Wall clock time and date at job start Mon Mar 30 2020 06:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 112.90806 * 2 1 4 4 C 1.53786 * 113.61524 * 228.74941 * 2 1 3 5 5 C 1.53780 * 87.07974 * 270.88165 * 4 2 1 6 6 C 1.53781 * 87.08357 * 334.56680 * 5 4 2 7 7 H 1.08998 * 113.61136 * 270.80017 * 6 5 4 8 8 N 1.46895 * 113.61385 * 139.98264 * 6 5 4 9 9 C 1.46896 * 111.00104 * 104.50798 * 8 6 5 10 10 C 1.50708 * 109.47163 * 180.02562 * 9 8 6 11 11 C 1.38629 * 119.75158 * 89.99614 * 10 9 8 12 12 C 1.37616 * 120.24685 * 179.97438 * 11 10 9 13 13 C 1.40714 * 119.74604 * 0.02562 * 12 11 10 14 14 C 1.41395 * 120.24112 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99568 * 155.58334 * 14 13 12 16 16 C 1.39946 * 120.00621 * 335.31228 * 14 13 12 17 17 N 1.30823 * 119.99390 * 342.55986 * 16 14 13 18 18 Si 1.86793 * 120.00145 * 162.56213 * 16 14 13 19 19 H 1.48504 * 109.47123 * 90.00063 * 18 16 14 20 20 H 1.48504 * 109.46771 * 209.99514 * 18 16 14 21 21 H 1.48495 * 109.47393 * 329.99926 * 18 16 14 22 22 C 1.40707 * 119.51119 * 0.26996 * 13 12 11 23 23 C 1.37627 * 119.74628 * 359.42829 * 22 13 12 24 24 H 1.09000 * 109.47361 * 288.74838 * 1 2 3 25 25 H 1.09000 * 109.47385 * 48.74889 * 1 2 3 26 26 H 1.09002 * 109.47202 * 168.75264 * 1 2 3 27 27 H 1.09004 * 109.46989 * 191.25488 * 3 2 1 28 28 H 1.09006 * 109.46848 * 311.25224 * 3 2 1 29 29 H 1.08991 * 109.46882 * 71.24994 * 3 2 1 30 30 H 1.08996 * 113.61444 * 156.33043 * 4 2 1 31 31 H 1.09005 * 113.68725 * 25.43969 * 4 2 1 32 32 H 1.09001 * 113.61224 * 220.01394 * 5 4 2 33 33 H 1.09002 * 113.69062 * 89.12598 * 5 4 2 34 34 H 1.00901 * 111.00020 * 340.54806 * 8 6 5 35 35 H 1.08994 * 109.47668 * 59.99387 * 9 8 6 36 36 H 1.08998 * 109.46657 * 299.99445 * 9 8 6 37 37 H 1.07999 * 119.87506 * 0.02562 * 11 10 9 38 38 H 1.08001 * 120.12717 * 180.02562 * 12 11 10 39 39 H 0.97002 * 119.99788 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.12688 * 179.69910 * 22 13 12 41 41 H 1.07997 * 119.87502 * 180.31601 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4094 0.0000 4 6 2.1460 -0.9291 -1.0594 5 6 2.0929 -2.0425 0.0000 6 6 2.1460 -0.9291 1.0594 7 1 3.1590 -0.6509 1.3500 8 7 1.2680 -1.1711 2.2119 9 6 2.0437 -1.5975 3.3842 10 6 1.1113 -1.8364 4.5438 11 6 0.5620 -3.0944 4.7370 12 6 -0.2903 -3.3241 5.7928 13 6 -0.6039 -2.2758 6.6777 14 6 -1.4788 -2.5000 7.7656 15 1 -1.4242 -1.8698 8.6411 16 6 -2.4192 -3.5347 7.7058 17 7 -2.7315 -4.0687 6.5531 18 14 -3.2283 -4.1530 9.2717 19 1 -4.4677 -3.3762 9.5285 20 1 -3.5680 -5.5906 9.1189 21 1 -2.2929 -3.9838 10.4125 22 6 -0.0454 -1.0015 6.4682 23 6 0.8094 -0.7962 5.4092 24 1 -0.3634 0.3303 0.9731 25 1 -0.3634 0.6776 -0.7726 26 1 -0.3634 -1.0079 -0.2004 27 1 3.1954 1.3517 -0.2006 28 1 1.6427 2.0078 -0.7727 29 1 1.9626 1.8726 0.9731 30 1 3.1590 -0.6498 -1.3490 31 1 1.4955 -1.1094 -1.9153 32 1 2.9717 -2.6874 -0.0001 33 1 1.1574 -2.6019 0.0010 34 1 0.5530 -1.8463 1.9863 35 1 2.7605 -0.8199 3.6481 36 1 2.5769 -2.5192 3.1514 37 1 0.8044 -3.8975 4.0568 38 1 -0.7168 -4.3050 5.9418 39 1 -3.3830 -4.7862 6.5116 40 1 -0.2832 -0.1886 7.1383 41 1 1.2433 0.1798 5.2495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399003482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:26 Heat of formation + Delta-G solvation = 7.736724 kcal Electronic energy + Delta-G solvation = -18878.430676 eV Core-core repulsion = 16142.974589 eV Total energy + Delta-G solvation = -2735.456087 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80357 -39.42445 -36.19931 -34.76400 -31.84360 -31.21664 -31.02184 -28.34117 -28.05155 -25.44221 -23.85338 -23.26861 -22.85170 -21.62997 -19.22453 -19.16566 -17.21810 -16.58867 -16.40062 -15.92424 -15.65845 -15.39399 -15.11152 -14.90377 -14.24540 -14.06531 -13.82151 -13.76607 -13.46386 -13.12844 -13.05132 -12.86582 -12.81533 -12.62606 -12.43678 -12.35228 -12.20162 -12.03654 -11.55318 -11.40284 -11.26886 -11.03067 -10.97839 -10.79201 -9.36486 -9.21661 -9.01850 -8.62316 -6.31984 0.96523 1.17473 1.37826 1.48568 1.54415 2.21375 2.70985 3.42641 3.66224 3.76906 3.84631 3.90925 4.08249 4.33331 4.37937 4.45981 4.62239 4.64561 4.67482 4.74454 4.80310 4.85981 4.92498 4.95547 5.06291 5.07276 5.08130 5.17675 5.20005 5.29128 5.37305 5.39541 5.49844 5.58435 5.66105 5.73205 5.98471 6.12022 6.25805 6.35987 6.42193 6.58078 6.72445 6.96129 7.06284 8.34550 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037541 B = 0.003861 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.671123 B = 7250.261830 C = 7386.277674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.078 4.078 3 C -0.130 4.130 4 C -0.122 4.122 5 C -0.169 4.169 6 C 0.068 3.932 7 H 0.096 0.904 8 N -0.678 5.678 9 C 0.133 3.867 10 C -0.198 4.198 11 C -0.098 4.098 12 C -0.189 4.189 13 C 0.079 3.921 14 C -0.505 4.505 15 H 0.073 0.927 16 C 0.036 3.964 17 N -0.826 5.826 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.260 1.260 22 C -0.245 4.245 23 C -0.073 4.073 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.337 0.663 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.287 0.713 40 H 0.093 0.907 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.514 3.706 -12.299 14.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.079 4.079 3 C -0.188 4.188 4 C -0.160 4.160 5 C -0.209 4.209 6 C -0.042 4.042 7 H 0.114 0.886 8 N -0.307 5.307 9 C 0.005 3.995 10 C -0.200 4.200 11 C -0.117 4.117 12 C -0.209 4.209 13 C 0.077 3.923 14 C -0.535 4.535 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.184 1.184 22 C -0.265 4.265 23 C -0.092 4.092 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.351 4.204 -12.211 14.860 hybrid contribution -0.489 -1.287 0.613 1.507 sum 6.862 2.917 -11.598 13.788 Atomic orbital electron populations 1.21409 0.93622 1.01179 1.01483 1.21998 0.95660 0.94909 0.95340 1.21678 1.00545 0.95188 1.01353 1.22890 1.01540 0.95357 0.96181 1.23586 1.01870 0.97255 0.98157 1.23270 0.96222 0.96358 0.88393 0.88626 1.60454 1.14612 1.51194 1.04428 1.20473 0.93229 0.97844 0.88001 1.19369 1.06594 0.93698 1.00326 1.20766 0.97361 0.96398 0.97201 1.21243 1.01874 0.98868 0.98888 1.17950 0.90662 0.91255 0.92442 1.19836 1.16105 1.14743 1.02788 0.90914 1.26739 0.96012 0.94679 1.00452 1.69884 1.26745 1.21213 1.27411 0.85226 0.78604 0.78166 0.77829 1.18690 1.18956 1.18351 1.21181 1.06930 0.96179 1.02186 1.20635 0.96829 0.97555 0.94177 0.93162 0.92156 0.93323 0.91876 0.92130 0.93629 0.89015 0.90894 0.91344 0.90772 0.84411 0.91115 0.95429 0.87945 0.88338 0.90227 0.88901 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.78 8.37 71.98 0.60 -2.18 16 2 C -0.08 -1.65 1.37 -51.65 -0.07 -1.72 16 3 C -0.13 -2.50 9.20 71.98 0.66 -1.84 16 4 C -0.12 -2.15 7.19 31.12 0.22 -1.92 16 5 C -0.17 -3.50 7.36 31.12 0.23 -3.28 16 6 C 0.07 1.61 3.60 45.44 0.16 1.78 16 7 H 0.10 2.20 7.85 -2.39 -0.02 2.18 16 8 N -0.68 -20.54 5.57 -492.87 -2.74 -23.28 16 9 C 0.13 4.39 5.66 85.56 0.48 4.88 16 10 C -0.20 -8.41 5.41 -19.67 -0.11 -8.52 16 11 C -0.10 -4.57 9.67 22.22 0.21 -4.36 16 12 C -0.19 -10.18 8.70 22.73 0.20 -9.98 16 13 C 0.08 4.42 5.57 -21.29 -0.12 4.30 16 14 C -0.51 -28.18 9.05 23.46 0.21 -27.97 16 15 H 0.07 3.93 7.91 -2.91 -0.02 3.90 16 16 C 0.04 1.85 5.15 85.26 0.44 2.29 16 17 N -0.83 -44.23 10.95 21.83 0.24 -43.99 16 18 Si 0.98 39.04 29.59 68.60 2.03 41.07 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 20 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 C -0.25 -12.52 9.80 22.73 0.22 -12.29 16 23 C -0.07 -3.30 9.67 22.22 0.21 -3.09 16 24 H 0.05 1.40 7.77 -2.39 -0.02 1.39 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.13 7.34 -2.39 -0.02 1.11 16 27 H 0.06 1.04 7.94 -2.38 -0.02 1.02 16 28 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.37 7.96 -2.39 -0.02 1.35 16 31 H 0.07 1.20 8.10 -2.38 -0.02 1.18 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.65 7.34 -2.39 -0.02 1.63 16 34 H 0.34 10.82 8.04 -89.69 -0.72 10.10 16 35 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 36 H 0.03 0.87 8.08 -2.39 -0.02 0.85 16 37 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.10 5.55 6.16 -2.91 -0.02 5.54 16 39 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 40 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 41 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -58.39 330.81 3.37 -55.02 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.27 Total: 35.09 kcal Atomic # 6 Polarization: -67.47 SS G_CDS: 3.57 Total: -63.90 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -2.50 Total: -67.27 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -58.39 3.37 -55.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399003482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.753 kcal (2) G-P(sol) polarization free energy of solvation -58.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds