Wall clock time and date at job start Mon Mar 30 2020 07:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47611 * 2 1 4 4 C 1.52996 * 109.47732 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54506 * 330.66948 * 4 3 2 6 6 C 1.52995 * 117.50379 * 116.37728 * 4 3 2 7 7 C 1.52993 * 117.50473 * 185.00347 * 4 3 2 8 8 H 1.09001 * 117.49583 * 0.02562 * 7 4 3 9 9 N 1.46901 * 117.50292 * 145.01961 * 7 4 3 10 10 C 1.46904 * 110.99973 * 204.99857 * 9 7 4 11 11 C 1.50695 * 109.46899 * 179.97438 * 10 9 7 12 12 C 1.38641 * 119.74478 * 90.00437 * 11 10 9 13 13 C 1.37623 * 120.24505 * 179.97438 * 12 11 10 14 14 C 1.40709 * 119.74651 * 0.02562 * 13 12 11 15 15 C 1.41400 * 120.24396 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99939 * 335.04604 * 15 14 13 17 17 C 1.39949 * 120.00072 * 155.03646 * 15 14 13 18 18 N 1.30831 * 119.99674 * 334.24844 * 17 15 14 19 19 Si 1.86795 * 119.99952 * 154.23981 * 17 15 14 20 20 H 1.48502 * 109.46924 * 60.00556 * 19 17 15 21 21 H 1.48496 * 109.47267 * 300.00082 * 19 17 15 22 22 H 1.48503 * 109.47007 * 180.02562 * 19 17 15 23 23 C 1.40713 * 119.51467 * 0.27398 * 14 13 12 24 24 C 1.37626 * 119.74265 * 359.46711 * 23 14 13 25 25 H 1.08999 * 109.46767 * 299.99788 * 1 2 3 26 26 H 1.08999 * 109.47327 * 59.99579 * 1 2 3 27 27 H 1.09002 * 109.47524 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46439 * 239.99845 * 2 1 3 29 29 H 1.08999 * 109.47327 * 120.00420 * 2 1 3 30 30 H 1.08999 * 109.46883 * 60.00282 * 3 2 1 31 31 H 1.08999 * 109.47118 * 300.00549 * 3 2 1 32 32 H 1.09006 * 117.49567 * 0.02562 * 6 4 3 33 33 H 1.08999 * 117.50199 * 214.98773 * 6 4 3 34 34 H 1.00900 * 111.00307 * 81.04635 * 9 7 4 35 35 H 1.09006 * 109.46813 * 59.99846 * 10 9 7 36 36 H 1.08996 * 109.47155 * 300.00174 * 10 9 7 37 37 H 1.07995 * 119.87721 * 0.02562 * 12 11 10 38 38 H 1.07996 * 120.12365 * 179.97438 * 13 12 11 39 39 H 0.96994 * 120.00064 * 354.22828 * 18 17 15 40 40 H 1.08003 * 120.13068 * 179.70617 * 23 14 13 41 41 H 1.07991 * 119.87620 * 180.27696 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 4.0403 0.5849 0.4808 6 6 4.2761 2.0455 -1.2166 7 6 4.2766 2.7942 0.1176 8 1 3.6514 3.6837 0.1963 9 7 5.5372 2.8372 0.8707 10 6 5.7863 4.1833 1.4038 11 6 7.0846 4.1882 2.1688 12 6 8.2696 4.4797 1.5109 13 6 9.4610 4.4876 2.1997 14 6 9.4734 4.1978 3.5765 15 6 10.6917 4.2024 4.2944 16 1 11.6235 4.0249 3.7779 17 6 10.6900 4.4371 5.6740 18 7 9.7199 5.1250 6.2193 19 14 12.0728 3.7682 6.7369 20 1 13.3673 4.3334 6.2784 21 1 12.1115 2.2880 6.6249 22 1 11.8386 4.1511 8.1525 23 6 8.2655 3.8971 4.2326 24 6 7.0851 3.9003 3.5250 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9562 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.6505 2.4427 -2.0160 33 1 5.2109 1.5848 -1.5356 34 1 6.3095 2.5252 0.3013 35 1 4.9713 4.4669 2.0698 36 1 5.8467 4.8948 0.5802 37 1 8.2576 4.7022 0.4542 38 1 10.3830 4.7145 1.6851 39 1 9.0474 5.5430 5.6592 40 1 8.2641 3.6686 5.2881 41 1 6.1562 3.6743 4.0272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398994023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:13 Heat of formation + Delta-G solvation = 10.133986 kcal Electronic energy + Delta-G solvation = -18077.715371 eV Core-core repulsion = 15342.363238 eV Total energy + Delta-G solvation = -2735.352134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.52897 -37.69827 -35.08869 -34.02917 -32.54893 -29.72483 -29.19950 -27.32222 -25.80430 -23.13305 -22.17698 -21.18108 -20.99027 -20.47374 -19.90687 -17.90121 -15.74748 -15.56732 -15.17629 -14.58150 -14.47783 -14.04164 -13.83056 -13.65263 -13.42413 -12.91833 -12.48189 -12.33935 -12.18873 -12.05181 -11.97545 -11.57513 -11.41581 -11.12986 -11.09345 -10.95616 -10.78722 -10.52053 -10.39399 -10.33419 -9.85550 -9.59551 -9.43335 -8.96122 -7.92220 -7.66215 -7.48173 -7.16464 -4.42656 2.71641 2.90064 3.16256 3.25603 3.37094 3.83176 4.02949 4.24755 4.58744 4.78473 4.88237 4.91613 5.01843 5.10879 5.29656 5.42184 5.52234 5.60841 5.67471 5.69690 5.72728 5.79669 5.83758 5.89777 5.95276 6.10312 6.12399 6.17559 6.25479 6.33290 6.36902 6.79630 7.03644 7.16573 7.37674 7.41470 7.61765 7.74083 7.79413 7.83777 8.00603 8.21747 8.33830 8.77578 8.90701 10.06001 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034886 B = 0.003150 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.431259 B = 8885.502518 C = 9279.582233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.145 4.145 5 H 0.106 0.894 6 C -0.207 4.207 7 C 0.031 3.969 8 H 0.103 0.897 9 N -0.654 5.654 10 C 0.128 3.872 11 C -0.227 4.227 12 C -0.073 4.073 13 C -0.231 4.231 14 C 0.100 3.900 15 C -0.523 4.523 16 H 0.074 0.926 17 C 0.039 3.961 18 N -0.796 5.796 19 Si 1.065 2.935 20 H -0.276 1.276 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.223 4.223 24 C -0.058 4.058 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.341 0.659 35 H 0.063 0.937 36 H 0.021 0.979 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.299 0.701 40 H 0.104 0.896 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 -5.413 -9.590 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.125 4.125 4 C -0.164 4.164 5 H 0.124 0.876 6 C -0.246 4.246 7 C -0.081 4.081 8 H 0.121 0.879 9 N -0.283 5.283 10 C 0.000 4.000 11 C -0.229 4.229 12 C -0.092 4.092 13 C -0.250 4.250 14 C 0.097 3.903 15 C -0.551 4.551 16 H 0.093 0.907 17 C -0.183 4.183 18 N -0.419 5.419 19 Si 0.888 3.112 20 H -0.202 1.202 21 H -0.200 1.200 22 H -0.199 1.199 23 C -0.242 4.242 24 C -0.076 4.076 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.161 0.839 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.389 -5.704 -7.392 14.728 hybrid contribution -0.266 0.566 -2.515 2.592 sum -11.655 -5.138 -9.908 16.137 Atomic orbital electron populations 1.21786 0.96135 1.01439 1.01683 1.21501 0.95400 0.96901 1.02111 1.21173 0.92785 0.96822 1.01671 1.22599 0.94107 0.98414 1.01289 0.87608 1.23587 1.02953 1.05927 0.92129 1.22558 0.95199 0.95238 0.95066 0.87906 1.60385 1.02758 1.26667 1.38534 1.20568 0.96151 0.87190 0.96066 1.18840 0.92816 1.17037 0.94212 1.20416 0.92905 0.99140 0.96764 1.20892 0.95961 1.12452 0.95738 1.17683 0.92890 0.87927 0.91802 1.20576 0.94530 1.44880 0.95145 0.90748 1.27018 1.01082 0.93249 0.96972 1.70451 1.10696 1.18679 1.42096 0.83647 0.74287 0.77291 0.75946 1.20168 1.19984 1.19863 1.21152 0.92752 1.10574 0.99759 1.20438 0.96500 0.97426 0.93283 0.92757 0.92939 0.92899 0.92091 0.91875 0.91687 0.92237 0.89215 0.88988 0.83912 0.91843 0.96104 0.89731 0.89055 0.88706 0.87760 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.08 5.89 -26.74 -0.16 -1.24 16 3 C -0.09 -0.86 5.50 -26.74 -0.15 -1.00 16 4 C -0.14 -1.70 5.66 -90.63 -0.51 -2.21 16 5 H 0.11 1.36 8.07 -51.93 -0.42 0.94 16 6 C -0.21 -2.32 9.88 -26.74 -0.26 -2.59 16 7 C 0.03 0.40 6.03 -67.72 -0.41 -0.01 16 8 H 0.10 1.31 7.90 -51.93 -0.41 0.90 16 9 N -0.65 -10.53 6.77 -108.00 -0.73 -11.26 16 10 C 0.13 2.25 5.65 -4.98 -0.03 2.22 16 11 C -0.23 -4.89 5.41 -104.33 -0.56 -5.45 16 12 C -0.07 -1.63 9.67 -39.66 -0.38 -2.01 16 13 C -0.23 -5.71 9.80 -38.87 -0.38 -6.09 16 14 C 0.10 2.68 5.30 -106.83 -0.57 2.11 16 15 C -0.52 -14.08 8.98 -37.74 -0.34 -14.42 16 16 H 0.07 1.95 7.96 -52.48 -0.42 1.53 16 17 C 0.04 0.99 4.93 -17.34 -0.09 0.91 16 18 N -0.80 -21.37 12.31 55.55 0.68 -20.68 16 19 Si 1.06 21.75 30.00 -169.99 -5.10 16.65 16 20 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.22 -5.78 7.96 -38.87 -0.31 -6.09 16 24 C -0.06 -1.34 9.67 -39.66 -0.38 -1.73 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 32 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 33 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 34 H 0.34 5.48 8.51 -39.29 -0.33 5.15 16 35 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 37 H 0.08 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.30 8.24 6.70 -40.82 -0.27 7.97 16 40 H 0.10 2.80 6.49 -52.48 -0.34 2.46 16 41 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -26.97 339.47 -11.08 -38.04 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.88 Total: 10.53 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: -4.16 Total: -38.40 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: -0.05 Total: -31.95 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.10 Total: 16.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.97 -11.08 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398994023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.178 kcal (2) G-P(sol) polarization free energy of solvation -26.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds