Wall clock time and date at job start Mon Mar 30 2020 07:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47276 * 2 1 4 4 C 1.53005 * 109.47518 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.55573 * 29.31394 * 4 3 2 6 6 C 1.52996 * 117.50078 * 243.62288 * 4 3 2 7 7 C 1.53001 * 117.49807 * 174.99750 * 4 3 2 8 8 H 1.08996 * 117.50306 * 0.02562 * 7 4 3 9 9 N 1.46900 * 117.49822 * 215.00443 * 7 4 3 10 10 C 1.46900 * 111.00041 * 155.09184 * 9 7 4 11 11 C 1.50701 * 109.46905 * 180.02562 * 10 9 7 12 12 C 1.38640 * 119.74306 * 269.71987 * 11 10 9 13 13 C 1.37624 * 120.24232 * 179.76221 * 12 11 10 14 14 C 1.40714 * 119.74592 * 0.53742 * 13 12 11 15 15 C 1.41393 * 120.24706 * 179.73907 * 14 13 12 16 16 H 1.08001 * 120.00378 * 204.37820 * 15 14 13 17 17 C 1.39950 * 119.99625 * 24.37560 * 15 14 13 18 18 N 1.30827 * 120.00174 * 17.87119 * 17 15 14 19 19 Si 1.86803 * 120.00159 * 197.86470 * 17 15 14 20 20 H 1.48501 * 109.46697 * 60.00260 * 19 17 15 21 21 H 1.48493 * 109.47101 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47108 * 300.00474 * 19 17 15 23 23 C 1.40721 * 119.51283 * 359.72015 * 14 13 12 24 24 C 1.37621 * 119.74345 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.46875 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46996 * 299.99734 * 1 2 3 27 27 H 1.08997 * 109.47135 * 59.99884 * 1 2 3 28 28 H 1.09003 * 109.47244 * 239.99917 * 2 1 3 29 29 H 1.08997 * 109.47555 * 119.99781 * 2 1 3 30 30 H 1.09003 * 109.47052 * 59.99799 * 3 2 1 31 31 H 1.09002 * 109.47312 * 300.00552 * 3 2 1 32 32 H 1.09000 * 117.49660 * 145.02303 * 6 4 3 33 33 H 1.09000 * 117.49636 * 0.02562 * 6 4 3 34 34 H 1.00899 * 110.99985 * 31.13256 * 9 7 4 35 35 H 1.09002 * 109.47135 * 299.99879 * 10 9 7 36 36 H 1.08996 * 109.47290 * 59.99943 * 10 9 7 37 37 H 1.07997 * 119.87827 * 0.02562 * 12 11 10 38 38 H 1.08004 * 120.12817 * 180.28012 * 13 12 11 39 39 H 0.96993 * 120.00236 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.12862 * 180.02562 * 23 14 13 41 41 H 1.07995 * 119.87871 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 4.0405 0.5850 -0.4805 6 6 4.2760 2.0457 1.2166 7 6 4.2765 2.7945 -0.1176 8 1 3.6513 3.6840 -0.1954 9 7 5.5367 2.8377 -0.8712 10 6 5.7867 4.1844 -1.4023 11 6 7.0847 4.1894 -2.1680 12 6 8.2694 4.4846 -1.5113 13 6 9.4613 4.4873 -2.1995 14 6 9.4728 4.2001 -3.5769 15 6 10.6905 4.2054 -4.2954 16 1 10.6879 4.3792 -5.3614 17 6 11.8993 3.9855 -3.6253 18 7 11.8983 3.4385 -2.4369 19 14 13.5143 4.4729 -4.4277 20 1 13.5130 5.9336 -4.6952 21 1 14.6397 4.1365 -3.5192 22 1 13.6738 3.7355 -5.7068 23 6 8.2634 3.9072 -4.2341 24 6 7.0841 3.9050 -3.5248 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 5.2110 1.5850 1.5355 33 1 3.6504 2.4420 2.0164 34 1 5.5396 2.1511 -1.6105 35 1 4.9717 4.4696 -2.0676 36 1 5.8480 4.8945 -0.5777 37 1 8.2576 4.7091 -0.4550 38 1 10.3837 4.7131 -1.6851 39 1 12.7360 3.2857 -1.9726 40 1 8.2608 3.6850 -5.2909 41 1 6.1546 3.6809 -4.0270 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398994024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:16 Heat of formation + Delta-G solvation = 16.567227 kcal Electronic energy + Delta-G solvation = -18060.357460 eV Core-core repulsion = 15325.284292 eV Total energy + Delta-G solvation = -2735.073168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.43275 -37.49939 -34.94488 -33.85758 -32.55189 -29.72963 -29.18224 -27.34962 -25.98475 -23.14628 -22.05352 -20.97452 -20.78541 -20.60619 -19.72625 -17.27312 -15.79976 -15.41600 -15.25961 -15.14425 -14.20696 -14.04413 -13.65190 -13.57359 -13.24105 -12.92768 -12.59574 -12.30796 -12.13076 -11.91658 -11.65555 -11.49361 -11.41269 -11.10792 -11.06608 -10.95779 -10.89738 -10.51927 -10.47234 -10.20010 -9.83241 -9.53251 -9.33985 -9.10289 -7.88754 -7.41743 -7.28404 -6.73952 -4.33237 2.77035 3.07175 3.09699 3.10467 3.20364 3.88181 3.94073 4.29213 4.63117 4.77667 4.89904 4.92039 5.09280 5.17075 5.38917 5.42578 5.58385 5.64386 5.68499 5.75251 5.80823 5.87223 5.90964 5.94611 6.04662 6.09953 6.18122 6.30299 6.35157 6.38126 6.47962 6.98468 7.09073 7.32242 7.38431 7.48842 7.63819 7.73902 7.92026 8.07767 8.17744 8.32507 8.66912 8.91536 9.00381 10.20284 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.043287 B = 0.003053 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.693019 B = 9169.874268 C = 9268.982374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.168 4.168 5 H 0.104 0.896 6 C -0.168 4.168 7 C 0.024 3.976 8 H 0.093 0.907 9 N -0.654 5.654 10 C 0.127 3.873 11 C -0.215 4.215 12 C -0.078 4.078 13 C -0.168 4.168 14 C 0.113 3.887 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.791 5.791 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.266 1.266 23 C -0.228 4.228 24 C -0.085 4.085 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.342 0.658 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.281 0.719 40 H 0.090 0.910 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.144 -3.151 4.881 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.125 4.125 4 C -0.187 4.187 5 H 0.122 0.878 6 C -0.206 4.206 7 C -0.087 4.087 8 H 0.111 0.889 9 N -0.285 5.285 10 C 0.000 4.000 11 C -0.217 4.217 12 C -0.097 4.097 13 C -0.188 4.188 14 C 0.110 3.890 15 C -0.493 4.493 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.416 5.416 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.248 4.248 24 C -0.104 4.104 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.162 0.838 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.582 -3.133 5.614 15.027 hybrid contribution 0.214 0.086 -0.981 1.008 sum -13.367 -3.047 4.633 14.472 Atomic orbital electron populations 1.21784 0.96116 1.01459 1.01682 1.21504 0.95424 0.96873 1.02138 1.21196 0.92796 0.96828 1.01672 1.22750 0.94293 0.97656 1.04039 0.87779 1.23283 1.02004 1.03955 0.91386 1.22519 0.92469 0.94429 0.99243 0.88936 1.60396 1.30143 1.07625 1.30301 1.20594 0.94582 0.88824 0.96018 1.18898 0.93362 1.15927 0.93502 1.20510 0.92601 0.99480 0.97143 1.21319 0.96465 1.05584 0.95388 1.17623 0.92044 0.87159 0.92177 1.19565 0.90529 1.43367 0.95865 0.90546 1.25918 1.01324 0.92352 0.94624 1.69827 1.29422 1.29427 1.12934 0.86382 0.80270 0.80273 0.79870 1.18836 1.20346 1.19038 1.20927 0.93166 1.12173 0.98510 1.20355 0.96187 1.00241 0.93577 0.92879 0.92869 0.92829 0.92004 0.91932 0.92032 0.91986 0.88489 0.89372 0.83837 0.96258 0.91906 0.89460 0.86502 0.90814 0.89169 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.05 5.89 -26.73 -0.16 -1.21 16 3 C -0.09 -0.84 5.50 -26.73 -0.15 -0.98 16 4 C -0.17 -1.94 5.54 -90.62 -0.50 -2.45 16 5 H 0.10 1.26 8.08 -51.93 -0.42 0.84 16 6 C -0.17 -2.07 10.10 -26.73 -0.27 -2.34 16 7 C 0.02 0.33 5.97 -67.71 -0.40 -0.07 16 8 H 0.09 1.21 7.90 -51.93 -0.41 0.80 16 9 N -0.65 -10.92 6.74 -107.99 -0.73 -11.65 16 10 C 0.13 2.29 5.66 -4.98 -0.03 2.26 16 11 C -0.22 -4.71 5.41 -104.33 -0.56 -5.28 16 12 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 13 C -0.17 -4.44 8.70 -38.87 -0.34 -4.78 16 14 C 0.11 3.04 5.58 -106.82 -0.60 2.44 16 15 C -0.46 -12.44 9.05 -37.74 -0.34 -12.78 16 16 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 17 C 0.08 1.92 5.14 -17.34 -0.09 1.84 16 18 N -0.79 -20.73 10.95 55.55 0.61 -20.13 16 19 Si 0.91 18.80 29.60 -169.99 -5.03 13.77 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 23 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 24 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 34 H 0.34 5.73 8.68 -39.29 -0.34 5.39 16 35 H 0.02 0.32 8.08 -51.93 -0.42 -0.09 16 36 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 37 H 0.09 1.94 8.06 -52.49 -0.42 1.51 16 38 H 0.12 3.19 6.15 -52.48 -0.32 2.86 16 39 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 40 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.08 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -26.99 340.43 -11.17 -38.16 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.94 Total: 9.42 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: -4.22 Total: -34.70 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: -0.12 Total: -31.78 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.99 -11.17 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398994024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.731 kcal (2) G-P(sol) polarization free energy of solvation -26.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds