Wall clock time and date at job start Mon Mar 30 2020 06:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47304 * 2 1 4 4 C 1.53003 * 115.56289 * 325.69620 * 3 2 1 5 5 C 1.52999 * 117.49735 * 111.37845 * 3 2 1 6 6 C 1.53001 * 117.50127 * 180.02562 * 3 2 1 7 7 H 1.08993 * 117.51926 * 145.03107 * 6 3 2 8 8 N 1.46901 * 117.49487 * 0.02562 * 6 3 2 9 9 C 1.46898 * 110.99690 * 154.98521 * 8 6 3 10 10 C 1.50706 * 109.47344 * 179.97438 * 9 8 6 11 11 C 1.38632 * 119.74679 * 89.99796 * 10 9 8 12 12 C 1.37613 * 120.25041 * 179.97438 * 11 10 9 13 13 C 1.40728 * 119.74282 * 359.97438 * 12 11 10 14 14 C 1.41393 * 120.24441 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00018 * 204.33845 * 14 13 12 16 16 C 1.39948 * 119.99688 * 24.34538 * 14 13 12 17 17 N 1.30819 * 120.00393 * 17.81430 * 16 14 13 18 18 Si 1.86804 * 119.99775 * 197.81417 * 16 14 13 19 19 H 1.48501 * 109.47158 * 89.99962 * 18 16 14 20 20 H 1.48498 * 109.47377 * 209.99873 * 18 16 14 21 21 H 1.48500 * 109.46899 * 330.00011 * 18 16 14 22 22 C 1.40713 * 119.50820 * 359.97438 * 13 12 11 23 23 C 1.37613 * 119.74933 * 0.03603 * 22 13 12 24 24 H 1.09002 * 109.46665 * 299.99427 * 1 2 3 25 25 H 1.08991 * 109.47265 * 59.99481 * 1 2 3 26 26 H 1.09003 * 109.47180 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46665 * 240.00573 * 2 1 3 28 28 H 1.08999 * 109.47287 * 120.00190 * 2 1 3 29 29 H 1.09003 * 109.46919 * 274.30845 * 4 3 2 30 30 H 1.08998 * 109.47012 * 34.30641 * 4 3 2 31 31 H 1.08993 * 109.47293 * 154.31175 * 4 3 2 32 32 H 1.08997 * 117.50019 * 0.02562 * 5 3 2 33 33 H 1.08999 * 117.52385 * 214.97070 * 5 3 2 34 34 H 1.00895 * 111.00181 * 278.94217 * 8 6 3 35 35 H 1.09004 * 109.46991 * 60.00207 * 9 8 6 36 36 H 1.09007 * 109.47331 * 300.00227 * 9 8 6 37 37 H 1.08004 * 119.87816 * 0.02562 * 11 10 9 38 38 H 1.08000 * 120.13060 * 179.72766 * 12 11 10 39 39 H 0.97001 * 119.99946 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.12326 * 180.02562 * 22 13 12 41 41 H 1.08000 * 119.87962 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.1852 2.4450 -0.7779 5 6 2.7419 1.9435 1.2638 6 6 3.5551 1.6561 -0.0006 7 1 3.9429 2.5109 -0.5546 8 7 4.4086 0.4605 -0.0017 9 6 5.7256 0.7546 -0.5821 10 6 6.5716 -0.4925 -0.5657 11 6 6.5431 -1.3573 -1.6489 12 6 7.3119 -2.4987 -1.6451 13 6 8.1294 -2.7862 -0.5363 14 6 8.9231 -3.9562 -0.5210 15 1 9.2305 -4.3879 0.4199 16 6 9.3105 -4.5547 -1.7253 17 7 9.2517 -3.8756 -2.8419 18 14 9.9117 -6.3233 -1.7383 19 1 8.7587 -7.2366 -1.9430 20 1 10.8894 -6.5057 -2.8410 21 1 10.5648 -6.6336 -0.4413 22 6 8.1511 -1.9006 0.5569 23 6 7.3739 -0.7652 0.5315 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.4775 2.4340 -1.8279 30 1 0.1339 2.1707 -0.6906 31 1 1.3352 3.4443 -0.3695 32 1 2.8407 1.2454 2.0950 33 1 2.5952 2.9873 1.5412 34 1 4.5000 0.0806 0.9285 35 1 6.2151 1.5329 0.0034 36 1 5.6018 1.0966 -1.6097 37 1 5.9159 -1.1340 -2.4993 38 1 7.2848 -3.1733 -2.4881 39 1 9.5206 -4.2904 -3.6765 40 1 8.7752 -2.1113 1.4128 41 1 7.3886 -0.0843 1.3697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399076148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:28 Heat of formation + Delta-G solvation = 11.801295 kcal Electronic energy + Delta-G solvation = -18550.925777 eV Core-core repulsion = 15815.645943 eV Total energy + Delta-G solvation = -2735.279834 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00901 -39.30218 -36.22425 -34.88830 -32.77386 -31.39614 -31.03476 -28.93341 -27.58786 -24.76443 -24.58017 -22.87806 -22.42168 -21.63516 -19.37986 -19.21428 -17.20357 -16.78118 -16.51254 -15.78062 -15.72565 -15.50344 -15.14461 -14.79873 -14.37345 -14.13649 -13.92838 -13.80666 -13.49114 -13.29353 -12.94991 -12.80433 -12.73861 -12.69622 -12.52963 -12.26065 -12.11029 -11.94064 -11.61652 -11.51343 -11.23168 -11.19255 -10.99302 -10.45000 -9.34261 -9.26716 -8.93247 -8.63378 -6.33049 0.95109 1.16048 1.37630 1.50961 1.51526 2.20796 2.68467 2.88659 3.32020 3.80090 3.87603 3.96605 4.10256 4.23816 4.33944 4.40006 4.50288 4.57625 4.61937 4.67038 4.78673 4.81741 4.88393 4.94818 5.01596 5.07279 5.09917 5.16762 5.17161 5.29675 5.34946 5.39557 5.46220 5.47388 5.64556 5.72039 5.95464 6.11188 6.21334 6.31478 6.39982 6.51758 6.72030 6.95030 7.05241 8.33685 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032574 B = 0.003702 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.380014 B = 7561.331575 C = 7882.244185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.117 4.117 4 C -0.118 4.118 5 C -0.189 4.189 6 C 0.016 3.984 7 H 0.108 0.892 8 N -0.657 5.657 9 C 0.136 3.864 10 C -0.201 4.201 11 C -0.086 4.086 12 C -0.192 4.192 13 C 0.080 3.920 14 C -0.504 4.504 15 H 0.074 0.926 16 C 0.035 3.965 17 N -0.826 5.826 18 Si 0.982 3.018 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.258 1.258 22 C -0.244 4.244 23 C -0.084 4.084 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.339 0.661 35 H 0.035 0.965 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.288 0.712 40 H 0.095 0.905 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.787 9.149 3.833 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.118 4.118 4 C -0.175 4.175 5 C -0.228 4.228 6 C -0.095 4.095 7 H 0.126 0.874 8 N -0.287 5.287 9 C 0.008 3.992 10 C -0.202 4.202 11 C -0.104 4.104 12 C -0.211 4.211 13 C 0.078 3.922 14 C -0.533 4.533 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.452 5.452 18 Si 0.803 3.197 19 H -0.188 1.188 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.263 4.263 23 C -0.103 4.103 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.158 0.842 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.961 8.904 2.986 16.006 hybrid contribution 1.075 -0.460 0.504 1.273 sum -11.886 8.445 3.490 14.992 Atomic orbital electron populations 1.21834 0.94814 1.01568 1.02210 1.20809 0.95879 0.93580 1.01094 1.21865 0.93360 0.96613 0.99985 1.21465 0.99817 0.97087 0.99087 1.23741 1.04962 1.02458 0.91595 1.22672 0.91766 0.93378 1.01651 0.87432 1.60229 1.13268 1.28027 1.27170 1.20461 0.86964 0.92839 0.98980 1.19321 1.04721 0.99995 0.96203 1.20719 0.97690 0.94600 0.97428 1.21268 1.00144 0.99234 1.00472 1.17966 0.90313 0.92137 0.91817 1.19852 1.29980 1.09551 0.93946 0.90793 1.26762 0.93507 1.03519 0.94193 1.69884 1.36276 1.38473 1.00548 0.85204 0.78703 0.76557 0.79230 1.18753 1.19146 1.18192 1.21148 1.06589 0.97769 1.00825 1.20685 0.96210 0.96290 0.97082 0.92200 0.91684 0.92940 0.93255 0.93176 0.92719 0.90458 0.91801 0.89171 0.87532 0.84160 0.94684 0.91593 0.88264 0.88464 0.90182 0.88653 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.92 71.98 0.64 -2.04 16 2 C -0.08 -1.78 5.58 30.59 0.17 -1.61 16 3 C -0.12 -2.50 2.47 -52.18 -0.13 -2.63 16 4 C -0.12 -2.02 9.49 71.98 0.68 -1.34 16 5 C -0.19 -3.80 9.52 30.61 0.29 -3.51 16 6 C 0.02 0.39 6.01 44.93 0.27 0.66 16 7 H 0.11 2.50 7.90 -2.39 -0.02 2.48 16 8 N -0.66 -19.86 6.14 -495.48 -3.04 -22.90 16 9 C 0.14 4.53 5.65 85.56 0.48 5.01 16 10 C -0.20 -8.53 5.42 -19.67 -0.11 -8.63 16 11 C -0.09 -4.09 9.67 22.22 0.21 -3.88 16 12 C -0.19 -10.45 8.69 22.73 0.20 -10.25 16 13 C 0.08 4.45 5.58 -21.29 -0.12 4.33 16 14 C -0.50 -28.02 9.06 23.46 0.21 -27.81 16 15 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 16 C 0.03 1.81 5.14 85.26 0.44 2.25 16 17 N -0.83 -44.37 10.95 21.83 0.24 -44.13 16 18 Si 0.98 39.12 29.60 68.60 2.03 41.15 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 C -0.24 -12.21 9.80 22.73 0.22 -11.99 16 23 C -0.08 -3.66 9.67 22.22 0.21 -3.45 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.07 6.45 -2.39 -0.02 1.05 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.26 7.90 -2.39 -0.02 1.24 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.16 5.58 -2.39 -0.01 1.14 16 31 H 0.06 0.94 7.90 -2.39 -0.02 0.92 16 32 H 0.09 1.87 8.00 -2.39 -0.02 1.85 16 33 H 0.11 1.78 8.05 -2.39 -0.02 1.76 16 34 H 0.34 10.30 8.51 -89.70 -0.76 9.54 16 35 H 0.04 1.08 8.08 -2.39 -0.02 1.06 16 36 H 0.07 2.18 8.08 -2.38 -0.02 2.16 16 37 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16 38 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 39 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 40 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 41 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -58.84 334.21 3.15 -55.69 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.24 Total: 35.08 kcal Atomic # 6 Polarization: -68.58 SS G_CDS: 3.69 Total: -64.89 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -2.80 Total: -67.03 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -58.84 3.15 -55.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399076148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.491 kcal (2) G-P(sol) polarization free energy of solvation -58.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds