Wall clock time and date at job start Mon Mar 30 2020 07:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50706 * 119.99466 * 2 1 4 4 C 1.30998 * 120.00464 * 180.02562 * 2 1 3 5 5 C 1.50701 * 119.99835 * 5.59985 * 4 2 1 6 6 C 1.52995 * 109.47029 * 125.03262 * 5 4 2 7 7 N 1.46908 * 109.47047 * 180.02562 * 6 5 4 8 8 C 1.46893 * 110.99881 * 179.97438 * 7 6 5 9 9 C 1.50708 * 109.46972 * 179.97438 * 8 7 6 10 10 C 1.38629 * 119.75131 * 269.73069 * 9 8 7 11 11 C 1.37624 * 120.24424 * 179.71936 * 10 9 8 12 12 C 1.40714 * 119.74661 * 0.56925 * 11 10 9 13 13 C 1.41395 * 120.24465 * 179.67709 * 12 11 10 14 14 H 1.08000 * 119.99965 * 204.51802 * 13 12 11 15 15 C 1.39948 * 119.99869 * 24.52764 * 13 12 11 16 16 N 1.30824 * 119.99953 * 15.59670 * 15 13 12 17 17 Si 1.86800 * 120.00098 * 195.60069 * 15 13 12 18 18 H 1.48501 * 109.46798 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46995 * 119.99748 * 17 15 13 20 20 H 1.48496 * 109.46800 * 239.99822 * 17 15 13 21 21 C 1.40718 * 119.51115 * 359.70899 * 12 11 10 22 22 C 1.37624 * 119.74288 * 359.97438 * 21 12 11 23 23 H 1.09005 * 109.46809 * 238.82448 * 1 2 3 24 24 H 1.08995 * 109.47701 * 358.81894 * 1 2 3 25 25 H 1.09000 * 109.47334 * 118.82492 * 1 2 3 26 26 H 1.09004 * 109.46872 * 269.99609 * 3 2 1 27 27 H 1.08998 * 109.47568 * 30.00261 * 3 2 1 28 28 H 1.09001 * 109.46686 * 150.00506 * 3 2 1 29 29 H 1.07999 * 119.99751 * 185.59866 * 4 2 1 30 30 H 1.09000 * 109.47210 * 5.02489 * 5 4 2 31 31 H 1.09007 * 109.46557 * 245.02864 * 5 4 2 32 32 H 1.08990 * 109.47609 * 59.99566 * 6 5 4 33 33 H 1.09007 * 109.47127 * 299.99254 * 6 5 4 34 34 H 1.00896 * 110.99662 * 56.04060 * 7 6 5 35 35 H 1.08997 * 109.47427 * 299.99714 * 8 7 6 36 36 H 1.08997 * 109.47264 * 60.00448 * 8 7 6 37 37 H 1.07999 * 119.87882 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.12538 * 180.27983 * 11 10 9 39 39 H 0.96996 * 120.00159 * 180.02562 * 16 15 13 40 40 H 1.08000 * 120.12645 * 179.97438 * 21 12 11 41 41 H 1.07997 * 119.86874 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1620 -1.1344 -0.0005 5 6 1.4140 -2.4364 -0.1284 6 6 1.9761 -3.2338 -1.3070 7 7 1.2465 -4.5027 -1.4321 8 6 1.7598 -5.2965 -2.5565 9 6 0.9893 -6.5881 -2.6527 10 6 1.4341 -7.7073 -1.9661 11 6 0.7351 -8.8904 -2.0422 12 6 -0.4283 -8.9645 -2.8302 13 6 -1.1508 -10.1766 -2.9213 14 1 -1.7735 -10.3706 -3.7821 15 6 -1.0590 -11.1246 -1.8960 16 7 -0.5673 -10.7842 -0.7324 17 14 -1.6386 -12.8761 -2.1887 18 1 -2.1494 -13.0028 -3.5773 19 1 -0.5032 -13.8127 -1.9911 20 1 -2.7242 -13.2049 -1.2304 21 6 -0.8672 -7.8237 -3.5274 22 6 -0.1560 -6.6493 -3.4314 23 1 -0.3633 -0.5320 0.8793 24 1 -0.3634 1.0274 0.0212 25 1 -0.3634 -0.4955 -0.9003 26 1 2.4421 1.6198 -1.0277 27 1 1.6713 2.0648 0.5138 28 1 3.2128 1.1749 0.5138 29 1 3.2382 -1.1366 0.0907 30 1 0.3568 -2.2328 -0.2986 31 1 1.5298 -3.0136 0.7890 32 1 3.0332 -3.4373 -1.1368 33 1 1.8603 -2.6566 -2.2244 34 1 0.2549 -4.3419 -1.5263 35 1 1.6426 -4.7333 -3.4823 36 1 2.8154 -5.5148 -2.3951 37 1 2.3301 -7.6494 -1.3660 38 1 1.0808 -9.7598 -1.5029 39 1 -0.5034 -11.4413 -0.0219 40 1 -1.7586 -7.8695 -4.1354 41 1 -0.4912 -5.7724 -3.9653 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398997317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:50 Heat of formation + Delta-G solvation = -4.112478 kcal Electronic energy + Delta-G solvation = -17964.229270 eV Core-core repulsion = 15228.259363 eV Total energy + Delta-G solvation = -2735.969907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -39.61158 -38.31980 -36.75303 -35.38353 -32.80803 -31.24633 -30.88978 -28.67685 -28.20610 -26.25680 -24.41171 -22.86447 -22.63030 -21.60486 -19.21098 -18.74466 -17.19499 -17.00642 -16.31720 -15.87249 -15.71705 -15.58261 -15.18394 -14.78788 -14.53441 -14.39050 -13.88687 -13.77643 -13.59207 -13.36342 -13.24111 -12.85786 -12.72903 -12.68092 -12.53070 -12.43158 -12.38293 -12.03371 -11.82810 -11.58989 -11.39140 -11.20728 -11.01109 -9.55142 -9.35738 -9.33190 -9.11130 -8.60166 -6.32776 0.95361 1.16813 1.27910 1.38189 1.50550 1.53704 2.21558 2.71330 3.42360 3.82290 3.95158 4.13799 4.20034 4.28944 4.34929 4.44899 4.52734 4.58582 4.66767 4.67798 4.70938 4.82100 4.84880 4.87550 4.96503 5.08398 5.11257 5.13202 5.17383 5.18921 5.30593 5.41457 5.48850 5.73121 5.81187 5.95559 6.04893 6.12504 6.19750 6.30804 6.40774 6.53641 6.73423 6.96173 7.06268 8.35703 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.042966 B = 0.002942 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.524688 B = 9515.929640 C = 9592.102898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.140 4.140 3 C -0.116 4.116 4 C -0.173 4.173 5 C -0.086 4.086 6 C 0.069 3.931 7 N -0.698 5.698 8 C 0.131 3.869 9 C -0.200 4.200 10 C -0.088 4.088 11 C -0.191 4.191 12 C 0.076 3.924 13 C -0.500 4.500 14 H 0.074 0.926 15 C 0.031 3.969 16 N -0.828 5.828 17 Si 0.984 3.016 18 H -0.258 1.258 19 H -0.264 1.264 20 H -0.266 1.266 21 C -0.243 4.243 22 C -0.086 4.086 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.339 0.661 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.287 0.713 40 H 0.096 0.904 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 16.701 1.271 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C -0.172 4.172 4 C -0.191 4.191 5 C -0.124 4.124 6 C -0.059 4.059 7 N -0.329 5.329 8 C 0.003 3.997 9 C -0.201 4.201 10 C -0.107 4.107 11 C -0.211 4.211 12 C 0.074 3.926 13 C -0.530 4.530 14 H 0.092 0.908 15 C -0.183 4.183 16 N -0.454 5.454 17 Si 0.805 3.195 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.190 1.190 21 C -0.262 4.262 22 C -0.104 4.104 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.157 0.843 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.432 16.310 1.971 17.016 hybrid contribution -0.626 -0.578 -0.631 1.061 sum 3.806 15.732 1.340 16.241 Atomic orbital electron populations 1.20878 0.92123 1.02786 1.01917 1.21897 0.96339 0.95572 1.00190 1.20872 0.99705 0.94192 1.02453 1.22601 0.99736 0.93381 1.03390 1.20611 0.99586 0.93940 0.98250 1.21861 0.98518 0.88582 0.96980 1.60544 1.08341 1.18479 1.45510 1.20460 0.97560 0.90492 0.91168 1.19353 1.00087 0.95405 1.05284 1.20746 0.98671 0.93182 0.98061 1.21346 0.96890 0.97799 1.05065 1.17996 0.91088 0.92859 0.90638 1.19867 1.26045 1.01645 1.05419 0.90795 1.26792 0.93324 1.04739 0.93440 1.69891 1.35519 1.37106 1.02909 0.85134 0.78745 0.76024 0.79623 1.18183 1.18883 1.19047 1.21165 1.02234 0.93950 1.08872 1.20685 0.94860 0.96546 0.98321 0.91696 0.91053 0.91868 0.90985 0.91139 0.91641 0.86947 0.91172 0.91521 0.91302 0.95260 0.84323 0.94752 0.91399 0.88159 0.88091 0.90262 0.88585 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 8.56 71.23 0.61 -1.33 16 2 C -0.14 -2.43 6.05 -16.48 -0.10 -2.53 16 3 C -0.12 -1.53 9.97 71.24 0.71 -0.82 16 4 C -0.17 -3.34 9.11 25.65 0.23 -3.11 16 5 C -0.09 -1.93 5.71 29.85 0.17 -1.76 16 6 C 0.07 1.72 5.67 86.30 0.49 2.21 16 7 N -0.70 -21.75 6.49 -517.94 -3.36 -25.11 16 8 C 0.13 4.43 5.80 85.56 0.50 4.92 16 9 C -0.20 -8.53 5.42 -19.67 -0.11 -8.63 16 10 C -0.09 -4.21 9.67 22.22 0.21 -3.99 16 11 C -0.19 -10.47 8.70 22.73 0.20 -10.27 16 12 C 0.08 4.27 5.58 -21.29 -0.12 4.15 16 13 C -0.50 -27.81 9.07 23.46 0.21 -27.60 16 14 H 0.07 3.97 7.89 -2.91 -0.02 3.95 16 15 C 0.03 1.62 5.19 85.26 0.44 2.06 16 16 N -0.83 -44.72 10.83 21.83 0.24 -44.49 16 17 Si 0.98 39.19 29.59 68.60 2.03 41.22 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 21 C -0.24 -12.17 9.80 22.73 0.22 -11.95 16 22 C -0.09 -3.74 9.67 22.22 0.21 -3.52 16 23 H 0.06 1.07 8.03 -2.38 -0.02 1.05 16 24 H 0.07 0.93 7.93 -2.39 -0.02 0.91 16 25 H 0.06 1.06 7.47 -2.39 -0.02 1.04 16 26 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.07 0.79 8.04 -2.39 -0.02 0.77 16 28 H 0.06 0.81 8.04 -2.39 -0.02 0.79 16 29 H 0.11 2.02 8.02 -2.91 -0.02 2.00 16 30 H 0.07 1.53 5.84 -2.39 -0.01 1.51 16 31 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.34 10.56 8.72 -89.70 -0.78 9.77 16 35 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 36 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 37 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.10 5.80 6.08 -2.91 -0.02 5.78 16 39 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 40 H 0.10 4.56 8.06 -2.91 -0.02 4.53 16 41 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -59.68 339.43 3.00 -56.68 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.21 Total: 33.86 kcal Atomic # 6 Polarization: -66.05 SS G_CDS: 3.89 Total: -62.16 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -3.13 Total: -69.60 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -59.68 3.00 -56.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398997317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.564 kcal (2) G-P(sol) polarization free energy of solvation -59.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds