Wall clock time and date at job start Mon Mar 30 2020 06:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 115.56197 * 2 1 4 4 C 1.53076 * 117.50700 * 214.30039 * 2 1 3 5 5 C 1.52996 * 117.49614 * 145.69414 * 2 1 3 6 6 H 1.08995 * 117.50360 * 359.97438 * 5 2 1 7 7 C 1.53004 * 117.49750 * 214.99628 * 5 2 1 8 8 N 1.46895 * 109.47569 * 175.08683 * 7 5 2 9 9 C 1.46893 * 111.00149 * 179.97438 * 8 7 5 10 10 C 1.50704 * 109.46918 * 180.02562 * 9 8 7 11 11 C 1.38637 * 119.74893 * 269.72745 * 10 9 8 12 12 C 1.37613 * 120.24816 * 179.72578 * 11 10 9 13 13 C 1.40714 * 119.74548 * 0.56673 * 12 11 10 14 14 C 1.41392 * 120.24769 * 179.68234 * 13 12 11 15 15 H 1.08007 * 119.99736 * 24.41325 * 14 13 12 16 16 C 1.39945 * 120.00217 * 204.40572 * 14 13 12 17 17 N 1.30819 * 120.00138 * 17.87109 * 16 14 13 18 18 Si 1.86801 * 120.00049 * 197.86809 * 16 14 13 19 19 H 1.48499 * 109.47140 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47455 * 120.00068 * 18 16 14 21 21 H 1.48506 * 109.47450 * 240.00272 * 18 16 14 22 22 C 1.40719 * 119.51296 * 359.70799 * 13 12 11 23 23 C 1.37623 * 119.74264 * 0.02562 * 22 13 12 24 24 H 1.09005 * 109.46421 * 274.30828 * 1 2 3 25 25 H 1.08995 * 109.46911 * 34.30754 * 1 2 3 26 26 H 1.09001 * 109.47319 * 154.31109 * 1 2 3 27 27 H 1.09008 * 109.47276 * 205.69373 * 3 2 1 28 28 H 1.09007 * 109.47321 * 325.69042 * 3 2 1 29 29 H 1.09005 * 109.47229 * 85.69171 * 3 2 1 30 30 H 1.09002 * 117.48949 * 145.03880 * 4 2 1 31 31 H 1.08994 * 117.51744 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.46940 * 295.09443 * 7 5 2 33 33 H 1.09003 * 109.46796 * 55.08308 * 7 5 2 34 34 H 1.00900 * 110.99729 * 56.04657 * 8 7 5 35 35 H 1.09000 * 109.47375 * 300.00130 * 9 8 7 36 36 H 1.08997 * 109.47314 * 60.00093 * 9 8 7 37 37 H 1.08000 * 119.87769 * 359.97438 * 11 10 9 38 38 H 1.07999 * 120.13003 * 180.28043 * 12 11 10 39 39 H 0.96999 * 120.00477 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.13072 * 179.97438 * 22 13 12 41 41 H 1.07994 * 119.87918 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2371 -1.1216 -0.7651 5 6 2.2364 -1.1211 0.7649 6 1 1.6112 -1.8583 1.2685 7 6 3.5488 -0.7760 1.4717 8 7 4.0107 -1.9385 2.2419 9 6 5.2717 -1.6434 2.9351 10 6 5.7135 -2.8568 3.7121 11 6 5.3025 -3.0193 5.0262 12 6 5.6952 -4.1262 5.7434 13 6 6.5268 -5.0889 5.1420 14 6 6.9422 -6.2267 5.8714 15 1 6.3521 -6.5790 6.7046 16 6 8.1177 -6.8965 5.5135 17 7 9.0060 -6.3015 4.7597 18 14 8.4183 -8.6403 6.1122 19 1 7.2699 -9.0834 6.9428 20 1 8.5630 -9.5465 4.9448 21 1 9.6609 -8.6775 6.9247 22 6 6.9425 -4.9106 3.8095 23 6 6.5330 -3.7987 3.1095 24 1 -0.3632 0.0772 1.0248 25 1 -0.3633 0.8488 -0.5792 26 1 -0.3634 -0.9261 -0.4455 27 1 3.1825 1.3084 -0.4456 28 1 1.5812 2.0743 -0.5793 29 1 2.2773 1.7413 1.0248 30 1 3.1723 -0.8757 -1.2681 31 1 1.6123 -1.8596 -1.2680 32 1 4.3016 -0.5090 0.7301 33 1 3.3881 0.0657 2.1455 34 1 4.1052 -2.7500 1.6498 35 1 6.0363 -1.3828 2.2033 36 1 5.1234 -0.8077 3.6190 37 1 4.6685 -2.2766 5.4874 38 1 5.3702 -4.2531 6.7655 39 1 9.8209 -6.7656 4.5120 40 1 7.5811 -5.6430 3.3382 41 1 6.8510 -3.6595 2.0869 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398989639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:50 Heat of formation + Delta-G solvation = 22.172487 kcal Electronic energy + Delta-G solvation = -18242.484268 eV Core-core repulsion = 15507.654163 eV Total energy + Delta-G solvation = -2734.830105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.92036 -37.67088 -35.24255 -33.48601 -30.59607 -29.32578 -29.13271 -27.84282 -26.84488 -24.70792 -22.69379 -21.02338 -20.91192 -19.84864 -18.69345 -17.26584 -16.01508 -15.28136 -14.93773 -14.54815 -14.29391 -14.05164 -13.78347 -13.42581 -13.36766 -13.02199 -12.58265 -12.43481 -12.16257 -12.06274 -11.90378 -11.70406 -11.44836 -11.40392 -11.13554 -10.98248 -10.87123 -10.50681 -10.36423 -9.86791 -9.65634 -9.47388 -9.36047 -9.10610 -8.02338 -7.41622 -7.26592 -6.74649 -4.32453 2.75142 3.07927 3.11850 3.13690 3.19162 3.61371 3.94502 4.35791 4.62487 4.65430 4.74767 4.91609 5.10803 5.37984 5.45858 5.47445 5.66306 5.70245 5.72688 5.75336 5.76616 5.79880 5.87902 5.91043 5.98980 6.03793 6.16175 6.29947 6.34742 6.41674 6.45525 6.97520 7.09913 7.30830 7.40947 7.45978 7.64827 7.79165 7.92970 8.08691 8.17846 8.33481 8.67010 8.92406 9.00950 10.19988 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.044259 B = 0.003146 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.491812 B = 8898.214213 C = 8954.682408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.130 4.130 3 C -0.114 4.114 4 C -0.177 4.177 5 C -0.137 4.137 6 H 0.112 0.888 7 C 0.090 3.910 8 N -0.683 5.683 9 C 0.125 3.875 10 C -0.213 4.213 11 C -0.069 4.069 12 C -0.228 4.228 13 C 0.112 3.888 14 C -0.462 4.462 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.906 3.094 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.275 1.275 22 C -0.166 4.166 23 C -0.095 4.095 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.341 0.659 35 H 0.018 0.982 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.279 0.721 40 H 0.117 0.883 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.462 9.094 -8.863 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.131 4.131 3 C -0.171 4.171 4 C -0.214 4.214 5 C -0.155 4.155 6 H 0.130 0.870 7 C -0.040 4.040 8 N -0.314 5.314 9 C -0.003 4.003 10 C -0.215 4.215 11 C -0.088 4.088 12 C -0.248 4.248 13 C 0.109 3.891 14 C -0.492 4.492 15 H 0.096 0.904 16 C -0.142 4.142 17 N -0.419 5.419 18 Si 0.731 3.269 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.200 1.200 22 C -0.186 4.186 23 C -0.114 4.114 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.159 0.841 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.605 9.223 -8.411 15.750 hybrid contribution 0.945 -0.837 -0.535 1.371 sum -8.660 8.386 -8.945 15.011 Atomic orbital electron populations 1.21337 0.92170 1.01679 1.01856 1.21585 0.94644 0.91470 1.05363 1.21326 0.99855 0.94107 1.01859 1.23341 1.02213 1.01115 0.94690 1.22521 0.98979 1.01090 0.92938 0.87021 1.21471 0.93067 0.94394 0.95042 1.60623 1.32382 1.05537 1.32888 1.20541 0.87949 0.96523 0.95294 1.18894 1.07846 0.99155 0.95601 1.20332 0.97973 0.96742 0.93706 1.20972 1.08380 0.96727 0.98699 1.17632 0.89121 0.90983 0.91344 1.19629 1.06198 1.09527 1.13862 0.90449 1.25912 0.95198 0.99385 0.93685 1.69837 1.06609 1.36733 1.28765 0.86295 0.79061 0.82168 0.79389 1.18391 1.19738 1.20033 1.21274 1.04233 0.98384 0.94660 1.20521 0.98190 0.95353 0.97346 0.92175 0.92387 0.92559 0.92552 0.92416 0.92129 0.89137 0.89034 0.95875 0.91174 0.84146 0.96393 0.92108 0.89482 0.89110 0.90998 0.86561 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.85 37.16 0.37 -0.62 16 2 C -0.13 -1.30 2.70 -154.47 -0.42 -1.71 16 3 C -0.11 -1.03 8.86 37.15 0.33 -0.70 16 4 C -0.18 -1.83 9.47 -26.69 -0.25 -2.08 16 5 C -0.14 -1.61 5.67 -90.62 -0.51 -2.12 16 6 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 7 C 0.09 1.19 5.05 -3.82 -0.02 1.17 16 8 N -0.68 -11.10 6.49 -115.06 -0.75 -11.85 16 9 C 0.12 2.25 5.80 -4.98 -0.03 2.22 16 10 C -0.21 -4.69 5.41 -104.33 -0.56 -5.25 16 11 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 12 C -0.23 -5.72 9.80 -38.88 -0.38 -6.10 16 13 C 0.11 3.02 5.58 -106.83 -0.60 2.43 16 14 C -0.46 -12.43 9.05 -37.74 -0.34 -12.78 16 15 H 0.08 2.01 7.91 -52.48 -0.42 1.60 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.79 -20.70 10.95 55.55 0.61 -20.09 16 18 Si 0.91 18.80 29.60 -169.99 -5.03 13.77 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 23 C -0.10 -2.23 9.67 -39.66 -0.38 -2.61 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 26 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 27 H 0.06 0.51 7.90 -51.92 -0.41 0.10 16 28 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 29 H 0.06 0.55 7.84 -51.93 -0.41 0.14 16 30 H 0.09 0.92 7.94 -51.93 -0.41 0.51 16 31 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 32 H 0.02 0.30 7.88 -51.93 -0.41 -0.11 16 33 H 0.07 0.93 7.77 -51.93 -0.40 0.52 16 34 H 0.34 5.60 8.72 -39.29 -0.34 5.26 16 35 H 0.02 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 39 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 40 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 41 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -27.04 337.59 -10.56 -37.60 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.86 Total: 8.48 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: -3.61 Total: -33.00 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: -0.14 Total: -31.94 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.04 -10.56 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398989639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.774 kcal (2) G-P(sol) polarization free energy of solvation -27.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds