Wall clock time and date at job start Mon Mar 30 2020 06:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47304 * 2 1 4 4 C 1.53003 * 115.56289 * 325.69620 * 3 2 1 5 5 C 1.52999 * 117.49735 * 111.37845 * 3 2 1 6 6 C 1.53001 * 117.50127 * 180.02562 * 3 2 1 7 7 H 1.08993 * 117.51926 * 145.03107 * 6 3 2 8 8 N 1.46901 * 117.49487 * 0.02562 * 6 3 2 9 9 C 1.46898 * 110.99690 * 154.98521 * 8 6 3 10 10 C 1.50706 * 109.47344 * 179.97438 * 9 8 6 11 11 C 1.38632 * 119.74679 * 89.99796 * 10 9 8 12 12 C 1.37613 * 120.25041 * 179.97438 * 11 10 9 13 13 C 1.40728 * 119.74282 * 359.97438 * 12 11 10 14 14 C 1.41393 * 120.24441 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00018 * 204.33845 * 14 13 12 16 16 C 1.39948 * 119.99688 * 24.34538 * 14 13 12 17 17 N 1.30819 * 120.00393 * 17.81430 * 16 14 13 18 18 Si 1.86804 * 119.99775 * 197.81417 * 16 14 13 19 19 H 1.48501 * 109.47158 * 89.99962 * 18 16 14 20 20 H 1.48498 * 109.47377 * 209.99873 * 18 16 14 21 21 H 1.48500 * 109.46899 * 330.00011 * 18 16 14 22 22 C 1.40713 * 119.50820 * 359.97438 * 13 12 11 23 23 C 1.37613 * 119.74933 * 0.03603 * 22 13 12 24 24 H 1.09002 * 109.46665 * 299.99427 * 1 2 3 25 25 H 1.08991 * 109.47265 * 59.99481 * 1 2 3 26 26 H 1.09003 * 109.47180 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46665 * 240.00573 * 2 1 3 28 28 H 1.08999 * 109.47287 * 120.00190 * 2 1 3 29 29 H 1.09003 * 109.46919 * 274.30845 * 4 3 2 30 30 H 1.08998 * 109.47012 * 34.30641 * 4 3 2 31 31 H 1.08993 * 109.47293 * 154.31175 * 4 3 2 32 32 H 1.08997 * 117.50019 * 0.02562 * 5 3 2 33 33 H 1.08999 * 117.52385 * 214.97070 * 5 3 2 34 34 H 1.00895 * 111.00181 * 278.94217 * 8 6 3 35 35 H 1.09004 * 109.46991 * 60.00207 * 9 8 6 36 36 H 1.09007 * 109.47331 * 300.00227 * 9 8 6 37 37 H 1.08004 * 119.87816 * 0.02562 * 11 10 9 38 38 H 1.08000 * 120.13060 * 179.72766 * 12 11 10 39 39 H 0.97001 * 119.99946 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.12326 * 180.02562 * 22 13 12 41 41 H 1.08000 * 119.87962 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.1852 2.4450 -0.7779 5 6 2.7419 1.9435 1.2638 6 6 3.5551 1.6561 -0.0006 7 1 3.9429 2.5109 -0.5546 8 7 4.4086 0.4605 -0.0017 9 6 5.7256 0.7546 -0.5821 10 6 6.5716 -0.4925 -0.5657 11 6 6.5431 -1.3573 -1.6489 12 6 7.3119 -2.4987 -1.6451 13 6 8.1294 -2.7862 -0.5363 14 6 8.9231 -3.9562 -0.5210 15 1 9.2305 -4.3879 0.4199 16 6 9.3105 -4.5547 -1.7253 17 7 9.2517 -3.8756 -2.8419 18 14 9.9117 -6.3233 -1.7383 19 1 8.7587 -7.2366 -1.9430 20 1 10.8894 -6.5057 -2.8410 21 1 10.5648 -6.6336 -0.4413 22 6 8.1511 -1.9006 0.5569 23 6 7.3739 -0.7652 0.5315 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.4775 2.4340 -1.8279 30 1 0.1339 2.1707 -0.6906 31 1 1.3352 3.4443 -0.3695 32 1 2.8407 1.2454 2.0950 33 1 2.5952 2.9873 1.5412 34 1 4.5000 0.0806 0.9285 35 1 6.2151 1.5329 0.0034 36 1 5.6018 1.0966 -1.6097 37 1 5.9159 -1.1340 -2.4993 38 1 7.2848 -3.1733 -2.4881 39 1 9.5206 -4.2904 -3.6765 40 1 8.7752 -2.1113 1.4128 41 1 7.3886 -0.0843 1.3697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399076148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:28 Heat of formation + Delta-G solvation = 24.387936 kcal Electronic energy + Delta-G solvation = -18550.379980 eV Core-core repulsion = 15815.645943 eV Total energy + Delta-G solvation = -2734.734036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.89994 -37.57251 -34.64835 -33.30403 -31.61964 -29.73116 -29.19397 -27.92792 -25.94630 -23.74085 -23.06678 -21.44833 -20.91211 -19.84203 -18.42306 -17.27731 -15.58331 -15.45153 -15.24458 -14.58253 -14.22261 -14.03979 -13.68591 -13.27831 -13.12502 -13.07446 -12.52698 -12.19435 -11.93458 -11.90288 -11.77796 -11.67186 -11.47740 -11.13706 -11.08713 -10.93616 -10.71777 -10.45534 -10.42044 -10.21869 -9.68080 -9.40641 -9.32431 -9.12162 -7.82403 -7.42062 -7.28549 -6.74839 -4.33645 2.75463 3.07683 3.10277 3.11446 3.19264 3.84739 3.94077 4.36842 4.69968 4.80038 4.90460 5.06663 5.23038 5.36006 5.53330 5.60435 5.68676 5.75315 5.79079 5.79471 5.88731 5.93063 5.97065 6.04070 6.15739 6.22516 6.28307 6.38038 6.38570 6.48138 6.56418 6.98128 7.08843 7.31941 7.38025 7.46489 7.63427 7.72525 7.91429 8.07836 8.17377 8.32261 8.66799 8.91367 9.00042 10.19646 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032574 B = 0.003702 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.380014 B = 7561.331575 C = 7882.244185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.075 4.075 3 C -0.118 4.118 4 C -0.119 4.119 5 C -0.205 4.205 6 C 0.034 3.966 7 H 0.102 0.898 8 N -0.649 5.649 9 C 0.127 3.873 10 C -0.214 4.214 11 C -0.078 4.078 12 C -0.167 4.167 13 C 0.113 3.887 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.792 5.792 18 Si 0.908 3.092 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.228 4.228 23 C -0.085 4.085 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.341 0.659 35 H 0.020 0.980 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.280 0.720 40 H 0.090 0.910 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.551 7.922 3.140 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.119 4.119 4 C -0.177 4.177 5 C -0.243 4.243 6 C -0.077 4.077 7 H 0.120 0.880 8 N -0.279 5.279 9 C -0.001 4.001 10 C -0.216 4.216 11 C -0.097 4.097 12 C -0.187 4.187 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.418 5.418 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.248 4.248 23 C -0.104 4.104 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.160 0.840 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.710 7.655 2.287 14.176 hybrid contribution 0.786 -0.222 0.686 1.066 sum -10.924 7.432 2.973 13.543 Atomic orbital electron populations 1.21877 0.96648 1.01098 1.01322 1.20840 0.94222 0.93389 1.02797 1.21765 0.94218 0.96486 0.99461 1.21450 0.99604 0.97031 0.99573 1.23721 1.06842 1.01458 0.92326 1.22615 0.91373 0.94105 0.99598 0.88008 1.60341 1.14134 1.26213 1.27163 1.20596 0.86497 0.94835 0.98166 1.18890 1.05597 0.99505 0.97615 1.20499 0.98013 0.94988 0.96195 1.21315 0.98585 0.98093 1.00689 1.17627 0.89492 0.91110 0.90745 1.19609 1.28285 1.08235 0.93213 0.90500 1.25907 0.93793 0.99380 0.95064 1.69830 1.35477 1.36626 0.99832 0.86326 0.79078 0.82463 0.78926 1.19257 1.20343 1.18651 1.20924 1.05734 0.97035 1.01066 1.20357 0.97283 0.96761 0.95986 0.93180 0.92579 0.93087 0.90919 0.92068 0.92376 0.91571 0.93048 0.88996 0.89382 0.83968 0.96227 0.91887 0.89474 0.86536 0.90895 0.89191 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.92 37.16 0.33 -1.21 16 2 C -0.07 -0.92 5.58 -26.73 -0.15 -1.07 16 3 C -0.12 -1.40 2.47 -154.51 -0.38 -1.78 16 4 C -0.12 -1.20 9.49 37.16 0.35 -0.84 16 5 C -0.20 -2.35 9.52 -26.71 -0.25 -2.61 16 6 C 0.03 0.46 6.01 -67.69 -0.41 0.05 16 7 H 0.10 1.32 7.90 -51.93 -0.41 0.91 16 8 N -0.65 -10.33 6.14 -107.96 -0.66 -11.00 16 9 C 0.13 2.24 5.65 -4.97 -0.03 2.21 16 10 C -0.21 -4.65 5.42 -104.33 -0.56 -5.21 16 11 C -0.08 -1.84 9.67 -39.66 -0.38 -2.23 16 12 C -0.17 -4.40 8.69 -38.87 -0.34 -4.74 16 13 C 0.11 3.03 5.58 -106.82 -0.60 2.44 16 14 C -0.46 -12.43 9.06 -37.74 -0.34 -12.77 16 15 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 16 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 17 N -0.79 -20.63 10.95 55.55 0.61 -20.02 16 18 Si 0.91 18.78 29.60 -169.99 -5.03 13.74 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 C -0.23 -5.64 9.80 -38.88 -0.38 -6.02 16 23 C -0.09 -1.90 9.67 -39.66 -0.38 -2.28 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.53 6.45 -51.93 -0.33 0.19 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.60 5.58 -51.93 -0.29 0.31 16 31 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 32 H 0.09 1.07 8.00 -51.93 -0.42 0.65 16 33 H 0.09 0.90 8.05 -51.93 -0.42 0.49 16 34 H 0.34 5.45 8.51 -39.29 -0.33 5.11 16 35 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 36 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 38 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 39 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 40 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 41 H 0.08 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -26.68 334.21 -10.36 -37.03 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.69 Total: 9.41 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: -3.61 Total: -34.21 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: -0.05 Total: -31.02 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.68 -10.36 -37.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399076148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.419 kcal (2) G-P(sol) polarization free energy of solvation -26.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds