Wall clock time and date at job start Mon Mar 30 2020 06:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 112.90806 * 2 1 4 4 C 1.53786 * 113.61524 * 228.74941 * 2 1 3 5 5 C 1.53780 * 87.07974 * 270.88165 * 4 2 1 6 6 C 1.53781 * 87.08357 * 334.56680 * 5 4 2 7 7 H 1.08998 * 113.61136 * 270.80017 * 6 5 4 8 8 N 1.46895 * 113.61385 * 139.98264 * 6 5 4 9 9 C 1.46896 * 111.00104 * 104.50798 * 8 6 5 10 10 C 1.50708 * 109.47163 * 180.02562 * 9 8 6 11 11 C 1.38629 * 119.75158 * 89.99614 * 10 9 8 12 12 C 1.37616 * 120.24685 * 179.97438 * 11 10 9 13 13 C 1.40714 * 119.74604 * 0.02562 * 12 11 10 14 14 C 1.41395 * 120.24112 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99568 * 155.58334 * 14 13 12 16 16 C 1.39946 * 120.00621 * 335.31228 * 14 13 12 17 17 N 1.30823 * 119.99390 * 342.55986 * 16 14 13 18 18 Si 1.86793 * 120.00145 * 162.56213 * 16 14 13 19 19 H 1.48504 * 109.47123 * 90.00063 * 18 16 14 20 20 H 1.48504 * 109.46771 * 209.99514 * 18 16 14 21 21 H 1.48495 * 109.47393 * 329.99926 * 18 16 14 22 22 C 1.40707 * 119.51119 * 0.26996 * 13 12 11 23 23 C 1.37627 * 119.74628 * 359.42829 * 22 13 12 24 24 H 1.09000 * 109.47361 * 288.74838 * 1 2 3 25 25 H 1.09000 * 109.47385 * 48.74889 * 1 2 3 26 26 H 1.09002 * 109.47202 * 168.75264 * 1 2 3 27 27 H 1.09004 * 109.46989 * 191.25488 * 3 2 1 28 28 H 1.09006 * 109.46848 * 311.25224 * 3 2 1 29 29 H 1.08991 * 109.46882 * 71.24994 * 3 2 1 30 30 H 1.08996 * 113.61444 * 156.33043 * 4 2 1 31 31 H 1.09005 * 113.68725 * 25.43969 * 4 2 1 32 32 H 1.09001 * 113.61224 * 220.01394 * 5 4 2 33 33 H 1.09002 * 113.69062 * 89.12598 * 5 4 2 34 34 H 1.00901 * 111.00020 * 340.54806 * 8 6 5 35 35 H 1.08994 * 109.47668 * 59.99387 * 9 8 6 36 36 H 1.08998 * 109.46657 * 299.99445 * 9 8 6 37 37 H 1.07999 * 119.87506 * 0.02562 * 11 10 9 38 38 H 1.08001 * 120.12717 * 180.02562 * 12 11 10 39 39 H 0.97002 * 119.99788 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.12688 * 179.69910 * 22 13 12 41 41 H 1.07997 * 119.87502 * 180.31601 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1460 -0.9291 -1.0594 5 6 2.0929 -2.0425 0.0000 6 6 2.1460 -0.9291 1.0594 7 1 3.1590 -0.6509 1.3500 8 7 1.2680 -1.1711 2.2119 9 6 2.0437 -1.5975 3.3842 10 6 1.1113 -1.8364 4.5438 11 6 0.5620 -3.0944 4.7370 12 6 -0.2903 -3.3241 5.7928 13 6 -0.6039 -2.2758 6.6777 14 6 -1.4788 -2.5000 7.7656 15 1 -1.4242 -1.8698 8.6411 16 6 -2.4192 -3.5347 7.7058 17 7 -2.7315 -4.0687 6.5531 18 14 -3.2283 -4.1530 9.2717 19 1 -4.4677 -3.3762 9.5285 20 1 -3.5680 -5.5906 9.1189 21 1 -2.2929 -3.9838 10.4125 22 6 -0.0454 -1.0015 6.4682 23 6 0.8094 -0.7962 5.4092 24 1 -0.3634 0.3303 0.9731 25 1 -0.3634 0.6776 -0.7726 26 1 -0.3634 -1.0079 -0.2004 27 1 3.1954 1.3517 -0.2006 28 1 1.6427 2.0078 -0.7727 29 1 1.9626 1.8726 0.9731 30 1 3.1590 -0.6498 -1.3490 31 1 1.4955 -1.1094 -1.9153 32 1 2.9717 -2.6874 -0.0001 33 1 1.1574 -2.6019 0.0010 34 1 0.5530 -1.8463 1.9863 35 1 2.7605 -0.8199 3.6481 36 1 2.5769 -2.5192 3.1514 37 1 0.8044 -3.8975 4.0568 38 1 -0.7168 -4.3050 5.9418 39 1 -3.3830 -4.7862 6.5116 40 1 -0.2832 -0.1886 7.1383 41 1 1.2433 0.1798 5.2495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399003482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:26 Heat of formation + Delta-G solvation = 20.206968 kcal Electronic energy + Delta-G solvation = -18877.889926 eV Core-core repulsion = 16142.974589 eV Total energy + Delta-G solvation = -2734.915337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.80923 -37.59800 -34.56848 -33.12536 -30.54569 -29.75008 -29.19317 -27.33103 -26.46408 -23.99812 -22.60330 -22.26258 -20.95084 -19.85262 -18.16851 -17.26027 -15.57376 -15.37850 -15.13270 -14.47904 -14.19738 -13.99620 -13.59387 -13.43210 -13.14394 -12.70890 -12.44740 -12.11275 -11.92029 -11.88631 -11.80331 -11.62200 -11.44516 -11.25415 -10.98259 -10.91378 -10.74624 -10.51389 -10.31846 -10.07534 -9.97829 -9.46570 -9.35384 -9.10055 -7.87451 -7.41091 -7.25136 -6.73696 -4.32217 2.77113 3.07624 3.10979 3.12503 3.21103 3.94691 4.46246 4.58696 4.67834 4.77107 4.83883 5.13151 5.34743 5.55359 5.61347 5.68499 5.75369 5.78413 5.83339 5.89297 5.93314 5.98319 6.00147 6.08835 6.18622 6.31994 6.35885 6.41445 6.45530 6.49893 6.63900 6.97820 7.10303 7.31425 7.41595 7.54594 7.65051 7.84097 7.93989 8.08566 8.18516 8.34006 8.67214 8.92699 9.01293 10.20776 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037541 B = 0.003861 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.671123 B = 7250.261830 C = 7386.277674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.132 4.132 4 C -0.134 4.134 5 C -0.172 4.172 6 C 0.075 3.925 7 H 0.090 0.910 8 N -0.670 5.670 9 C 0.125 3.875 10 C -0.213 4.213 11 C -0.096 4.096 12 C -0.166 4.166 13 C 0.112 3.888 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.228 4.228 23 C -0.069 4.069 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.342 0.658 35 H 0.059 0.941 36 H 0.017 0.983 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.279 0.721 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.507 3.464 -10.924 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.190 4.190 4 C -0.172 4.172 5 C -0.211 4.211 6 C -0.036 4.036 7 H 0.108 0.892 8 N -0.300 5.300 9 C -0.003 4.003 10 C -0.214 4.214 11 C -0.115 4.115 12 C -0.185 4.185 13 C 0.110 3.890 14 C -0.494 4.494 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.419 5.419 18 Si 0.730 3.270 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.248 4.248 23 C -0.088 4.088 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.162 0.838 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.329 3.947 -10.815 13.138 hybrid contribution -0.263 -1.284 0.319 1.349 sum 6.066 2.663 -10.496 12.412 Atomic orbital electron populations 1.21446 0.92891 1.01089 1.02454 1.21978 0.96193 0.94238 0.95310 1.21692 0.99634 0.95841 1.01809 1.22931 1.00667 0.96967 0.96661 1.23636 1.01866 0.97252 0.98378 1.23110 0.96429 0.94951 0.89109 0.89158 1.60513 1.14211 1.51521 1.03722 1.20571 0.94055 0.96836 0.88840 1.18927 1.07787 0.94863 0.99836 1.20518 0.98158 0.94966 0.97839 1.21268 1.00286 0.99584 0.97371 1.17611 0.89630 0.90222 0.91582 1.19589 1.14512 1.12873 1.02409 0.90546 1.25896 0.95937 0.95186 0.97088 1.69833 1.26016 1.20663 1.25414 0.86352 0.79718 0.78406 0.82477 1.19522 1.20135 1.18488 1.20983 1.06086 0.96588 1.01118 1.20333 0.97469 0.96102 0.94903 0.90752 0.93466 0.93102 0.93186 0.93113 0.92168 0.90561 0.91680 0.92052 0.90096 0.83815 0.92245 0.96458 0.89997 0.86601 0.90969 0.89167 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.37 37.15 0.31 -1.19 16 2 C -0.08 -0.90 1.37 -153.69 -0.21 -1.11 16 3 C -0.13 -1.44 9.20 37.16 0.34 -1.10 16 4 C -0.13 -1.40 7.19 -25.92 -0.19 -1.59 16 5 C -0.17 -2.00 7.36 -25.92 -0.19 -2.19 16 6 C 0.08 0.98 3.60 -66.90 -0.24 0.74 16 7 H 0.09 1.17 7.85 -51.93 -0.41 0.77 16 8 N -0.67 -10.72 5.57 -107.14 -0.60 -11.32 16 9 C 0.12 2.20 5.66 -4.97 -0.03 2.17 16 10 C -0.21 -4.61 5.41 -104.33 -0.56 -5.17 16 11 C -0.10 -2.23 9.67 -39.66 -0.38 -2.61 16 12 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 13 C 0.11 3.02 5.57 -106.83 -0.60 2.42 16 14 C -0.46 -12.46 9.05 -37.74 -0.34 -12.80 16 15 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 16 C 0.08 1.93 5.15 -17.34 -0.09 1.85 16 17 N -0.79 -20.66 10.95 55.55 0.61 -20.06 16 18 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 22 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 23 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 24 H 0.07 1.06 7.77 -51.93 -0.40 0.66 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.62 7.34 -51.93 -0.38 0.24 16 27 H 0.05 0.49 7.94 -51.93 -0.41 0.08 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 31 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.98 7.34 -51.93 -0.38 0.59 16 34 H 0.34 5.69 8.04 -39.29 -0.32 5.37 16 35 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 36 H 0.02 0.29 8.08 -51.93 -0.42 -0.12 16 37 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 39 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 40 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -26.60 330.81 -10.12 -36.72 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.81 Total: 9.22 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: -3.28 Total: -33.28 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.01 Total: -31.37 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.60 -10.12 -36.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399003482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.926 kcal (2) G-P(sol) polarization free energy of solvation -26.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds