Wall clock time and date at job start Mon Mar 30 2020 06:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47082 * 2 1 4 4 C 1.52999 * 115.56200 * 34.30695 * 3 2 1 5 5 C 1.52999 * 117.49692 * 248.62200 * 3 2 1 6 6 C 1.52994 * 117.49866 * 180.02562 * 3 2 1 7 7 H 1.08998 * 117.51767 * 214.96430 * 6 3 2 8 8 N 1.46899 * 117.50167 * 359.97438 * 6 3 2 9 9 C 1.46896 * 111.00094 * 205.01156 * 8 6 3 10 10 C 1.50704 * 109.47058 * 179.97438 * 9 8 6 11 11 C 1.38632 * 119.74757 * 90.00159 * 10 9 8 12 12 C 1.37626 * 120.24382 * 179.97438 * 11 10 9 13 13 C 1.40707 * 119.74508 * 0.02562 * 12 11 10 14 14 C 1.41396 * 120.24296 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99767 * 335.24099 * 14 13 12 16 16 C 1.39945 * 120.00083 * 154.96355 * 14 13 12 17 17 N 1.30814 * 120.00240 * 343.04766 * 16 14 13 18 18 Si 1.86804 * 119.99903 * 163.04877 * 16 14 13 19 19 H 1.48496 * 109.47234 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47273 * 120.00237 * 18 16 14 21 21 H 1.48508 * 109.46795 * 239.99912 * 18 16 14 22 22 C 1.40714 * 119.51699 * 0.25065 * 13 12 11 23 23 C 1.37626 * 119.74000 * 359.49225 * 22 13 12 24 24 H 1.09003 * 109.46665 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47241 * 300.00253 * 1 2 3 26 26 H 1.09001 * 109.47423 * 60.00593 * 1 2 3 27 27 H 1.08992 * 109.47265 * 239.99927 * 2 1 3 28 28 H 1.08998 * 109.46950 * 119.99579 * 2 1 3 29 29 H 1.09000 * 109.47225 * 205.69419 * 4 3 2 30 30 H 1.09001 * 109.47283 * 325.69144 * 4 3 2 31 31 H 1.09003 * 109.47287 * 85.69178 * 4 3 2 32 32 H 1.09007 * 117.50025 * 145.01630 * 5 3 2 33 33 H 1.09005 * 117.51912 * 359.97438 * 5 3 2 34 34 H 1.00902 * 110.99892 * 81.05911 * 8 6 3 35 35 H 1.09002 * 109.46707 * 60.00073 * 9 8 6 36 36 H 1.08996 * 109.47317 * 300.00032 * 9 8 6 37 37 H 1.07995 * 119.87928 * 359.95761 * 11 10 9 38 38 H 1.07994 * 120.12178 * 180.02562 * 12 11 10 39 39 H 0.97000 * 120.00535 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.13313 * 179.75102 * 22 13 12 41 41 H 1.08000 * 119.87372 * 180.27550 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1851 2.4450 0.7779 5 6 2.7419 1.9436 -1.2638 6 6 3.5550 1.6562 -0.0006 7 1 3.9432 2.5109 0.5533 8 7 4.4086 0.4607 -0.0006 9 6 5.7261 0.7546 0.5787 10 6 6.5717 -0.4927 0.5623 11 6 7.3716 -0.7672 -0.5362 12 6 8.1482 -1.9031 -0.5618 13 6 8.1278 -2.7875 0.5324 14 6 8.9211 -3.9578 0.5171 15 1 9.2212 -4.3944 -0.4240 16 6 9.3222 -4.5471 1.7214 17 7 9.2604 -3.8649 2.8359 18 14 9.9460 -6.3078 1.7374 19 1 9.9172 -6.8558 0.3576 20 1 11.3385 -6.3350 2.2524 21 1 9.0774 -7.1327 2.6153 22 6 7.3077 -2.5017 1.6396 23 6 6.5433 -1.3572 1.6457 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3350 3.4443 0.3694 30 1 0.1338 2.1707 0.6907 31 1 1.4775 2.4340 1.8280 32 1 2.5946 2.9875 -1.5410 33 1 2.8409 1.2457 -2.0953 34 1 4.4993 0.0811 -0.9310 35 1 5.6031 1.0963 1.6065 36 1 6.2150 1.5331 -0.0069 37 1 7.3851 -0.0873 -1.3752 38 1 8.7709 -2.1147 -1.4183 39 1 9.5388 -4.2732 3.6706 40 1 7.2812 -3.1757 2.4831 41 1 5.9165 -1.1336 2.4963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399076151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:39 Heat of formation + Delta-G solvation = 24.392069 kcal Electronic energy + Delta-G solvation = -18550.193231 eV Core-core repulsion = 15815.459374 eV Total energy + Delta-G solvation = -2734.733857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -38.90599 -37.57455 -34.64724 -33.30062 -31.62192 -29.73038 -29.19630 -27.92915 -25.94445 -23.74177 -23.06758 -21.44803 -20.91367 -19.84333 -18.42474 -17.27577 -15.58409 -15.45368 -15.24039 -14.58297 -14.22286 -14.03908 -13.68847 -13.27911 -13.12636 -13.07534 -12.52931 -12.19463 -11.93591 -11.90227 -11.77715 -11.66925 -11.48663 -11.13882 -11.07505 -10.93511 -10.71853 -10.44887 -10.42274 -10.22190 -9.67609 -9.40647 -9.32695 -9.12889 -7.82595 -7.42008 -7.27813 -6.74233 -4.33672 2.74729 3.07999 3.10108 3.13694 3.17978 3.84726 3.94511 4.36910 4.70332 4.80004 4.90568 5.06633 5.22915 5.35910 5.53247 5.60383 5.68570 5.75184 5.78935 5.79399 5.88457 5.92942 5.97007 6.03933 6.15676 6.22426 6.28158 6.37952 6.38351 6.48086 6.56371 6.97961 7.09218 7.31671 7.37853 7.46303 7.63535 7.72350 7.91136 8.08057 8.17049 8.32353 8.66994 8.91632 8.99973 10.20442 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032754 B = 0.003697 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.646330 B = 7571.964661 C = 7888.462008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.075 4.075 3 C -0.118 4.118 4 C -0.119 4.119 5 C -0.205 4.205 6 C 0.035 3.965 7 H 0.102 0.898 8 N -0.649 5.649 9 C 0.126 3.874 10 C -0.214 4.214 11 C -0.085 4.085 12 C -0.227 4.227 13 C 0.113 3.887 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.907 3.093 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.272 1.272 22 C -0.166 4.166 23 C -0.078 4.078 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.341 0.659 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.279 0.721 40 H 0.117 0.883 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 7.946 -3.153 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.119 4.119 4 C -0.177 4.177 5 C -0.243 4.243 6 C -0.077 4.077 7 H 0.120 0.880 8 N -0.279 5.279 9 C -0.001 4.001 10 C -0.215 4.215 11 C -0.104 4.104 12 C -0.247 4.247 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.419 5.419 18 Si 0.731 3.269 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.197 1.197 22 C -0.186 4.186 23 C -0.097 4.097 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.160 0.840 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.721 7.677 -2.303 14.199 hybrid contribution 0.807 -0.210 -0.670 1.070 sum -10.913 7.467 -2.974 13.553 Atomic orbital electron populations 1.21879 0.96647 1.01098 1.01322 1.20840 0.94222 0.93387 1.02798 1.21764 0.94220 0.96488 0.99468 1.21450 0.99603 0.97029 0.99572 1.23709 1.06833 1.01464 0.92338 1.22596 0.91366 0.94105 0.99613 0.88011 1.60341 1.14092 1.26241 1.27179 1.20595 0.86498 0.94832 0.98184 1.18893 1.05588 0.99485 0.97557 1.20361 0.97321 0.96767 0.95980 1.20934 1.05707 0.97019 1.01037 1.17627 0.89468 0.91122 0.90745 1.19630 1.28215 1.08289 0.93201 0.90495 1.25901 0.93903 0.99281 0.95069 1.69829 1.35650 1.36553 0.99882 0.86289 0.78695 0.82314 0.79578 1.18427 1.20038 1.19700 1.21314 0.98549 0.98027 1.00689 1.20504 0.98077 0.94933 0.96204 0.93087 0.92585 0.93173 0.92066 0.90920 0.93048 0.91569 0.92375 0.89383 0.88994 0.83968 0.91885 0.96214 0.89937 0.89182 0.90963 0.86557 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.92 37.16 0.33 -1.21 16 2 C -0.07 -0.92 5.58 -26.73 -0.15 -1.07 16 3 C -0.12 -1.40 2.47 -154.51 -0.38 -1.78 16 4 C -0.12 -1.20 9.49 37.16 0.35 -0.84 16 5 C -0.20 -2.35 9.52 -26.76 -0.25 -2.61 16 6 C 0.03 0.46 6.01 -67.74 -0.41 0.05 16 7 H 0.10 1.32 7.90 -51.93 -0.41 0.91 16 8 N -0.65 -10.32 6.14 -108.03 -0.66 -10.99 16 9 C 0.13 2.24 5.65 -4.98 -0.03 2.21 16 10 C -0.21 -4.63 5.42 -104.33 -0.56 -5.19 16 11 C -0.09 -1.90 9.67 -39.66 -0.38 -2.29 16 12 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 13 C 0.11 3.04 5.57 -106.83 -0.59 2.44 16 14 C -0.46 -12.43 9.05 -37.74 -0.34 -12.77 16 15 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 16 C 0.08 1.92 5.15 -17.35 -0.09 1.83 16 17 N -0.79 -20.68 10.96 55.55 0.61 -20.07 16 18 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 C -0.17 -4.37 8.69 -38.87 -0.34 -4.71 16 23 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.53 6.45 -51.93 -0.33 0.19 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 30 H 0.07 0.60 5.58 -51.93 -0.29 0.31 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.90 8.05 -51.93 -0.42 0.49 16 33 H 0.09 1.07 7.99 -51.93 -0.42 0.65 16 34 H 0.34 5.44 8.51 -39.29 -0.33 5.11 16 35 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 37 H 0.08 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 39 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 40 H 0.12 3.16 6.19 -52.48 -0.32 2.84 16 41 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -26.71 334.23 -10.36 -37.07 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.70 Total: 9.36 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: -3.61 Total: -34.15 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: -0.05 Total: -31.06 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.71 -10.36 -37.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399076151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.462 kcal (2) G-P(sol) polarization free energy of solvation -26.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds