Wall clock time and date at job start Mon Mar 30 2020 06:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 115.56197 * 2 1 4 4 C 1.53076 * 117.50700 * 214.30039 * 2 1 3 5 5 C 1.52996 * 117.49614 * 145.69414 * 2 1 3 6 6 H 1.08995 * 117.50360 * 359.97438 * 5 2 1 7 7 C 1.53004 * 117.49750 * 214.99628 * 5 2 1 8 8 N 1.46895 * 109.47569 * 175.08683 * 7 5 2 9 9 C 1.46893 * 111.00149 * 179.97438 * 8 7 5 10 10 C 1.50704 * 109.46918 * 180.02562 * 9 8 7 11 11 C 1.38637 * 119.74893 * 269.72745 * 10 9 8 12 12 C 1.37613 * 120.24816 * 179.72578 * 11 10 9 13 13 C 1.40714 * 119.74548 * 0.56673 * 12 11 10 14 14 C 1.41392 * 120.24769 * 179.68234 * 13 12 11 15 15 H 1.08007 * 119.99736 * 24.41325 * 14 13 12 16 16 C 1.39945 * 120.00217 * 204.40572 * 14 13 12 17 17 N 1.30819 * 120.00138 * 17.87109 * 16 14 13 18 18 Si 1.86801 * 120.00049 * 197.86809 * 16 14 13 19 19 H 1.48499 * 109.47140 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47455 * 120.00068 * 18 16 14 21 21 H 1.48506 * 109.47450 * 240.00272 * 18 16 14 22 22 C 1.40719 * 119.51296 * 359.70799 * 13 12 11 23 23 C 1.37623 * 119.74264 * 0.02562 * 22 13 12 24 24 H 1.09005 * 109.46421 * 274.30828 * 1 2 3 25 25 H 1.08995 * 109.46911 * 34.30754 * 1 2 3 26 26 H 1.09001 * 109.47319 * 154.31109 * 1 2 3 27 27 H 1.09008 * 109.47276 * 205.69373 * 3 2 1 28 28 H 1.09007 * 109.47321 * 325.69042 * 3 2 1 29 29 H 1.09005 * 109.47229 * 85.69171 * 3 2 1 30 30 H 1.09002 * 117.48949 * 145.03880 * 4 2 1 31 31 H 1.08994 * 117.51744 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.46940 * 295.09443 * 7 5 2 33 33 H 1.09003 * 109.46796 * 55.08308 * 7 5 2 34 34 H 1.00900 * 110.99729 * 56.04657 * 8 7 5 35 35 H 1.09000 * 109.47375 * 300.00130 * 9 8 7 36 36 H 1.08997 * 109.47314 * 60.00093 * 9 8 7 37 37 H 1.08000 * 119.87769 * 359.97438 * 11 10 9 38 38 H 1.07999 * 120.13003 * 180.28043 * 12 11 10 39 39 H 0.96999 * 120.00477 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.13072 * 179.97438 * 22 13 12 41 41 H 1.07994 * 119.87918 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2371 -1.1216 -0.7651 5 6 2.2364 -1.1211 0.7649 6 1 1.6112 -1.8583 1.2685 7 6 3.5488 -0.7760 1.4717 8 7 4.0107 -1.9385 2.2419 9 6 5.2717 -1.6434 2.9351 10 6 5.7135 -2.8568 3.7121 11 6 5.3025 -3.0193 5.0262 12 6 5.6952 -4.1262 5.7434 13 6 6.5268 -5.0889 5.1420 14 6 6.9422 -6.2267 5.8714 15 1 6.3521 -6.5790 6.7046 16 6 8.1177 -6.8965 5.5135 17 7 9.0060 -6.3015 4.7597 18 14 8.4183 -8.6403 6.1122 19 1 7.2699 -9.0834 6.9428 20 1 8.5630 -9.5465 4.9448 21 1 9.6609 -8.6775 6.9247 22 6 6.9425 -4.9106 3.8095 23 6 6.5330 -3.7987 3.1095 24 1 -0.3632 0.0772 1.0248 25 1 -0.3633 0.8488 -0.5792 26 1 -0.3634 -0.9261 -0.4455 27 1 3.1825 1.3084 -0.4456 28 1 1.5812 2.0743 -0.5793 29 1 2.2773 1.7413 1.0248 30 1 3.1723 -0.8757 -1.2681 31 1 1.6123 -1.8596 -1.2680 32 1 4.3016 -0.5090 0.7301 33 1 3.3881 0.0657 2.1455 34 1 4.1052 -2.7500 1.6498 35 1 6.0363 -1.3828 2.2033 36 1 5.1234 -0.8077 3.6190 37 1 4.6685 -2.2766 5.4874 38 1 5.3702 -4.2531 6.7655 39 1 9.8209 -6.7656 4.5120 40 1 7.5811 -5.6430 3.3382 41 1 6.8510 -3.6595 2.0869 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398989639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:50 Heat of formation + Delta-G solvation = 9.201959 kcal Electronic energy + Delta-G solvation = -18243.046712 eV Core-core repulsion = 15507.654163 eV Total energy + Delta-G solvation = -2735.392550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.88970 -39.39940 -36.69983 -35.24977 -32.20607 -31.14293 -30.27608 -28.70686 -28.19811 -26.15737 -24.20888 -22.87738 -21.92792 -21.57676 -19.55633 -19.21118 -17.37719 -16.91227 -16.11239 -15.99299 -15.63793 -15.45550 -15.04927 -14.82540 -14.42085 -14.37458 -13.97027 -13.78394 -13.49642 -13.28438 -13.05599 -12.90691 -12.88459 -12.73310 -12.64635 -12.34846 -12.23177 -12.04285 -11.85404 -11.38311 -11.25910 -11.00159 -10.71845 -10.40880 -9.41668 -9.27719 -9.14049 -8.63595 -6.32462 0.94488 1.16926 1.37884 1.49618 1.53462 2.21120 2.67772 2.79493 3.34788 3.77853 3.84270 3.88742 4.05134 4.21757 4.30508 4.34436 4.45413 4.56813 4.60015 4.69860 4.78513 4.82712 4.84876 4.88602 4.95425 5.05565 5.06648 5.08490 5.12243 5.17382 5.29972 5.33595 5.38751 5.48881 5.50008 5.72467 5.96320 6.11641 6.20559 6.26676 6.40913 6.52589 6.71693 6.95473 7.05438 8.33726 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.044259 B = 0.003146 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.491812 B = 8898.214213 C = 8954.682408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.121 4.121 3 C -0.116 4.116 4 C -0.173 4.173 5 C -0.153 4.153 6 H 0.099 0.901 7 C 0.096 3.904 8 N -0.691 5.691 9 C 0.132 3.868 10 C -0.201 4.201 11 C -0.073 4.073 12 C -0.245 4.245 13 C 0.079 3.921 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.826 5.826 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.265 1.265 22 C -0.190 4.190 23 C -0.098 4.098 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.339 0.661 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.288 0.712 40 H 0.099 0.901 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.248 10.063 -9.818 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.122 4.122 3 C -0.173 4.173 4 C -0.210 4.210 5 C -0.171 4.171 6 H 0.117 0.883 7 C -0.033 4.033 8 N -0.322 5.322 9 C 0.004 3.996 10 C -0.203 4.203 11 C -0.092 4.092 12 C -0.264 4.264 13 C 0.076 3.924 14 C -0.531 4.531 15 H 0.091 0.909 16 C -0.180 4.180 17 N -0.452 5.452 18 Si 0.803 3.197 19 H -0.183 1.183 20 H -0.188 1.188 21 H -0.190 1.190 22 C -0.209 4.209 23 C -0.117 4.117 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.156 0.844 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.404 10.216 -9.373 17.334 hybrid contribution 1.115 -0.989 -0.304 1.521 sum -9.289 9.227 -9.677 16.281 Atomic orbital electron populations 1.21369 0.91226 1.02451 1.02080 1.21730 0.95398 0.91509 1.03560 1.21361 1.00053 0.93757 1.02088 1.23392 1.02560 1.01498 0.93561 1.22389 0.98571 1.02433 0.93728 0.88311 1.21450 0.93777 0.93095 0.94931 1.60544 1.31157 1.06689 1.33775 1.20443 0.89057 0.94639 0.95499 1.19330 1.05800 0.99636 0.95486 1.20642 0.97890 0.96473 0.94152 1.21173 1.08643 0.97368 0.99250 1.17979 0.90344 0.91976 0.92074 1.19851 1.07495 1.10983 1.14819 0.90901 1.26759 0.94301 1.03323 0.93618 1.69882 1.07177 1.38468 1.29712 0.85166 0.79043 0.76479 0.79041 1.18281 1.18828 1.18961 1.21250 1.05292 0.99483 0.94895 1.20771 0.97966 0.94710 0.98219 0.92336 0.90964 0.92393 0.92615 0.90973 0.92234 0.88890 0.88430 0.95253 0.91015 0.84372 0.95432 0.91019 0.87012 0.88770 0.90183 0.88261 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.85 71.98 0.71 -1.02 16 2 C -0.12 -2.15 2.70 -52.16 -0.14 -2.29 16 3 C -0.12 -1.79 8.86 71.98 0.64 -1.15 16 4 C -0.17 -3.23 9.47 30.62 0.29 -2.94 16 5 C -0.15 -3.34 5.67 -10.79 -0.06 -3.40 16 6 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 7 C 0.10 2.35 5.05 86.31 0.44 2.78 16 8 N -0.69 -21.15 6.49 -517.94 -3.36 -24.51 16 9 C 0.13 4.45 5.80 85.56 0.50 4.94 16 10 C -0.20 -8.60 5.41 -19.67 -0.11 -8.71 16 11 C -0.07 -3.30 9.67 22.22 0.21 -3.08 16 12 C -0.24 -12.49 9.80 22.73 0.22 -12.27 16 13 C 0.08 4.39 5.58 -21.29 -0.12 4.27 16 14 C -0.50 -27.96 9.05 23.46 0.21 -27.75 16 15 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 16 C 0.03 1.78 5.14 85.26 0.44 2.22 16 17 N -0.83 -44.12 10.95 21.83 0.24 -43.88 16 18 Si 0.98 39.03 29.60 68.60 2.03 41.06 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 C -0.19 -10.22 8.70 22.73 0.20 -10.02 16 23 C -0.10 -4.57 9.67 22.22 0.21 -4.35 16 24 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.07 0.89 7.92 -2.39 -0.02 0.87 16 26 H 0.06 0.85 7.90 -2.39 -0.02 0.83 16 27 H 0.05 0.87 7.90 -2.38 -0.02 0.85 16 28 H 0.07 0.91 7.92 -2.38 -0.02 0.89 16 29 H 0.06 0.94 7.84 -2.38 -0.02 0.92 16 30 H 0.09 1.69 7.94 -2.39 -0.02 1.67 16 31 H 0.10 1.69 8.05 -2.39 -0.02 1.67 16 32 H 0.03 0.69 7.88 -2.39 -0.02 0.67 16 33 H 0.07 1.73 7.77 -2.39 -0.02 1.71 16 34 H 0.34 10.63 8.72 -89.69 -0.78 9.85 16 35 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 36 H 0.07 2.29 8.08 -2.39 -0.02 2.27 16 37 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 38 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 40 H 0.10 5.60 6.16 -2.91 -0.02 5.58 16 41 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -58.77 337.59 2.76 -56.01 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 0.21 Total: 34.09 kcal Atomic # 6 Polarization: -66.41 SS G_CDS: 3.64 Total: -62.76 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -3.12 Total: -68.39 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -58.77 2.76 -56.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398989639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.211 kcal (2) G-P(sol) polarization free energy of solvation -58.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds