Wall clock time and date at job start Mon Mar 30 2020 07:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.08994 * 109.47510 * 305.00071 * 3 2 1 5 5 C 1.50695 * 109.47112 * 184.99734 * 3 2 1 6 6 H 1.08008 * 120.00492 * 239.99975 * 5 3 2 7 7 C 1.37883 * 120.00022 * 60.00185 * 5 3 2 8 8 N 1.31506 * 119.99661 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00033 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47482 * 59.99806 * 9 7 5 11 11 H 1.48502 * 109.47053 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47304 * 299.99988 * 9 7 5 13 13 N 1.46505 * 109.47119 * 65.00050 * 3 2 1 14 14 C 1.39681 * 119.99953 * 274.99845 * 13 3 2 15 15 C 1.38937 * 120.19159 * 359.97438 * 14 13 3 16 16 C 1.37794 * 119.69452 * 180.11546 * 15 14 13 17 17 C 1.38985 * 120.64647 * 0.04769 * 16 15 14 18 18 C 1.37730 * 119.79930 * 359.66722 * 17 16 15 19 19 C 1.38601 * 120.19276 * 179.72237 * 14 13 3 20 20 C 1.50641 * 122.55723 * 180.76693 * 18 17 16 21 21 C 1.52737 * 110.58149 * 341.88958 * 20 18 17 22 22 C 1.53322 * 108.38155 * 51.20602 * 21 20 18 23 23 C 1.50655 * 117.67579 * 179.30675 * 17 16 15 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 29 29 H 0.97000 * 120.00153 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00036 * 95.00156 * 13 3 2 31 31 H 1.08002 * 120.15580 * 0.10183 * 15 14 13 32 32 H 1.07997 * 119.67623 * 180.02562 * 16 15 14 33 33 H 1.07997 * 119.75877 * 359.97438 * 19 14 13 34 34 H 1.08994 * 109.25646 * 102.17019 * 20 18 17 35 35 H 1.08997 * 109.25841 * 221.60935 * 20 18 17 36 36 H 1.08997 * 109.68373 * 170.93581 * 21 20 18 37 37 H 1.09003 * 109.67648 * 291.48264 * 21 20 18 38 38 H 1.08999 * 109.67649 * 49.89875 * 22 21 20 39 39 H 1.09004 * 109.67001 * 170.39978 * 22 21 20 40 40 H 1.08996 * 109.24891 * 282.64016 * 23 17 16 41 41 H 1.09003 * 109.25442 * 42.06391 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3366 -2.1727 9 14 6.0050 0.8799 -1.3810 10 1 6.5967 0.1451 -0.2341 11 1 6.3979 0.2155 -2.6497 12 1 6.5006 2.2798 -1.3806 13 7 1.6525 2.0975 1.2519 14 6 0.3909 2.6850 1.3712 15 6 -0.4993 2.6511 0.3050 16 6 -1.7403 3.2361 0.4331 17 6 -2.1102 3.8608 1.6183 18 6 -1.2322 3.8910 2.6790 19 6 0.0179 3.3007 2.5556 20 6 -1.5746 4.5357 3.9967 21 6 -2.7581 5.4880 3.8371 22 6 -3.8914 4.7362 3.1291 23 6 -3.4766 4.4922 1.6797 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.8294 -0.0619 -2.9494 30 1 2.2720 2.1231 1.9978 31 1 -0.2199 2.1687 -0.6200 32 1 -2.4323 3.2091 -0.3956 33 1 0.7064 3.3245 3.3873 34 1 -1.8312 3.7616 4.7198 35 1 -0.7111 5.0934 4.3593 36 1 -3.0956 5.8218 4.8182 37 1 -2.4585 6.3486 3.2390 38 1 -4.0658 3.7822 3.6265 39 1 -4.8015 5.3355 3.1551 40 1 -3.4575 5.4427 1.1465 41 1 -4.2005 3.8294 1.2055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404657890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:39 Heat of formation + Delta-G solvation = 0.997102 kcal Electronic energy + Delta-G solvation = -19433.469767 eV Core-core repulsion = 16697.721428 eV Total energy + Delta-G solvation = -2735.748339 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.62439 -37.19041 -34.74727 -32.64016 -32.03158 -30.84811 -29.14641 -28.00275 -26.04986 -23.31642 -22.97922 -21.98806 -21.61954 -19.94721 -18.41329 -17.09800 -16.01765 -15.45929 -15.04839 -14.71668 -14.21631 -14.02115 -13.68549 -13.54641 -13.19859 -12.79309 -12.77729 -12.30197 -12.15292 -11.74405 -11.71825 -11.28450 -11.14806 -10.97667 -10.93354 -10.80990 -10.79621 -10.33624 -10.20727 -10.12481 -9.96805 -9.59407 -9.12979 -8.87420 -8.43790 -8.05802 -6.37021 -6.15840 -4.24193 2.03940 2.27233 3.23946 3.28984 3.31033 4.26048 4.45985 4.60877 4.92783 4.95679 4.99325 5.15516 5.40782 5.48042 5.58210 5.71096 5.73698 5.77158 5.89902 5.99208 6.07438 6.10160 6.16296 6.24912 6.28442 6.39257 6.43384 6.50857 6.58102 6.63635 6.93415 6.99100 7.06406 7.14117 7.24768 7.30710 7.46131 7.61062 7.71533 7.85616 8.10574 8.41343 8.74368 8.94038 9.42811 10.89255 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037861 B = 0.004593 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.378533 B = 6095.045366 C = 6453.206884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.274 3.726 4 H 0.039 0.961 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.726 5.726 14 C 0.238 3.762 15 C -0.196 4.196 16 C -0.078 4.078 17 C -0.163 4.163 18 C -0.032 4.032 19 C -0.226 4.226 20 C -0.078 4.078 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.065 4.065 24 H 0.047 0.953 25 H 0.028 0.972 26 H 0.049 0.951 27 H 0.033 0.967 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 6.138 8.189 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.171 3.829 4 H 0.057 0.943 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.129 3.871 15 C -0.218 4.218 16 C -0.097 4.097 17 C -0.166 4.166 18 C -0.032 4.032 19 C -0.250 4.250 20 C -0.115 4.115 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.102 4.102 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.150 0.850 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.936 5.914 7.779 14.666 hybrid contribution 1.360 -0.167 0.075 1.373 sum -9.576 5.747 7.854 13.653 Atomic orbital electron populations 1.22199 0.98973 0.99057 1.00614 1.22023 0.92230 1.00433 1.02460 1.18708 0.94370 0.88708 0.81111 0.94310 1.21199 0.90904 1.38684 1.06143 0.92244 1.24867 0.98609 0.94762 0.95383 1.69854 1.35238 1.37802 1.09434 0.86522 0.84913 0.78339 0.77434 1.20194 1.21107 1.20181 1.45523 1.12222 1.59213 1.17805 1.17902 0.86393 0.89877 0.92936 1.21022 0.94588 1.06480 0.99760 1.20788 0.95816 0.96673 0.96377 1.19062 0.96468 1.06409 0.94648 1.19092 0.92977 0.96896 0.94280 1.20421 0.98060 1.08929 0.97555 1.20416 0.98111 0.98026 0.94914 1.21515 0.95586 0.98292 1.00056 1.21516 0.97487 1.00274 0.96228 1.20226 0.93969 0.99689 0.96299 0.93440 0.95338 0.93193 0.94795 0.88343 0.92527 0.77911 0.84988 0.87311 0.87394 0.91282 0.91395 0.92181 0.91826 0.91950 0.92275 0.92070 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.22 37.16 0.31 -2.78 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.62 2.20 -69.08 -0.15 6.47 16 4 H 0.04 1.04 6.50 -51.93 -0.34 0.70 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -24.19 11.29 55.43 0.63 -23.56 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.73 -15.30 5.18 -53.37 -0.28 -15.58 16 14 C 0.24 4.66 5.48 -83.89 -0.46 4.20 16 15 C -0.20 -3.77 6.73 -39.48 -0.27 -4.03 16 16 C -0.08 -1.30 9.60 -39.47 -0.38 -1.68 16 17 C -0.16 -2.55 5.74 -104.55 -0.60 -3.15 16 18 C -0.03 -0.50 5.74 -104.63 -0.60 -1.10 16 19 C -0.23 -3.94 9.46 -39.24 -0.37 -4.31 16 20 C -0.08 -0.96 5.67 -28.05 -0.16 -1.12 16 21 C -0.12 -1.25 5.98 -26.70 -0.16 -1.41 16 22 C -0.12 -1.26 5.98 -26.71 -0.16 -1.41 16 23 C -0.06 -0.80 5.67 -28.05 -0.16 -0.96 16 24 H 0.05 0.95 6.35 -51.93 -0.33 0.62 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.01 5.39 -51.93 -0.28 0.73 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.39 7.73 8.55 -40.82 -0.35 7.38 16 31 H 0.13 2.71 4.03 -52.49 -0.21 2.50 16 32 H 0.11 1.60 8.05 -52.49 -0.42 1.18 16 33 H 0.11 1.73 8.05 -52.49 -0.42 1.31 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -26.80 313.47 -10.07 -36.87 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.42 Total: 9.09 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -3.70 Total: -27.13 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.35 Total: -39.14 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.80 -10.07 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404657890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.867 kcal (2) G-P(sol) polarization free energy of solvation -26.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds