Wall clock time and date at job start Mon Mar 30 2020 07:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.08994 * 109.47510 * 305.00071 * 3 2 1 5 5 C 1.50695 * 109.47112 * 184.99734 * 3 2 1 6 6 H 1.08008 * 120.00492 * 239.99975 * 5 3 2 7 7 C 1.37883 * 120.00022 * 60.00185 * 5 3 2 8 8 N 1.31506 * 119.99661 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00033 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47482 * 59.99806 * 9 7 5 11 11 H 1.48502 * 109.47053 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47304 * 299.99988 * 9 7 5 13 13 N 1.46505 * 109.47119 * 65.00050 * 3 2 1 14 14 C 1.39681 * 119.99953 * 274.99845 * 13 3 2 15 15 C 1.38937 * 120.19159 * 359.97438 * 14 13 3 16 16 C 1.37794 * 119.69452 * 180.11546 * 15 14 13 17 17 C 1.38985 * 120.64647 * 0.04769 * 16 15 14 18 18 C 1.37730 * 119.79930 * 359.66722 * 17 16 15 19 19 C 1.38601 * 120.19276 * 179.72237 * 14 13 3 20 20 C 1.50641 * 122.55723 * 180.76693 * 18 17 16 21 21 C 1.52737 * 110.58149 * 341.88958 * 20 18 17 22 22 C 1.53322 * 108.38155 * 51.20602 * 21 20 18 23 23 C 1.50655 * 117.67579 * 179.30675 * 17 16 15 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 29 29 H 0.97000 * 120.00153 * 180.02562 * 8 7 5 30 30 H 0.97001 * 120.00036 * 95.00156 * 13 3 2 31 31 H 1.08002 * 120.15580 * 0.10183 * 15 14 13 32 32 H 1.07997 * 119.67623 * 180.02562 * 16 15 14 33 33 H 1.07997 * 119.75877 * 359.97438 * 19 14 13 34 34 H 1.08994 * 109.25646 * 102.17019 * 20 18 17 35 35 H 1.08997 * 109.25841 * 221.60935 * 20 18 17 36 36 H 1.08997 * 109.68373 * 170.93581 * 21 20 18 37 37 H 1.09003 * 109.67648 * 291.48264 * 21 20 18 38 38 H 1.08999 * 109.67649 * 49.89875 * 22 21 20 39 39 H 1.09004 * 109.67001 * 170.39978 * 22 21 20 40 40 H 1.08996 * 109.24891 * 282.64016 * 23 17 16 41 41 H 1.09003 * 109.25442 * 42.06391 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3366 -2.1727 9 14 6.0050 0.8799 -1.3810 10 1 6.5967 0.1451 -0.2341 11 1 6.3979 0.2155 -2.6497 12 1 6.5006 2.2798 -1.3806 13 7 1.6525 2.0975 1.2519 14 6 0.3909 2.6850 1.3712 15 6 -0.4993 2.6511 0.3050 16 6 -1.7403 3.2361 0.4331 17 6 -2.1102 3.8608 1.6183 18 6 -1.2322 3.8910 2.6790 19 6 0.0179 3.3007 2.5556 20 6 -1.5746 4.5357 3.9967 21 6 -2.7581 5.4880 3.8371 22 6 -3.8914 4.7362 3.1291 23 6 -3.4766 4.4922 1.6797 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.8294 -0.0619 -2.9494 30 1 2.2720 2.1231 1.9978 31 1 -0.2199 2.1687 -0.6200 32 1 -2.4323 3.2091 -0.3956 33 1 0.7064 3.3245 3.3873 34 1 -1.8312 3.7616 4.7198 35 1 -0.7111 5.0934 4.3593 36 1 -3.0956 5.8218 4.8182 37 1 -2.4585 6.3486 3.2390 38 1 -4.0658 3.7822 3.6265 39 1 -4.8015 5.3355 3.1551 40 1 -3.4575 5.4427 1.1465 41 1 -4.2005 3.8294 1.2055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404657890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:39 Heat of formation + Delta-G solvation = -11.460202 kcal Electronic energy + Delta-G solvation = -19434.009956 eV Core-core repulsion = 16697.721428 eV Total energy + Delta-G solvation = -2736.288528 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92870 -38.62295 -36.20237 -34.30064 -33.48041 -32.37954 -30.48659 -29.42954 -27.71743 -24.90204 -24.35995 -23.27015 -22.88688 -21.51020 -19.70716 -18.92706 -17.50217 -17.04731 -16.61353 -16.04655 -15.74441 -15.23778 -15.08537 -14.71925 -14.57309 -14.38278 -14.08506 -13.60846 -13.50933 -13.30494 -13.12705 -12.95929 -12.73630 -12.67202 -12.40048 -12.19610 -12.06562 -11.90770 -11.63615 -11.52566 -11.18415 -11.10463 -10.92201 -10.60053 -10.26592 -9.40020 -8.19324 -7.88578 -6.33570 0.67400 0.91089 1.41366 1.42141 1.50098 2.36609 2.99445 3.08084 3.12499 3.90703 3.99153 4.15679 4.25338 4.35783 4.40117 4.49061 4.56581 4.68246 4.71691 4.74346 4.79033 4.84659 4.97452 5.00723 5.10025 5.16689 5.23416 5.25295 5.26245 5.30415 5.38469 5.40252 5.56431 5.56976 5.65838 5.69968 5.81406 5.87240 6.01199 6.15866 6.31092 6.58451 6.90176 7.25688 7.39502 8.86209 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.037861 B = 0.004593 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.378533 B = 6095.045366 C = 6453.206884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.285 3.715 4 H 0.006 0.994 5 C -0.551 4.551 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.964 3.036 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.274 1.274 13 N -0.733 5.733 14 C 0.212 3.788 15 C -0.216 4.216 16 C -0.083 4.083 17 C -0.158 4.158 18 C -0.036 4.036 19 C -0.228 4.228 20 C -0.078 4.078 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.067 4.067 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.265 0.735 30 H 0.391 0.609 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.448 7.321 9.820 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.181 3.819 4 H 0.024 0.976 5 C -0.589 4.589 6 H 0.076 0.924 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.789 3.211 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.105 3.895 15 C -0.238 4.238 16 C -0.102 4.102 17 C -0.161 4.161 18 C -0.036 4.036 19 C -0.251 4.251 20 C -0.115 4.115 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.104 4.104 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.224 0.776 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.367 7.118 9.432 17.105 hybrid contribution 1.679 -0.456 -0.401 1.785 sum -10.688 6.662 9.031 15.498 Atomic orbital electron populations 1.22029 0.96677 0.99988 1.00634 1.21852 0.94247 0.99626 1.00673 1.18315 0.93194 0.88831 0.81539 0.97627 1.21553 0.92236 1.38786 1.06364 0.92367 1.25648 1.02890 0.94386 0.95061 1.69985 1.36847 1.38293 1.09784 0.85531 0.79731 0.78334 0.77539 1.19524 1.20690 1.19890 1.45202 1.13272 1.60522 1.16791 1.18111 0.85939 0.91255 0.94148 1.20957 0.95911 1.07899 0.99040 1.21064 0.95146 0.96235 0.97731 1.19544 0.97980 1.04817 0.93725 1.19562 0.92079 0.96017 0.95973 1.20666 0.99137 1.08354 0.96979 1.20503 0.99410 0.98658 0.92958 1.21533 0.94694 0.97578 1.01420 1.21532 0.98419 1.00711 0.94633 1.20325 0.91960 0.99974 0.98140 0.93708 0.93763 0.92904 0.95379 0.91029 0.92533 0.77568 0.87253 0.85497 0.86295 0.90204 0.90688 0.89780 0.92119 0.92070 0.89916 0.91149 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 8.22 71.98 0.59 -5.09 16 2 C -0.12 -6.06 5.45 30.60 0.17 -5.90 16 3 C 0.29 14.44 2.20 44.24 0.10 14.54 16 4 H 0.01 0.34 6.50 -2.39 -0.02 0.32 16 5 C -0.55 -29.92 8.73 25.60 0.22 -29.69 16 6 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 7 C 0.02 1.11 5.29 84.66 0.45 1.56 16 8 N -0.91 -51.27 11.29 21.45 0.24 -51.03 16 9 Si 0.96 42.79 29.54 68.60 2.03 44.81 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 N -0.73 -32.02 5.18 -322.75 -1.67 -33.69 16 14 C 0.21 8.45 5.48 38.14 0.21 8.66 16 15 C -0.22 -8.49 6.73 22.33 0.15 -8.34 16 16 C -0.08 -2.74 9.60 22.34 0.21 -2.53 16 17 C -0.16 -4.63 5.74 -19.82 -0.11 -4.74 16 18 C -0.04 -1.05 5.74 -19.87 -0.11 -1.17 16 19 C -0.23 -7.80 9.46 22.49 0.21 -7.59 16 20 C -0.08 -1.71 5.67 29.74 0.17 -1.54 16 21 C -0.11 -2.00 5.98 30.61 0.18 -1.82 16 22 C -0.12 -2.00 5.98 30.61 0.18 -1.82 16 23 C -0.07 -1.44 5.67 29.74 0.17 -1.27 16 24 H 0.04 1.87 6.35 -2.39 -0.02 1.85 16 25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 2.16 5.39 -2.39 -0.01 2.15 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 28 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 29 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.39 16.08 8.55 -92.71 -0.79 15.29 16 31 H 0.11 4.76 4.03 -2.91 -0.01 4.75 16 32 H 0.13 3.61 8.05 -2.91 -0.02 3.58 16 33 H 0.12 3.71 8.05 -2.91 -0.02 3.69 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.06 1.09 8.10 -2.39 -0.02 1.08 16 39 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 Total: -1.00 -58.76 313.47 3.61 -55.15 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.22 Total: 31.49 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 2.79 Total: -46.73 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -1.43 Total: -84.72 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -58.76 3.61 -55.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404657890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.687 kcal (2) G-P(sol) polarization free energy of solvation -58.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds