Wall clock time and date at job start Mon Mar 30 2020 07:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47276 * 2 1 4 4 C 1.53005 * 109.47518 * 179.97438 * 3 2 1 5 5 H 1.09003 * 115.55573 * 29.31394 * 4 3 2 6 6 C 1.52996 * 117.50078 * 243.62288 * 4 3 2 7 7 C 1.53001 * 117.49807 * 174.99750 * 4 3 2 8 8 H 1.08996 * 117.50306 * 0.02562 * 7 4 3 9 9 N 1.46900 * 117.49822 * 215.00443 * 7 4 3 10 10 C 1.46900 * 111.00041 * 155.09184 * 9 7 4 11 11 C 1.50701 * 109.46905 * 180.02562 * 10 9 7 12 12 C 1.38640 * 119.74306 * 269.71987 * 11 10 9 13 13 C 1.37624 * 120.24232 * 179.76221 * 12 11 10 14 14 C 1.40714 * 119.74592 * 0.53742 * 13 12 11 15 15 C 1.41393 * 120.24706 * 179.73907 * 14 13 12 16 16 H 1.08001 * 120.00378 * 204.37820 * 15 14 13 17 17 C 1.39950 * 119.99625 * 24.37560 * 15 14 13 18 18 N 1.30827 * 120.00174 * 17.87119 * 17 15 14 19 19 Si 1.86803 * 120.00159 * 197.86470 * 17 15 14 20 20 H 1.48501 * 109.46697 * 60.00260 * 19 17 15 21 21 H 1.48493 * 109.47101 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47108 * 300.00474 * 19 17 15 23 23 C 1.40721 * 119.51283 * 359.72015 * 14 13 12 24 24 C 1.37621 * 119.74345 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.46875 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46996 * 299.99734 * 1 2 3 27 27 H 1.08997 * 109.47135 * 59.99884 * 1 2 3 28 28 H 1.09003 * 109.47244 * 239.99917 * 2 1 3 29 29 H 1.08997 * 109.47555 * 119.99781 * 2 1 3 30 30 H 1.09003 * 109.47052 * 59.99799 * 3 2 1 31 31 H 1.09002 * 109.47312 * 300.00552 * 3 2 1 32 32 H 1.09000 * 117.49660 * 145.02303 * 6 4 3 33 33 H 1.09000 * 117.49636 * 0.02562 * 6 4 3 34 34 H 1.00899 * 110.99985 * 31.13256 * 9 7 4 35 35 H 1.09002 * 109.47135 * 299.99879 * 10 9 7 36 36 H 1.08996 * 109.47290 * 59.99943 * 10 9 7 37 37 H 1.07997 * 119.87827 * 0.02562 * 12 11 10 38 38 H 1.08004 * 120.12817 * 180.28012 * 13 12 11 39 39 H 0.96993 * 120.00236 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.12862 * 180.02562 * 23 14 13 41 41 H 1.07995 * 119.87871 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 4.0405 0.5850 -0.4805 6 6 4.2760 2.0457 1.2166 7 6 4.2765 2.7945 -0.1176 8 1 3.6513 3.6840 -0.1954 9 7 5.5367 2.8377 -0.8712 10 6 5.7867 4.1844 -1.4023 11 6 7.0847 4.1894 -2.1680 12 6 8.2694 4.4846 -1.5113 13 6 9.4613 4.4873 -2.1995 14 6 9.4728 4.2001 -3.5769 15 6 10.6905 4.2054 -4.2954 16 1 10.6879 4.3792 -5.3614 17 6 11.8993 3.9855 -3.6253 18 7 11.8983 3.4385 -2.4369 19 14 13.5143 4.4729 -4.4277 20 1 13.5130 5.9336 -4.6952 21 1 14.6397 4.1365 -3.5192 22 1 13.6738 3.7355 -5.7068 23 6 8.2634 3.9072 -4.2341 24 6 7.0841 3.9050 -3.5248 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 5.2110 1.5850 1.5355 33 1 3.6504 2.4420 2.0164 34 1 5.5396 2.1511 -1.6105 35 1 4.9717 4.4696 -2.0676 36 1 5.8480 4.8945 -0.5777 37 1 8.2576 4.7091 -0.4550 38 1 10.3837 4.7131 -1.6851 39 1 12.7360 3.2857 -1.9726 40 1 8.2608 3.6850 -5.2909 41 1 6.1546 3.6809 -4.0270 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398994024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:15 Heat of formation + Delta-G solvation = 3.887820 kcal Electronic energy + Delta-G solvation = -18060.907280 eV Core-core repulsion = 15325.284292 eV Total energy + Delta-G solvation = -2735.622988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.75711 -39.03688 -36.26888 -35.26323 -33.88255 -31.48614 -31.05233 -28.33917 -27.51990 -24.80949 -22.85545 -22.81670 -21.89468 -21.77613 -21.21157 -19.21344 -17.20053 -16.92924 -16.53641 -15.95303 -15.76261 -15.68720 -15.15866 -14.88012 -14.36973 -14.25141 -13.82150 -13.80395 -13.43660 -13.38409 -12.99850 -12.85795 -12.71548 -12.65070 -12.29975 -12.17777 -12.05838 -11.90963 -11.66052 -11.47122 -11.24451 -11.20031 -11.00840 -10.70990 -9.34363 -9.27855 -9.04203 -8.62908 -6.33027 0.95607 1.15820 1.37434 1.48859 1.53299 2.20666 2.68560 2.90199 3.24891 3.77772 3.86939 4.03272 4.18905 4.24068 4.29332 4.32495 4.39466 4.48324 4.57546 4.63716 4.69314 4.79311 4.88850 4.91790 4.97364 5.02516 5.07425 5.15293 5.16469 5.21913 5.39149 5.39648 5.41782 5.47285 5.52140 5.71979 5.95339 6.10865 6.20665 6.31289 6.39834 6.49282 6.71830 6.94832 7.05213 8.33703 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.043287 B = 0.003053 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.693019 B = 9169.874268 C = 9268.982374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.152 4.152 5 H 0.097 0.903 6 C -0.167 4.167 7 C 0.010 3.990 8 H 0.104 0.896 9 N -0.668 5.668 10 C 0.135 3.865 11 C -0.202 4.202 12 C -0.086 4.086 13 C -0.193 4.193 14 C 0.079 3.921 15 C -0.503 4.503 16 H 0.075 0.925 17 C 0.033 3.967 18 N -0.826 5.826 19 Si 0.983 3.017 20 H -0.260 1.260 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.244 4.244 24 C -0.084 4.084 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.340 0.660 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.288 0.712 40 H 0.096 0.904 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.815 -3.247 5.118 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.120 4.120 4 C -0.172 4.172 5 H 0.115 0.885 6 C -0.205 4.205 7 C -0.100 4.100 8 H 0.121 0.879 9 N -0.298 5.298 10 C 0.007 3.993 11 C -0.204 4.204 12 C -0.105 4.105 13 C -0.213 4.213 14 C 0.077 3.923 15 C -0.532 4.532 16 H 0.093 0.907 17 C -0.181 4.181 18 N -0.452 5.452 19 Si 0.803 3.197 20 H -0.185 1.185 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.263 4.263 24 C -0.102 4.102 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.159 0.841 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.278 -3.235 5.860 16.680 hybrid contribution 0.567 0.077 -0.983 1.138 sum -14.710 -3.158 4.877 15.816 Atomic orbital electron populations 1.21770 0.95119 1.02002 1.02005 1.21493 0.96296 0.96175 1.01939 1.21192 0.91074 0.97575 1.02208 1.22767 0.95505 0.96089 1.02797 0.88506 1.23321 1.01878 1.03623 0.91710 1.22579 0.91761 0.95967 0.99736 0.87864 1.60283 1.32589 1.06659 1.30308 1.20483 0.92784 0.89882 0.96104 1.19331 0.94481 1.12881 0.93681 1.20738 0.92641 0.99328 0.97821 1.21282 0.96819 1.07487 0.95662 1.17977 0.93231 0.88340 0.92801 1.19822 0.91747 1.45542 0.96111 0.90679 1.26794 1.04662 0.91570 0.95112 1.69889 1.30705 1.30222 1.14357 0.85248 0.75566 0.79838 0.79015 1.18473 1.19194 1.18292 1.21158 0.93547 1.12508 0.99123 1.20689 0.96653 0.99027 0.93856 0.92294 0.92375 0.92682 0.92400 0.92011 0.91164 0.91738 0.89993 0.87489 0.84115 0.94386 0.91394 0.88223 0.88394 0.90184 0.88567 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.19 16 2 C -0.12 -1.83 5.89 30.59 0.18 -1.65 16 3 C -0.08 -1.37 5.50 30.60 0.17 -1.20 16 4 C -0.15 -3.19 5.54 -10.79 -0.06 -3.25 16 5 H 0.10 2.20 8.08 -2.39 -0.02 2.18 16 6 C -0.17 -3.78 10.10 30.59 0.31 -3.47 16 7 C 0.01 0.24 5.97 44.92 0.27 0.51 16 8 H 0.10 2.37 7.90 -2.39 -0.02 2.35 16 9 N -0.67 -21.07 6.74 -495.57 -3.34 -24.40 16 10 C 0.14 4.55 5.66 85.56 0.48 5.04 16 11 C -0.20 -8.62 5.41 -19.67 -0.11 -8.72 16 12 C -0.09 -4.15 9.67 22.22 0.21 -3.94 16 13 C -0.19 -10.55 8.70 22.73 0.20 -10.35 16 14 C 0.08 4.40 5.58 -21.29 -0.12 4.28 16 15 C -0.50 -27.93 9.05 23.46 0.21 -27.72 16 16 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 17 C 0.03 1.73 5.14 85.26 0.44 2.17 16 18 N -0.83 -44.67 10.95 21.83 0.24 -44.43 16 19 Si 0.98 39.09 29.60 68.60 2.03 41.12 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 23 C -0.24 -12.22 9.80 22.73 0.22 -12.00 16 24 C -0.08 -3.65 9.67 22.22 0.21 -3.43 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.06 7.87 -2.39 -0.02 1.04 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.11 2.01 8.03 -2.39 -0.02 1.99 16 34 H 0.34 10.82 8.68 -89.69 -0.78 10.04 16 35 H 0.04 1.15 8.08 -2.39 -0.02 1.13 16 36 H 0.07 2.23 8.08 -2.39 -0.02 2.21 16 37 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 38 H 0.10 5.62 6.15 -2.91 -0.02 5.60 16 39 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 40 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -59.17 340.43 2.48 -56.69 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: 0.21 Total: 35.95 kcal Atomic # 6 Polarization: -68.27 SS G_CDS: 3.34 Total: -64.93 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -3.10 Total: -68.84 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -59.17 2.48 -56.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398994024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.576 kcal (2) G-P(sol) polarization free energy of solvation -59.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds