Wall clock time and date at job start Mon Mar 30 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47082 * 2 1 4 4 C 1.52999 * 115.56200 * 34.30695 * 3 2 1 5 5 C 1.52999 * 117.49692 * 248.62200 * 3 2 1 6 6 C 1.52994 * 117.49866 * 180.02562 * 3 2 1 7 7 H 1.08998 * 117.51767 * 214.96430 * 6 3 2 8 8 N 1.46899 * 117.50167 * 359.97438 * 6 3 2 9 9 C 1.46896 * 111.00094 * 205.01156 * 8 6 3 10 10 C 1.50704 * 109.47058 * 179.97438 * 9 8 6 11 11 C 1.38632 * 119.74757 * 90.00159 * 10 9 8 12 12 C 1.37626 * 120.24382 * 179.97438 * 11 10 9 13 13 C 1.40707 * 119.74508 * 0.02562 * 12 11 10 14 14 C 1.41396 * 120.24296 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99767 * 335.24099 * 14 13 12 16 16 C 1.39945 * 120.00083 * 154.96355 * 14 13 12 17 17 N 1.30814 * 120.00240 * 343.04766 * 16 14 13 18 18 Si 1.86804 * 119.99903 * 163.04877 * 16 14 13 19 19 H 1.48496 * 109.47234 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47273 * 120.00237 * 18 16 14 21 21 H 1.48508 * 109.46795 * 239.99912 * 18 16 14 22 22 C 1.40714 * 119.51699 * 0.25065 * 13 12 11 23 23 C 1.37626 * 119.74000 * 359.49225 * 22 13 12 24 24 H 1.09003 * 109.46665 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47241 * 300.00253 * 1 2 3 26 26 H 1.09001 * 109.47423 * 60.00593 * 1 2 3 27 27 H 1.08992 * 109.47265 * 239.99927 * 2 1 3 28 28 H 1.08998 * 109.46950 * 119.99579 * 2 1 3 29 29 H 1.09000 * 109.47225 * 205.69419 * 4 3 2 30 30 H 1.09001 * 109.47283 * 325.69144 * 4 3 2 31 31 H 1.09003 * 109.47287 * 85.69178 * 4 3 2 32 32 H 1.09007 * 117.50025 * 145.01630 * 5 3 2 33 33 H 1.09005 * 117.51912 * 359.97438 * 5 3 2 34 34 H 1.00902 * 110.99892 * 81.05911 * 8 6 3 35 35 H 1.09002 * 109.46707 * 60.00073 * 9 8 6 36 36 H 1.08996 * 109.47317 * 300.00032 * 9 8 6 37 37 H 1.07995 * 119.87928 * 359.95761 * 11 10 9 38 38 H 1.07994 * 120.12178 * 180.02562 * 12 11 10 39 39 H 0.97000 * 120.00535 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.13313 * 179.75102 * 22 13 12 41 41 H 1.08000 * 119.87372 * 180.27550 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1851 2.4450 0.7779 5 6 2.7419 1.9436 -1.2638 6 6 3.5550 1.6562 -0.0006 7 1 3.9432 2.5109 0.5533 8 7 4.4086 0.4607 -0.0006 9 6 5.7261 0.7546 0.5787 10 6 6.5717 -0.4927 0.5623 11 6 7.3716 -0.7672 -0.5362 12 6 8.1482 -1.9031 -0.5618 13 6 8.1278 -2.7875 0.5324 14 6 8.9211 -3.9578 0.5171 15 1 9.2212 -4.3944 -0.4240 16 6 9.3222 -4.5471 1.7214 17 7 9.2604 -3.8649 2.8359 18 14 9.9460 -6.3078 1.7374 19 1 9.9172 -6.8558 0.3576 20 1 11.3385 -6.3350 2.2524 21 1 9.0774 -7.1327 2.6153 22 6 7.3077 -2.5017 1.6396 23 6 6.5433 -1.3572 1.6457 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3350 3.4443 0.3694 30 1 0.1338 2.1707 0.6907 31 1 1.4775 2.4340 1.8280 32 1 2.5946 2.9875 -1.5410 33 1 2.8409 1.2457 -2.0953 34 1 4.4993 0.0811 -0.9310 35 1 5.6031 1.0963 1.6065 36 1 6.2150 1.5331 -0.0069 37 1 7.3851 -0.0873 -1.3752 38 1 8.7709 -2.1147 -1.4183 39 1 9.5388 -4.2732 3.6706 40 1 7.2812 -3.1757 2.4831 41 1 5.9165 -1.1336 2.4963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399076151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:38 Heat of formation + Delta-G solvation = 11.766206 kcal Electronic energy + Delta-G solvation = -18550.740730 eV Core-core repulsion = 15815.459374 eV Total energy + Delta-G solvation = -2735.281356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.01341 -39.30431 -36.22162 -34.88604 -32.77566 -31.39525 -31.03630 -28.93390 -27.58653 -24.76485 -24.58052 -22.87945 -22.41974 -21.63608 -19.38061 -19.21342 -17.20086 -16.78103 -16.51448 -15.77704 -15.72773 -15.50358 -15.14539 -14.79878 -14.37568 -14.13860 -13.92805 -13.80688 -13.48537 -13.29948 -12.94769 -12.80478 -12.73100 -12.69847 -12.52881 -12.26606 -12.10784 -11.94006 -11.61591 -11.51115 -11.23487 -11.19322 -10.99899 -10.44860 -9.34104 -9.26070 -8.93219 -8.62894 -6.33191 0.94778 1.15805 1.37821 1.49523 1.53290 2.21102 2.68786 2.88770 3.32078 3.79968 3.87662 3.96789 4.10214 4.23829 4.33791 4.39974 4.50267 4.57494 4.61948 4.67051 4.78696 4.81737 4.88374 4.94769 5.01619 5.07178 5.09894 5.17073 5.17256 5.29700 5.34925 5.39332 5.46258 5.47273 5.64575 5.72207 5.95280 6.11316 6.21197 6.31315 6.40091 6.51678 6.72170 6.95260 7.05155 8.34481 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.032754 B = 0.003697 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.646330 B = 7571.964661 C = 7888.462008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.117 4.117 4 C -0.118 4.118 5 C -0.189 4.189 6 C 0.016 3.984 7 H 0.108 0.892 8 N -0.657 5.657 9 C 0.135 3.865 10 C -0.200 4.200 11 C -0.084 4.084 12 C -0.243 4.243 13 C 0.080 3.920 14 C -0.503 4.503 15 H 0.074 0.926 16 C 0.034 3.966 17 N -0.827 5.827 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.264 1.264 22 C -0.190 4.190 23 C -0.086 4.086 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.339 0.661 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.287 0.713 40 H 0.097 0.903 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.786 9.185 -3.838 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.118 4.118 4 C -0.175 4.175 5 C -0.228 4.228 6 C -0.095 4.095 7 H 0.126 0.874 8 N -0.287 5.287 9 C 0.007 3.993 10 C -0.201 4.201 11 C -0.103 4.103 12 C -0.263 4.263 13 C 0.078 3.922 14 C -0.533 4.533 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.454 5.454 18 Si 0.803 3.197 19 H -0.182 1.182 20 H -0.190 1.190 21 H -0.189 1.189 22 C -0.210 4.210 23 C -0.105 4.105 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.158 0.842 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.964 8.938 -2.993 16.029 hybrid contribution 1.095 -0.451 -0.491 1.282 sum -11.869 8.488 -3.484 15.002 Atomic orbital electron populations 1.21836 0.94814 1.01568 1.02210 1.20809 0.95878 0.93580 1.01096 1.21863 0.93363 0.96614 0.99994 1.21465 0.99816 0.97086 0.99086 1.23729 1.04955 1.02463 0.91607 1.22653 0.91756 0.93378 1.01663 0.87436 1.60229 1.13227 1.28054 1.27188 1.20459 0.86964 0.92836 0.98998 1.19325 1.04700 0.99978 0.96146 1.20689 0.96242 0.96290 0.97084 1.21158 1.06561 0.97756 1.00790 1.17964 0.90284 0.92152 0.91826 1.19867 1.29921 1.09601 0.93919 0.90827 1.26757 0.93664 1.03383 0.94200 1.69881 1.36459 1.38405 1.00611 0.85163 0.78421 0.76512 0.79610 1.18207 1.18966 1.18904 1.21263 1.00098 0.99167 1.00462 1.20723 0.97757 0.94541 0.97439 0.92941 0.91691 0.92193 0.93173 0.93254 0.91801 0.90457 0.92718 0.87533 0.89167 0.84156 0.91593 0.94665 0.86696 0.88642 0.90214 0.88507 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.92 71.98 0.64 -2.04 16 2 C -0.08 -1.78 5.58 30.60 0.17 -1.61 16 3 C -0.12 -2.50 2.47 -52.18 -0.13 -2.63 16 4 C -0.12 -2.02 9.49 71.98 0.68 -1.33 16 5 C -0.19 -3.80 9.52 30.58 0.29 -3.51 16 6 C 0.02 0.39 6.01 44.90 0.27 0.66 16 7 H 0.11 2.50 7.90 -2.39 -0.02 2.48 16 8 N -0.66 -19.83 6.14 -495.69 -3.04 -22.88 16 9 C 0.14 4.52 5.65 85.56 0.48 5.00 16 10 C -0.20 -8.48 5.42 -19.67 -0.11 -8.59 16 11 C -0.08 -3.68 9.67 22.22 0.21 -3.46 16 12 C -0.24 -12.17 9.80 22.73 0.22 -11.95 16 13 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 14 C -0.50 -28.02 9.05 23.46 0.21 -27.81 16 15 H 0.07 3.96 7.90 -2.91 -0.02 3.94 16 16 C 0.03 1.78 5.15 85.26 0.44 2.22 16 17 N -0.83 -44.49 10.96 21.83 0.24 -44.25 16 18 Si 0.98 39.16 29.59 68.60 2.03 41.19 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 22 C -0.19 -10.38 8.69 22.73 0.20 -10.18 16 23 C -0.09 -4.10 9.67 22.22 0.21 -3.89 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 1.07 6.45 -2.38 -0.02 1.05 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.26 7.90 -2.39 -0.02 1.24 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 0.94 7.90 -2.39 -0.02 0.92 16 30 H 0.08 1.16 5.58 -2.39 -0.01 1.14 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 1.78 8.05 -2.38 -0.02 1.76 16 33 H 0.09 1.87 7.99 -2.38 -0.02 1.85 16 34 H 0.34 10.29 8.51 -89.69 -0.76 9.53 16 35 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 36 H 0.04 1.08 8.08 -2.39 -0.02 1.06 16 37 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 38 H 0.10 4.54 8.06 -2.91 -0.02 4.51 16 39 H 0.29 13.90 8.30 -92.71 -0.77 13.14 16 40 H 0.10 5.56 6.19 -2.91 -0.02 5.54 16 41 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -58.93 334.23 3.15 -55.78 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.24 Total: 34.93 kcal Atomic # 6 Polarization: -68.46 SS G_CDS: 3.69 Total: -64.77 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -2.80 Total: -67.13 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -58.93 3.15 -55.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399076151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.546 kcal (2) G-P(sol) polarization free energy of solvation -58.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds