Wall clock time and date at job start Mon Mar 30 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47178 * 2 1 4 4 C 1.52997 * 113.25629 * 312.94766 * 3 2 1 5 5 C 1.53511 * 114.17017 * 179.97438 * 3 2 1 6 6 N 1.47479 * 87.93456 * 220.14256 * 5 3 2 7 7 C 1.46894 * 111.00632 * 138.70350 * 6 5 3 8 8 C 1.50697 * 109.47543 * 170.00217 * 7 6 5 9 9 C 1.38642 * 119.74493 * 269.72955 * 8 7 6 10 10 C 1.37613 * 120.24269 * 179.72060 * 9 8 7 11 11 C 1.40717 * 119.75158 * 0.52452 * 10 9 8 12 12 C 1.41390 * 120.25026 * 179.72771 * 11 10 9 13 13 H 1.07999 * 120.00191 * 24.40829 * 12 11 10 14 14 C 1.39945 * 120.00192 * 204.41241 * 12 11 10 15 15 N 1.30827 * 119.99789 * 17.85147 * 14 12 11 16 16 Si 1.86802 * 120.00220 * 197.85553 * 14 12 11 17 17 H 1.48497 * 109.46867 * 89.99551 * 16 14 12 18 18 H 1.48495 * 109.46979 * 210.00192 * 16 14 12 19 19 H 1.48506 * 109.46850 * 330.00050 * 16 14 12 20 20 C 1.40717 * 119.50544 * 359.74555 * 11 10 9 21 21 C 1.37622 * 119.74789 * 0.02562 * 20 11 10 22 22 C 1.47483 * 87.83332 * 27.00974 * 6 5 3 23 23 H 1.09001 * 109.47004 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47229 * 300.00089 * 1 2 3 25 25 H 1.09004 * 109.46468 * 60.00291 * 1 2 3 26 26 H 1.09003 * 109.47387 * 239.99649 * 2 1 3 27 27 H 1.09000 * 109.47122 * 120.00022 * 2 1 3 28 28 H 1.08997 * 109.47132 * 287.05048 * 4 3 2 29 29 H 1.09000 * 109.47015 * 47.04959 * 4 3 2 30 30 H 1.09002 * 109.46683 * 167.04890 * 4 3 2 31 31 H 1.08998 * 113.48027 * 105.37603 * 5 3 2 32 32 H 1.09007 * 113.47536 * 334.90563 * 5 3 2 33 33 H 1.09002 * 109.46834 * 290.00237 * 7 6 5 34 34 H 1.09003 * 109.47128 * 50.00075 * 7 6 5 35 35 H 1.07998 * 119.87705 * 359.97438 * 9 8 7 36 36 H 1.08004 * 120.12811 * 180.27432 * 10 9 8 37 37 H 0.97003 * 119.99776 * 180.02562 * 15 14 12 38 38 H 1.08002 * 120.12732 * 179.97438 * 20 11 10 39 39 H 1.07996 * 119.87413 * 179.97438 * 21 20 11 40 40 H 1.08998 * 113.47698 * 87.76127 * 22 6 5 41 41 H 1.08998 * 113.47710 * 218.22305 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3385 2.3313 -1.0289 5 6 3.5700 1.5683 0.0006 6 7 3.4243 2.6869 0.9506 7 6 4.4436 2.6176 2.0060 8 6 4.4235 3.8929 2.8085 9 6 5.2269 4.9572 2.4291 10 6 5.2123 6.1286 3.1512 11 6 4.3860 6.2399 4.2848 12 6 4.3671 7.4365 5.0377 13 1 4.6459 8.3710 4.5736 14 6 3.9871 7.4100 6.3843 15 7 3.9877 6.2791 7.0420 16 14 3.4788 8.9894 7.2426 17 1 2.0148 9.1863 7.0905 18 1 3.8191 8.9003 8.6853 19 1 4.1985 10.1371 6.6342 20 6 3.5790 5.1512 4.6637 21 6 3.6061 3.9910 3.9240 22 6 2.1602 2.0711 1.3953 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6812 2.0687 -2.0297 29 1 0.2607 2.1822 -0.9631 30 1 1.5737 3.3763 -0.8268 31 1 3.9815 1.8679 -0.9632 32 1 4.0767 0.7015 0.4250 33 1 4.2313 1.7727 2.6611 34 1 5.4269 2.4885 1.5536 35 1 5.8636 4.8680 1.5613 36 1 5.8357 6.9580 2.8514 37 1 3.7240 6.2607 7.9753 38 1 2.9413 5.2255 5.5322 39 1 2.9879 3.1540 4.2132 40 1 2.2906 1.3386 2.1919 41 1 1.3768 2.7969 1.6135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399012063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:51 Heat of formation + Delta-G solvation = 22.215169 kcal Electronic energy + Delta-G solvation = -18955.145167 eV Core-core repulsion = 16220.316913 eV Total energy + Delta-G solvation = -2734.828255 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53283 -39.32440 -36.00644 -34.96217 -32.50675 -31.18013 -30.27518 -28.55903 -26.90282 -26.58298 -24.85656 -22.89935 -22.57515 -21.43196 -19.22646 -19.15728 -17.24734 -16.75065 -16.49269 -16.22298 -15.77480 -15.50728 -15.20828 -14.93050 -14.32578 -14.06866 -13.95015 -13.81367 -13.57326 -13.20621 -13.09737 -12.81132 -12.77769 -12.65675 -12.41056 -12.39155 -11.97227 -11.92829 -11.56254 -11.44039 -11.29496 -11.16283 -10.97995 -10.95440 -9.68424 -9.34827 -9.18520 -8.63775 -6.32985 0.95245 1.15339 1.36788 1.50297 1.51282 2.20500 2.69143 3.26338 3.37549 3.76062 3.83047 4.10785 4.19689 4.26907 4.32455 4.46956 4.50434 4.54899 4.59164 4.64069 4.74181 4.80510 4.83750 4.84693 5.02763 5.06267 5.12641 5.14052 5.16180 5.22741 5.30651 5.33153 5.42856 5.47721 5.52329 5.64069 5.71753 5.96774 6.10509 6.23438 6.29229 6.39872 6.70615 6.94651 7.04625 8.33581 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.004029 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.481346 B = 6947.263646 C = 7257.427340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C -0.077 4.077 4 C -0.122 4.122 5 C 0.003 3.997 6 N -0.483 5.483 7 C 0.090 3.910 8 C -0.190 4.190 9 C -0.078 4.078 10 C -0.244 4.244 11 C 0.078 3.922 12 C -0.505 4.505 13 H 0.073 0.927 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.266 1.266 19 H -0.259 1.259 20 C -0.189 4.189 21 C -0.096 4.096 22 C 0.006 3.994 23 H 0.062 0.938 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.287 0.713 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 -11.222 -10.841 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.140 4.140 3 C -0.077 4.077 4 C -0.179 4.179 5 C -0.125 4.125 6 N -0.204 5.204 7 C -0.037 4.037 8 C -0.192 4.192 9 C -0.097 4.097 10 C -0.264 4.264 11 C 0.076 3.924 12 C -0.534 4.534 13 H 0.091 0.909 14 C -0.179 4.179 15 N -0.453 5.453 16 Si 0.803 3.197 17 H -0.187 1.187 18 H -0.191 1.191 19 H -0.182 1.182 20 C -0.209 4.209 21 C -0.115 4.115 22 C -0.123 4.123 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.197 -10.627 -10.819 16.031 hybrid contribution 0.102 0.129 1.253 1.264 sum -5.095 -10.497 -9.565 15.088 Atomic orbital electron populations 1.21813 0.95185 1.01963 1.01960 1.21425 0.96599 0.93576 1.02446 1.21990 0.94702 0.96365 0.94678 1.21537 1.00417 0.98289 0.97667 1.24000 0.96715 0.93518 0.98300 1.68979 1.03115 1.37131 1.11220 1.21234 0.96367 0.93687 0.92430 1.19264 1.03957 0.97166 0.98773 1.20629 0.98313 0.92926 0.97810 1.21166 1.04828 0.98658 1.01721 1.17950 0.89355 0.93458 0.91616 1.19833 1.42704 0.95003 0.95907 0.90906 1.26757 0.92019 1.01245 0.97883 1.69887 1.34991 1.29558 1.10904 0.85200 0.79482 0.77629 0.77353 1.18714 1.19053 1.18248 1.21243 1.02805 0.95104 1.01750 1.20702 0.98640 0.96630 0.95534 1.23989 0.94019 0.97075 0.97178 0.91897 0.93604 0.91717 0.90383 0.92114 0.91215 0.91092 0.93808 0.89634 0.90715 0.93818 0.90749 0.87102 0.88763 0.90199 0.88344 0.88370 0.91562 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.27 71.98 0.67 -1.64 16 2 C -0.10 -1.69 5.59 30.60 0.17 -1.52 16 3 C -0.08 -1.64 1.17 -51.84 -0.06 -1.70 16 4 C -0.12 -2.52 8.88 71.98 0.64 -1.88 16 5 C 0.00 0.08 6.84 83.57 0.57 0.65 16 6 N -0.48 -15.20 6.12 -932.39 -5.71 -20.91 16 7 C 0.09 3.12 4.93 85.56 0.42 3.54 16 8 C -0.19 -8.41 5.49 -19.68 -0.11 -8.52 16 9 C -0.08 -3.62 9.67 22.22 0.21 -3.41 16 10 C -0.24 -12.73 9.80 22.73 0.22 -12.50 16 11 C 0.08 4.47 5.58 -21.29 -0.12 4.35 16 12 C -0.50 -28.57 9.05 23.46 0.21 -28.36 16 13 H 0.07 3.99 7.91 -2.91 -0.02 3.97 16 14 C 0.04 1.85 5.14 85.26 0.44 2.29 16 15 N -0.83 -44.77 10.95 21.83 0.24 -44.53 16 16 Si 0.98 39.52 29.60 68.60 2.03 41.55 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 20 C -0.19 -10.47 8.70 22.73 0.20 -10.27 16 21 C -0.10 -4.65 9.67 22.22 0.21 -4.44 16 22 C 0.01 0.18 6.82 83.57 0.57 0.75 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.91 6.35 -2.38 -0.02 0.89 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.02 7.91 -2.39 -0.02 1.00 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.29 5.96 -2.39 -0.01 1.27 16 30 H 0.04 1.12 7.92 -2.39 -0.02 1.10 16 31 H 0.09 1.89 8.12 -2.39 -0.02 1.87 16 32 H 0.07 1.57 7.87 -2.38 -0.02 1.55 16 33 H 0.04 1.42 7.24 -2.39 -0.02 1.41 16 34 H 0.07 2.37 8.02 -2.39 -0.02 2.36 16 35 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.09 4.67 8.06 -2.91 -0.02 4.65 16 37 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 38 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 39 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.07 1.80 7.22 -2.39 -0.02 1.78 16 41 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 Total: -1.00 -61.44 328.41 1.80 -59.64 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.98 Total: 26.89 kcal Atomic # 6 Polarization: -66.91 SS G_CDS: 4.25 Total: -62.65 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -5.47 Total: -65.44 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -61.44 1.80 -59.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399012063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.857 kcal (2) G-P(sol) polarization free energy of solvation -61.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds