7 11 11 C 1.54259 * 105.06271 * 336.15098 * 10 9 8 12 12 H 1.08991 * 110.32625 * 119.00097 * 11 10 9 13 13 C 1.50701 * 110.32157 * 241.10373 * 11 10 9 14 14 H 1.08005 * 119.99834 * 118.53799 * 13 11 10 15 15 C 1.37878 * 120.00375 * 298.54694 * 13 11 10 16 16 N 1.31512 * 119.99477 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00285 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47125 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47045 * 119.99736 * 17 15 13 20 20 H 1.48498 * 109.47066 * 239.99964 * 17 15 13 21 21 C 1.48560 * 111.00239 * 185.29090 * 8 7 6 22 22 C 1.38231 * 120.00073 * 0.27279 * 6 5 4 23 23 C 1.38234 * 119.99677 * 359.52057 * 22 6 5 24 24 H 1.09009 * 109.47180 * 299.99725 * 1 2 3 25 25 H 1.08998 * 109.47601 * 59.99721 * 1 2 3 26 26 H 1.08998 * 109.47672 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46654 * 240.00574 * 2 1 3 28 28 H 1.08997 * 109.47100 * 120.00432 * 2 1 3 29 29 H 1.08002 * 119.99839 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.00613 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.47595 * 329.99456 * 7 6 5 32 32 H 1.09004 * 109.46561 * 209.99595 * 7 6 5 33 33 H 1.08999 * 110.40971 * 40.26912 * 9 8 7 34 34 H 1.08999 * 110.41180 * 277.82119 * 9 8 7 35 35 H 1.09000 * 110.32138 * 95.04641 * 10 9 8 36 36 H 1.09003 * 110.32046 * 217.14933 * 10 9 8 37 37 H 0.97001 * 119.99820 * 180.02562 * 16 15 13 38 38 H 1.09004 * 110.40940 * 82.17346 * 21 8 7 39 39 H 1.08995 * 110.40669 * 319.73353 * 21 8 7 40 40 H 1.07994 * 120.00111 * 179.72518 * 22 6 5 41 41 H 1.08007 * 120.00203 * 180.25225 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7240 3.3755 1.1972 6 6 2.9557 4.0267 0.0001 7 6 3.4592 5.4471 0.0002 8 7 4.9282 5.4461 0.0011 9 6 5.4611 4.9681 -1.3006 10 6 6.9034 5.5160 -1.3552 11 6 6.9037 6.7386 -0.4145 12 1 7.6094 6.5877 0.4023 13 6 7.2514 7.9886 -1.1811 14 1 6.5414 8.8003 -1.2411 15 6 8.4757 8.0961 -1.8060 16 7 9.3399 7.1074 -1.7334 17 14 8.9064 9.6452 -2.7567 18 1 7.7710 10.5999 -2.6879 19 1 10.1158 10.2701 -2.1633 20 1 9.1744 9.2970 -4.1752 21 6 5.4615 6.8267 0.1292 22 6 2.7208 3.3768 -1.1971 23 6 2.2636 2.0723 -1.1971 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0825 1.5634 2.1325 30 1 2.9037 3.8847 2.1325 31 1 3.0956 5.9615 0.8898 32 1 3.0968 5.9610 -0.8902 33 1 4.8704 5.3701 -2.1238 34 1 5.4668 3.8786 -1.3321 35 1 7.6076 4.7641 -0.9989 36 1 7.1554 5.8183 -2.3717 37 1 10.2015 7.1831 -2.1727 38 1 5.4675 7.1365 1.1742 39 1 4.8709 7.5194 -0.4703 40 1 2.8976 3.8871 -2.1323 41 1 2.0839 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397658534.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:00 Heat of formation + Delta-G solvation = -5.108119 kcal Electronic energy + Delta-G solvation = -18863.410060 eV Core-core repulsion = 16127.396979 eV Total energy + Delta-G solvation = -2736.013081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.64518 -39.35216 -35.84448 -34.68446 -32.60318 -31.78390 -30.13475 -29.92627 -26.99890 -25.72406 -23.78394 -23.51253 -21.85497 -21.39142 -21.12170 -18.38264 -17.07795 -16.87703 -16.61538 -16.37225 -16.08260 -15.79960 -14.88976 -14.64306 -14.46023 -14.32361 -14.14345 -13.93254 -13.76821 -13.19037 -12.99082 -12.90934 -12.68664 -12.50564 -12.33528 -12.25029 -12.10763 -11.92000 -11.70358 -11.59694 -11.57979 -11.17416 -10.79361 -10.49851 -9.75501 -9.51754 -9.24215 -8.13907 -6.25219 0.45569 0.57042 1.39679 1.41337 1.52811 2.41692 2.80741 3.16907 3.39725 3.81569 3.93413 4.01340 4.12328 4.19328 4.21052 4.35525 4.49417 4.52538 4.55379 4.61821 4.63338 4.70645 4.79114 4.81213 4.84429 5.03341 5.10023 5.12027 5.20416 5.23396 5.28435 5.31864 5.41993 5.56051 5.60369 5.71912 5.77581 5.81712 5.86072 5.97058 6.16710 6.24659 6.39776 6.85973 7.42671 8.95311 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.049330 B = 0.003673 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.465607 B = 7621.362944 C = 7767.951012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.091 4.091 4 C -0.125 4.125 5 C -0.109 4.109 6 C -0.088 4.088 7 C 0.083 3.917 8 N -0.513 5.513 9 C 0.051 3.949 10 C -0.084 4.084 11 C 0.039 3.961 12 H -0.002 1.002 13 C -0.532 4.532 14 H 0.055 0.945 15 C 0.011 3.989 16 N -0.918 5.918 17 Si 0.956 3.044 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.051 3.949 22 C -0.121 4.121 23 C -0.126 4.126 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.026 0.974 36 H 0.040 0.960 37 H 0.261 0.739 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.117 0.883 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.240 -11.944 2.809 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.143 4.143 5 C -0.127 4.127 6 C -0.089 4.089 7 C -0.045 4.045 8 N -0.236 5.236 9 C -0.077 4.077 10 C -0.123 4.123 11 C 0.020 3.980 12 H 0.016 0.984 13 C -0.570 4.570 14 H 0.073 0.927 15 C -0.188 4.188 16 N -0.557 5.557 17 Si 0.782 3.218 18 H -0.190 1.190 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.076 4.076 22 C -0.140 4.140 23 C -0.144 4.144 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.156 0.844 30 H 0.145 0.855 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.135 0.865 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.921 -12.323 3.206 21.177 hybrid contribution 0.602 1.493 -1.227 2.024 sum -16.318 -10.831 1.980 19.685 Atomic orbital electron populations 1.21725 0.94039 1.02392 1.01885 1.20573 0.96661 0.91257 1.03514 1.20187 0.98749 0.97262 0.92883 1.21245 1.00040 0.94526 0.98481 1.21165 0.98602 0.95331 0.97604 1.19767 0.99371 0.95771 0.93967 1.21219 0.87956 0.93635 1.01664 1.65412 1.07114 1.19850 1.31256 1.22990 0.95422 0.99303 0.90011 1.21984 0.93650 0.96967 0.99670 1.19336 0.91316 0.93703 0.93606 0.98402 1.21556 1.00978 1.01934 1.32541 0.92679 1.25781 0.96299 0.99272 0.97400 1.70128 1.07858 1.33097 1.44607 0.85531 0.78203 0.79827 0.78253 1.18981 1.20619 1.20632 1.23076 0.96163 0.88543 0.99820 1.21167 0.99734 0.95624 0.97465 1.21194 1.00248 0.94418 0.98547 0.92825 0.93023 0.91050 0.90500 0.90267 0.84373 0.85543 0.89351 0.94199 0.94509 0.91022 0.95473 0.94164 0.93030 0.91127 0.94632 0.86522 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.89 71.98 0.71 -1.14 16 2 C -0.08 -1.25 6.06 29.85 0.18 -1.07 16 3 C -0.09 -1.91 5.13 -19.87 -0.10 -2.01 16 4 C -0.13 -2.76 9.70 22.27 0.22 -2.54 16 5 C -0.11 -2.79 9.70 22.27 0.22 -2.57 16 6 C -0.09 -2.51 5.09 -19.87 -0.10 -2.61 16 7 C 0.08 2.58 4.97 85.56 0.42 3.00 16 8 N -0.51 -19.66 5.36 -886.03 -4.75 -24.41 16 9 C 0.05 2.03 5.48 86.45 0.47 2.51 16 10 C -0.08 -4.16 5.75 31.49 0.18 -3.98 16 11 C 0.04 2.06 2.99 -10.65 -0.03 2.03 16 12 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 13 C -0.53 -29.69 8.37 25.60 0.21 -29.48 16 14 H 0.05 3.00 7.58 -2.91 -0.02 2.98 16 15 C 0.01 0.64 5.09 84.66 0.43 1.07 16 16 N -0.92 -54.25 12.35 21.45 0.26 -53.99 16 17 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 C 0.05 2.20 6.01 86.45 0.52 2.72 16 22 C -0.12 -3.23 8.75 22.27 0.19 -3.04 16 23 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 24 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 1.06 8.08 -2.39 -0.02 1.05 16 28 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 29 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.09 2.50 8.07 -2.39 -0.02 2.48 16 32 H 0.04 1.23 7.82 -2.38 -0.02 1.21 16 33 H 0.04 1.42 7.82 -2.39 -0.02 1.41 16 34 H 0.07 2.73 7.83 -2.39 -0.02 2.71 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 2.16 7.24 -2.39 -0.02 2.14 16 37 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.04 1.51 7.56 -2.39 -0.02 1.49 16 40 H 0.12 3.04 8.06 -2.91 -0.02 3.01 16 41 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -62.09 330.77 2.26 -59.84 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.97 Total: 12.40 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.75 Total: -39.80 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -4.48 Total: -78.39 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -62.09 2.26 -59.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397658534.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.730 kcal (2) G-P(sol) polarization free energy of solvation -62.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds