Wall clock time and date at job start Mon Mar 30 2020 07:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47611 * 2 1 4 4 C 1.52996 * 109.47732 * 180.02562 * 3 2 1 5 5 H 1.09003 * 115.54506 * 330.66948 * 4 3 2 6 6 C 1.52995 * 117.50379 * 116.37728 * 4 3 2 7 7 C 1.52993 * 117.50473 * 185.00347 * 4 3 2 8 8 H 1.09001 * 117.49583 * 0.02562 * 7 4 3 9 9 N 1.46901 * 117.50292 * 145.01961 * 7 4 3 10 10 C 1.46904 * 110.99973 * 204.99857 * 9 7 4 11 11 C 1.50695 * 109.46899 * 179.97438 * 10 9 7 12 12 C 1.38641 * 119.74478 * 90.00437 * 11 10 9 13 13 C 1.37623 * 120.24505 * 179.97438 * 12 11 10 14 14 C 1.40709 * 119.74651 * 0.02562 * 13 12 11 15 15 C 1.41400 * 120.24396 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99939 * 335.04604 * 15 14 13 17 17 C 1.39949 * 120.00072 * 155.03646 * 15 14 13 18 18 N 1.30831 * 119.99674 * 334.24844 * 17 15 14 19 19 Si 1.86795 * 119.99952 * 154.23981 * 17 15 14 20 20 H 1.48502 * 109.46924 * 60.00556 * 19 17 15 21 21 H 1.48496 * 109.47267 * 300.00082 * 19 17 15 22 22 H 1.48503 * 109.47007 * 180.02562 * 19 17 15 23 23 C 1.40713 * 119.51467 * 0.27398 * 14 13 12 24 24 C 1.37626 * 119.74265 * 359.46711 * 23 14 13 25 25 H 1.08999 * 109.46767 * 299.99788 * 1 2 3 26 26 H 1.08999 * 109.47327 * 59.99579 * 1 2 3 27 27 H 1.09002 * 109.47524 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46439 * 239.99845 * 2 1 3 29 29 H 1.08999 * 109.47327 * 120.00420 * 2 1 3 30 30 H 1.08999 * 109.46883 * 60.00282 * 3 2 1 31 31 H 1.08999 * 109.47118 * 300.00549 * 3 2 1 32 32 H 1.09006 * 117.49567 * 0.02562 * 6 4 3 33 33 H 1.08999 * 117.50199 * 214.98773 * 6 4 3 34 34 H 1.00900 * 111.00307 * 81.04635 * 9 7 4 35 35 H 1.09006 * 109.46813 * 59.99846 * 10 9 7 36 36 H 1.08996 * 109.47155 * 300.00174 * 10 9 7 37 37 H 1.07995 * 119.87721 * 0.02562 * 12 11 10 38 38 H 1.07996 * 120.12365 * 179.97438 * 13 12 11 39 39 H 0.96994 * 120.00064 * 354.22828 * 18 17 15 40 40 H 1.08003 * 120.13068 * 179.70617 * 23 14 13 41 41 H 1.07991 * 119.87620 * 180.27696 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 4.0403 0.5849 0.4808 6 6 4.2761 2.0455 -1.2166 7 6 4.2766 2.7942 0.1176 8 1 3.6514 3.6837 0.1963 9 7 5.5372 2.8372 0.8707 10 6 5.7863 4.1833 1.4038 11 6 7.0846 4.1882 2.1688 12 6 8.2696 4.4797 1.5109 13 6 9.4610 4.4876 2.1997 14 6 9.4734 4.1978 3.5765 15 6 10.6917 4.2024 4.2944 16 1 11.6235 4.0249 3.7779 17 6 10.6900 4.4371 5.6740 18 7 9.7199 5.1250 6.2193 19 14 12.0728 3.7682 6.7369 20 1 13.3673 4.3334 6.2784 21 1 12.1115 2.2880 6.6249 22 1 11.8386 4.1511 8.1525 23 6 8.2655 3.8971 4.2326 24 6 7.0851 3.9003 3.5250 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9562 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.6505 2.4427 -2.0160 33 1 5.2109 1.5848 -1.5356 34 1 6.3095 2.5252 0.3013 35 1 4.9713 4.4669 2.0698 36 1 5.8467 4.8948 0.5802 37 1 8.2576 4.7022 0.4542 38 1 10.3830 4.7145 1.6851 39 1 9.0474 5.5430 5.6592 40 1 8.2641 3.6686 5.2881 41 1 6.1562 3.6743 4.0272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398994023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:13 Heat of formation + Delta-G solvation = -2.532937 kcal Electronic energy + Delta-G solvation = -18078.264650 eV Core-core repulsion = 15342.363238 eV Total energy + Delta-G solvation = -2735.901413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.92657 -39.15512 -36.49142 -35.36531 -33.84896 -31.53882 -30.99114 -28.30776 -27.37243 -24.80193 -23.06766 -22.91539 -21.99310 -21.86464 -21.22362 -19.84335 -17.01933 -16.71127 -16.36815 -16.22248 -15.94322 -15.64873 -15.30606 -14.95034 -14.40241 -14.13457 -13.91341 -13.86695 -13.78961 -13.40944 -13.06175 -12.88588 -12.70713 -12.58970 -12.19015 -12.18577 -11.97721 -11.88663 -11.64178 -11.56203 -11.34610 -11.25319 -10.88204 -10.75300 -9.59960 -9.46894 -9.15553 -9.03526 -6.45535 0.86564 0.95637 1.49643 1.62459 1.79368 2.32964 2.61697 2.88193 3.21570 3.60158 3.91018 3.99442 4.05405 4.21182 4.22156 4.26475 4.33362 4.42405 4.44851 4.60329 4.67152 4.71076 4.85282 4.88910 4.89724 4.94508 4.97498 5.09664 5.12618 5.21688 5.24181 5.38634 5.41682 5.44230 5.52814 5.73873 5.79109 5.84080 6.08111 6.20611 6.26357 6.40962 6.45244 6.80148 6.94753 8.03474 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034886 B = 0.003150 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.431259 B = 8885.502518 C = 9279.582233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.143 4.143 5 H 0.091 0.909 6 C -0.190 4.190 7 C 0.014 3.986 8 H 0.111 0.889 9 N -0.666 5.666 10 C 0.135 3.865 11 C -0.208 4.208 12 C -0.072 4.072 13 C -0.246 4.246 14 C 0.069 3.931 15 C -0.562 4.562 16 H 0.070 0.930 17 C 0.002 3.998 18 N -0.819 5.819 19 Si 1.117 2.883 20 H -0.256 1.256 21 H -0.265 1.265 22 H -0.270 1.270 23 C -0.241 4.241 24 C -0.066 4.066 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.340 0.660 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.283 0.717 40 H 0.084 0.916 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.853 -5.879 -11.342 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.120 4.120 4 C -0.163 4.163 5 H 0.109 0.891 6 C -0.229 4.229 7 C -0.097 4.097 8 H 0.129 0.871 9 N -0.295 5.295 10 C 0.007 3.993 11 C -0.210 4.210 12 C -0.091 4.091 13 C -0.266 4.266 14 C 0.067 3.933 15 C -0.590 4.590 16 H 0.088 0.912 17 C -0.213 4.213 18 N -0.442 5.442 19 Si 0.934 3.066 20 H -0.181 1.181 21 H -0.190 1.190 22 H -0.195 1.195 23 C -0.260 4.260 24 C -0.085 4.085 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.160 0.840 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.137 0.863 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.660 -6.170 -9.174 16.808 hybrid contribution -0.049 0.690 -2.158 2.266 sum -12.709 -5.481 -11.333 17.888 Atomic orbital electron populations 1.21773 0.95130 1.02005 1.01986 1.21486 0.96279 0.96239 1.01844 1.21162 0.91354 0.97490 1.02025 1.22620 0.95222 0.96961 1.01450 0.89098 1.23623 1.03045 1.04406 0.91786 1.22611 0.94130 0.96334 0.96582 0.87134 1.60275 1.03983 1.25491 1.39790 1.20465 0.93829 0.88660 0.96329 1.19315 0.94652 1.13342 0.93655 1.20764 0.92022 0.97876 0.98389 1.21122 0.97424 1.12746 0.95269 1.18015 0.93320 0.88906 0.93091 1.20768 0.94588 1.47367 0.96303 0.91157 1.28453 1.02547 0.92231 0.98115 1.70568 1.11580 1.20482 1.41564 0.83020 0.72123 0.77175 0.74332 1.18072 1.18988 1.19501 1.21110 0.93803 1.11990 0.99136 1.20692 0.96180 0.97270 0.94359 0.92861 0.92229 0.92264 0.91822 0.92733 0.92133 0.91030 0.87327 0.89017 0.84023 0.91331 0.94335 0.86287 0.88614 0.90518 0.89756 0.87744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.91 5.89 30.59 0.18 -1.73 16 3 C -0.08 -1.43 5.50 30.59 0.17 -1.26 16 4 C -0.14 -3.04 5.66 -10.80 -0.06 -3.10 16 5 H 0.09 2.22 8.07 -2.39 -0.02 2.20 16 6 C -0.19 -3.68 9.88 30.59 0.30 -3.37 16 7 C 0.01 0.33 6.03 44.91 0.27 0.60 16 8 H 0.11 2.46 7.90 -2.39 -0.02 2.44 16 9 N -0.67 -19.87 6.77 -495.59 -3.35 -23.22 16 10 C 0.14 4.38 5.65 85.55 0.48 4.87 16 11 C -0.21 -8.62 5.41 -19.68 -0.11 -8.72 16 12 C -0.07 -3.07 9.67 22.22 0.21 -2.85 16 13 C -0.25 -12.22 9.80 22.73 0.22 -12.00 16 14 C 0.07 3.83 5.30 -21.29 -0.11 3.71 16 15 C -0.56 -31.36 8.98 23.46 0.21 -31.15 16 16 H 0.07 3.82 7.96 -2.91 -0.02 3.80 16 17 C 0.00 0.12 4.93 85.26 0.42 0.54 16 18 N -0.82 -45.67 12.31 21.83 0.27 -45.40 16 19 Si 1.12 44.38 30.00 68.60 2.06 46.44 16 20 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 21 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 23 C -0.24 -12.90 7.96 22.73 0.18 -12.72 16 24 C -0.07 -3.09 9.67 22.22 0.21 -2.87 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 32 H 0.11 1.72 8.03 -2.38 -0.02 1.70 16 33 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 34 H 0.34 10.13 8.51 -89.69 -0.76 9.37 16 35 H 0.07 2.18 8.08 -2.38 -0.02 2.16 16 36 H 0.04 1.14 8.08 -2.39 -0.02 1.12 16 37 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.10 4.55 8.06 -2.91 -0.02 4.52 16 39 H 0.28 16.40 6.70 -92.71 -0.62 15.78 16 40 H 0.08 4.77 6.49 -2.91 -0.02 4.75 16 41 H 0.10 4.48 8.06 -2.92 -0.02 4.46 16 Total: -1.00 -59.50 339.47 2.65 -56.85 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: 0.37 Total: 36.70 kcal Atomic # 6 Polarization: -74.67 SS G_CDS: 3.30 Total: -71.36 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -3.09 Total: -68.62 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.06 Total: 46.44 kcal Total: -59.50 2.65 -56.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398994023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.315 kcal (2) G-P(sol) polarization free energy of solvation -59.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds