Wall clock time and date at job start Mon Mar 30 2020 06:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47178 * 2 1 4 4 C 1.52997 * 113.25629 * 312.94766 * 3 2 1 5 5 C 1.53511 * 114.17017 * 179.97438 * 3 2 1 6 6 N 1.47479 * 87.93456 * 220.14256 * 5 3 2 7 7 C 1.46894 * 111.00632 * 138.70350 * 6 5 3 8 8 C 1.50697 * 109.47543 * 170.00217 * 7 6 5 9 9 C 1.38642 * 119.74493 * 269.72955 * 8 7 6 10 10 C 1.37613 * 120.24269 * 179.72060 * 9 8 7 11 11 C 1.40717 * 119.75158 * 0.52452 * 10 9 8 12 12 C 1.41390 * 120.25026 * 179.72771 * 11 10 9 13 13 H 1.07999 * 120.00191 * 24.40829 * 12 11 10 14 14 C 1.39945 * 120.00192 * 204.41241 * 12 11 10 15 15 N 1.30827 * 119.99789 * 17.85147 * 14 12 11 16 16 Si 1.86802 * 120.00220 * 197.85553 * 14 12 11 17 17 H 1.48497 * 109.46867 * 89.99551 * 16 14 12 18 18 H 1.48495 * 109.46979 * 210.00192 * 16 14 12 19 19 H 1.48506 * 109.46850 * 330.00050 * 16 14 12 20 20 C 1.40717 * 119.50544 * 359.74555 * 11 10 9 21 21 C 1.37622 * 119.74789 * 0.02562 * 20 11 10 22 22 C 1.47483 * 87.83332 * 27.00974 * 6 5 3 23 23 H 1.09001 * 109.47004 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47229 * 300.00089 * 1 2 3 25 25 H 1.09004 * 109.46468 * 60.00291 * 1 2 3 26 26 H 1.09003 * 109.47387 * 239.99649 * 2 1 3 27 27 H 1.09000 * 109.47122 * 120.00022 * 2 1 3 28 28 H 1.08997 * 109.47132 * 287.05048 * 4 3 2 29 29 H 1.09000 * 109.47015 * 47.04959 * 4 3 2 30 30 H 1.09002 * 109.46683 * 167.04890 * 4 3 2 31 31 H 1.08998 * 113.48027 * 105.37603 * 5 3 2 32 32 H 1.09007 * 113.47536 * 334.90563 * 5 3 2 33 33 H 1.09002 * 109.46834 * 290.00237 * 7 6 5 34 34 H 1.09003 * 109.47128 * 50.00075 * 7 6 5 35 35 H 1.07998 * 119.87705 * 359.97438 * 9 8 7 36 36 H 1.08004 * 120.12811 * 180.27432 * 10 9 8 37 37 H 0.97003 * 119.99776 * 180.02562 * 15 14 12 38 38 H 1.08002 * 120.12732 * 179.97438 * 20 11 10 39 39 H 1.07996 * 119.87413 * 179.97438 * 21 20 11 40 40 H 1.08998 * 113.47698 * 87.76127 * 22 6 5 41 41 H 1.08998 * 113.47710 * 218.22305 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3385 2.3313 -1.0289 5 6 3.5700 1.5683 0.0006 6 7 3.4243 2.6869 0.9506 7 6 4.4436 2.6176 2.0060 8 6 4.4235 3.8929 2.8085 9 6 5.2269 4.9572 2.4291 10 6 5.2123 6.1286 3.1512 11 6 4.3860 6.2399 4.2848 12 6 4.3671 7.4365 5.0377 13 1 4.6459 8.3710 4.5736 14 6 3.9871 7.4100 6.3843 15 7 3.9877 6.2791 7.0420 16 14 3.4788 8.9894 7.2426 17 1 2.0148 9.1863 7.0905 18 1 3.8191 8.9003 8.6853 19 1 4.1985 10.1371 6.6342 20 6 3.5790 5.1512 4.6637 21 6 3.6061 3.9910 3.9240 22 6 2.1602 2.0711 1.3953 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6812 2.0687 -2.0297 29 1 0.2607 2.1822 -0.9631 30 1 1.5737 3.3763 -0.8268 31 1 3.9815 1.8679 -0.9632 32 1 4.0767 0.7015 0.4250 33 1 4.2313 1.7727 2.6611 34 1 5.4269 2.4885 1.5536 35 1 5.8636 4.8680 1.5613 36 1 5.8357 6.9580 2.8514 37 1 3.7240 6.2607 7.9753 38 1 2.9413 5.2255 5.5322 39 1 2.9879 3.1540 4.2132 40 1 2.2906 1.3386 2.1919 41 1 1.3768 2.7969 1.6135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399012063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:52 Heat of formation + Delta-G solvation = 37.074445 kcal Electronic energy + Delta-G solvation = -18954.500821 eV Core-core repulsion = 16220.316913 eV Total energy + Delta-G solvation = -2734.183908 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -40.39704 -37.45146 -34.52648 -33.48336 -30.93075 -29.27089 -28.98556 -27.14550 -25.79703 -25.18927 -23.50215 -21.38083 -20.87397 -19.72427 -18.17054 -17.24259 -15.68021 -15.33988 -15.25767 -14.96980 -14.30779 -14.00472 -13.64868 -13.58499 -13.00814 -12.87659 -12.52187 -12.32769 -11.94646 -11.87213 -11.79248 -11.60909 -11.39151 -11.14014 -10.99335 -10.83724 -10.76918 -10.46926 -10.37420 -10.10453 -9.98003 -9.52092 -9.32974 -9.08007 -8.43724 -7.38954 -7.23472 -6.72057 -4.29909 2.78852 3.08896 3.12903 3.14257 3.22477 3.96196 4.34470 4.36816 4.69610 4.77260 5.05591 5.22184 5.29948 5.43303 5.46157 5.58202 5.63458 5.76747 5.80814 5.84200 5.86321 5.90290 5.96986 6.07304 6.13106 6.18933 6.20252 6.32568 6.40912 6.43372 6.52156 6.72255 7.00452 7.12206 7.34666 7.42947 7.48117 7.67348 7.94080 8.10815 8.19676 8.35755 8.69415 8.94826 9.03546 10.22687 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.004029 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.481346 B = 6947.263646 C = 7257.427340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.092 4.092 4 C -0.123 4.123 5 C -0.001 4.001 6 N -0.457 5.457 7 C 0.084 3.916 8 C -0.200 4.200 9 C -0.073 4.073 10 C -0.227 4.227 11 C 0.111 3.889 12 C -0.465 4.465 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.795 5.795 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.262 1.262 20 C -0.166 4.166 21 C -0.092 4.092 22 C 0.013 3.987 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.279 0.721 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 -9.873 -9.633 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.092 4.092 4 C -0.180 4.180 5 C -0.130 4.130 6 N -0.179 5.179 7 C -0.043 4.043 8 C -0.202 4.202 9 C -0.092 4.092 10 C -0.247 4.247 11 C 0.109 3.891 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.141 4.141 15 N -0.421 5.421 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.185 4.185 21 C -0.111 4.111 22 C -0.116 4.116 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.826 -9.261 -9.593 14.181 hybrid contribution -0.026 -0.172 0.984 0.999 sum -4.852 -9.433 -8.609 13.662 Atomic orbital electron populations 1.21814 0.95794 1.01147 1.02190 1.21443 0.96105 0.95292 1.01643 1.22042 0.95319 0.95122 0.96754 1.21540 0.99574 0.99930 0.96983 1.23927 0.95639 0.94422 0.98981 1.69075 1.02980 1.34765 1.11067 1.21306 0.94907 0.95982 0.92078 1.18775 1.06193 0.95714 0.99524 1.20309 0.98023 0.93506 0.97384 1.20955 1.04676 0.97433 1.01612 1.17608 0.88315 0.92757 0.90424 1.19597 1.40227 0.95039 0.94571 0.90522 1.25897 0.92820 0.97583 0.97789 1.69838 1.34611 1.27420 1.10222 0.86336 0.79904 0.82336 0.78267 1.19308 1.20380 1.18643 1.21271 1.02102 0.93816 1.01301 1.20472 0.98265 0.97015 0.95360 1.23923 0.95263 0.97308 0.95117 0.93187 0.92560 0.92268 0.91989 0.92138 0.92858 0.92246 0.91325 0.90378 0.92096 0.94753 0.92017 0.89691 0.89166 0.90996 0.86601 0.90105 0.91932 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.27 37.16 0.34 -1.02 16 2 C -0.11 -1.05 5.59 -26.73 -0.15 -1.20 16 3 C -0.09 -1.09 1.17 -153.98 -0.18 -1.27 16 4 C -0.12 -1.40 8.88 37.16 0.33 -1.07 16 5 C 0.00 -0.01 6.84 -7.55 -0.05 -0.06 16 6 N -0.46 -7.61 6.12 -246.06 -1.51 -9.11 16 7 C 0.08 1.54 4.93 -4.98 -0.02 1.52 16 8 C -0.20 -4.50 5.49 -104.33 -0.57 -5.07 16 9 C -0.07 -1.71 9.67 -39.66 -0.38 -2.10 16 10 C -0.23 -5.78 9.80 -38.87 -0.38 -6.16 16 11 C 0.11 3.05 5.58 -106.83 -0.60 2.46 16 12 C -0.46 -12.64 9.05 -37.74 -0.34 -12.98 16 13 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 14 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 15 N -0.80 -20.93 10.95 55.55 0.61 -20.32 16 16 Si 0.91 19.00 29.60 -169.99 -5.03 13.97 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 21 C -0.09 -2.20 9.67 -39.66 -0.38 -2.59 16 22 C 0.01 0.19 6.82 -7.55 -0.05 0.14 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.50 6.35 -51.93 -0.33 0.17 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.60 5.96 -51.93 -0.31 0.29 16 30 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 31 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 32 H 0.06 0.75 7.87 -51.93 -0.41 0.34 16 33 H 0.03 0.60 7.24 -51.93 -0.38 0.22 16 34 H 0.06 1.07 8.02 -51.93 -0.42 0.65 16 35 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 37 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 38 H 0.12 3.18 6.16 -52.49 -0.32 2.86 16 39 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.06 0.90 7.22 -51.93 -0.38 0.53 16 41 H 0.08 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -27.79 328.41 -10.56 -38.35 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.71 Total: 4.45 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: -2.87 Total: -32.28 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: -0.90 Total: -29.43 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.79 -10.56 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399012063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.422 kcal (2) G-P(sol) polarization free energy of solvation -27.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds