Wall clock time and date at job start Mon Mar 30 2020 06:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38243 * 120.00321 * 2 1 4 4 C 1.38229 * 120.00368 * 180.02562 * 3 2 1 5 5 C 1.38239 * 119.99873 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99922 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47244 * 90.00203 * 6 5 4 8 8 C 1.46891 * 111.00097 * 179.97438 * 7 6 5 9 9 H 1.08998 * 110.43494 * 323.91749 * 8 7 6 10 10 C 1.54274 * 110.48375 * 86.45454 * 8 7 6 11 11 C 1.53874 * 106.59583 * 142.42106 * 10 8 7 12 12 C 1.54261 * 106.60056 * 0.02562 * 11 10 8 13 13 H 1.08999 * 110.48869 * 95.20527 * 12 11 10 14 14 C 1.50702 * 110.48402 * 217.71282 * 12 11 10 15 15 H 1.08002 * 120.00299 * 118.55010 * 14 12 11 16 16 C 1.37884 * 119.99942 * 298.26568 * 14 12 11 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 12 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 12 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.54885 * 104.19644 * 336.38879 * 12 11 10 23 23 C 1.38233 * 120.00045 * 0.25421 * 5 4 3 24 24 C 1.38236 * 120.00015 * 359.49455 * 23 5 4 25 25 H 1.09004 * 109.47279 * 89.99352 * 1 2 3 26 26 H 1.08996 * 109.47193 * 210.00062 * 1 2 3 27 27 H 1.09004 * 109.46739 * 330.00162 * 1 2 3 28 28 H 1.08006 * 119.99457 * 0.02562 * 3 2 1 29 29 H 1.07990 * 120.00289 * 179.97438 * 4 3 2 30 30 H 1.08994 * 109.46682 * 329.99994 * 6 5 4 31 31 H 1.08999 * 109.46601 * 210.00038 * 6 5 4 32 32 H 1.00897 * 111.00018 * 303.95421 * 7 6 5 33 33 H 1.08998 * 110.03110 * 23.13542 * 10 8 7 34 34 H 1.08998 * 110.07045 * 261.72528 * 10 8 7 35 35 H 1.09004 * 110.03230 * 240.71337 * 11 10 8 36 36 H 1.09007 * 110.07012 * 119.30855 * 11 10 8 37 37 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 38 38 H 1.09002 * 110.75604 * 156.26006 * 22 12 11 39 39 H 1.09004 * 110.75942 * 279.62814 * 22 12 11 40 40 H 1.08001 * 120.00169 * 179.72481 * 23 5 4 41 41 H 1.08000 * 120.00355 * 180.23373 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 7 6.2695 -0.0007 1.3818 8 6 7.7379 -0.0013 1.4199 9 1 8.1395 -0.6027 0.6043 10 6 8.2805 1.4409 1.3450 11 6 9.5055 1.4984 2.2745 12 6 9.6649 0.0891 2.8812 13 1 10.3796 -0.4965 2.3030 14 6 10.1022 0.1810 4.3205 15 1 9.4735 -0.2187 5.1024 16 6 11.3076 0.7700 4.6385 17 7 11.6917 0.8453 5.8941 18 14 12.3950 1.4612 3.2860 19 1 12.0451 2.8847 3.0485 20 1 13.8187 1.3634 3.6970 21 1 12.1858 0.6851 2.0374 22 6 8.2481 -0.5290 2.7835 23 6 3.5806 -1.1971 -0.0075 24 6 2.1982 -1.1972 -0.0017 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6582 2.1325 0.0004 29 1 4.1205 2.1324 -0.0010 30 1 6.1416 0.8902 -0.5165 31 1 6.1416 -0.8898 -0.5173 32 1 5.8944 0.7804 1.8988 33 1 7.5203 2.1440 1.6852 34 1 8.5761 1.6768 0.3227 35 1 9.3397 2.2295 3.0658 36 1 10.3961 1.7618 1.7038 37 1 12.5395 1.2600 6.1178 38 1 8.3009 -1.6177 2.7814 39 1 7.6146 -0.1735 3.5963 40 1 4.1205 -2.1324 -0.0128 41 1 1.6582 -2.1324 -0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:28 Heat of formation + Delta-G solvation = 5.013957 kcal Electronic energy + Delta-G solvation = -18592.546212 eV Core-core repulsion = 15856.972057 eV Total energy + Delta-G solvation = -2735.574155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.58893 -38.01608 -35.01854 -32.83320 -31.76758 -31.00183 -28.69257 -28.18568 -26.45686 -23.88537 -22.97068 -22.78738 -20.79998 -19.89689 -19.11191 -16.66262 -16.29789 -15.70642 -15.32753 -15.19183 -14.85294 -14.11213 -13.96632 -13.77335 -13.51080 -13.20607 -12.85975 -12.49678 -12.42942 -12.33972 -12.20621 -11.85759 -11.56241 -11.17373 -10.99480 -10.90344 -10.69780 -10.29201 -9.98335 -9.94161 -9.70820 -9.35887 -8.99505 -8.92342 -8.64295 -8.50973 -8.04354 -6.02712 -4.00677 1.22686 1.33774 3.31096 3.39835 3.41768 3.62617 4.45791 4.52801 4.67700 4.72339 4.90592 4.93566 5.05695 5.23866 5.34426 5.35207 5.39796 5.41622 5.51383 5.56633 5.61991 5.65767 5.71138 5.98937 6.00689 6.03651 6.27658 6.32449 6.40258 6.47567 6.48571 6.58338 6.60848 6.76664 6.85526 6.93626 6.96801 7.22772 7.37265 7.62213 7.64171 7.84869 8.59573 9.02532 9.60736 11.10838 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.046971 B = 0.003463 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.969926 B = 8083.503516 C = 8208.153588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.122 4.122 4 C -0.111 4.111 5 C -0.081 4.081 6 C 0.096 3.904 7 N -0.676 5.676 8 C 0.079 3.921 9 H 0.074 0.926 10 C -0.147 4.147 11 C -0.129 4.129 12 C 0.010 3.990 13 H 0.029 0.971 14 C -0.506 4.506 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.265 1.265 22 C -0.088 4.088 23 C -0.094 4.094 24 C -0.123 4.123 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.341 0.659 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.655 -0.431 -14.779 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.130 4.130 5 C -0.082 4.082 6 C -0.033 4.033 7 N -0.306 5.306 8 C -0.031 4.031 9 H 0.093 0.907 10 C -0.186 4.186 11 C -0.168 4.168 12 C -0.009 4.009 13 H 0.047 0.953 14 C -0.544 4.544 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.710 3.290 19 H -0.205 1.205 20 H -0.222 1.222 21 H -0.190 1.190 22 C -0.126 4.126 23 C -0.113 4.113 24 C -0.141 4.141 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.160 0.840 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.558 -1.057 -14.593 23.632 hybrid contribution 0.957 1.517 -0.900 2.007 sum -17.601 0.460 -15.493 23.453 Atomic orbital electron populations 1.20777 0.91448 1.02690 1.02078 1.19904 0.95918 0.93316 1.00156 1.20970 0.94115 0.97416 1.01541 1.21053 0.94201 0.97614 1.00120 1.19864 0.95468 0.93140 0.99712 1.20905 0.90042 1.01015 0.91334 1.60679 1.08399 1.50174 1.11359 1.22609 0.85257 0.95271 0.99953 0.90735 1.22841 0.99317 0.97371 0.99115 1.22592 0.94920 1.01738 0.97524 1.19961 0.93002 0.91052 0.96892 0.95262 1.21059 1.04402 1.38095 0.90867 0.90827 1.25016 0.97480 0.95689 0.95067 1.69911 1.22207 1.45137 1.17054 0.86908 0.79393 0.79792 0.82897 1.20530 1.22227 1.19030 1.22349 0.97184 0.99025 0.94063 1.21040 0.93841 0.97839 0.98559 1.21027 0.94255 0.97398 1.01414 0.91403 0.91622 0.91675 0.86338 0.86355 0.94661 0.90456 0.84042 0.92712 0.93438 0.91479 0.94173 0.92794 0.92708 0.91602 0.85885 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.00 0.36 -0.45 16 2 C -0.09 -0.91 5.88 -104.62 -0.62 -1.53 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 4 C -0.11 -1.23 9.70 -39.58 -0.38 -1.61 16 5 C -0.08 -0.96 5.39 -104.62 -0.56 -1.53 16 6 C 0.10 1.18 5.66 -4.97 -0.03 1.15 16 7 N -0.68 -9.83 6.33 -106.26 -0.67 -10.50 16 8 C 0.08 1.30 3.15 -66.07 -0.21 1.09 16 9 H 0.07 1.20 7.87 -51.93 -0.41 0.79 16 10 C -0.15 -2.51 6.42 -25.61 -0.16 -2.67 16 11 C -0.13 -2.76 4.65 -25.62 -0.12 -2.88 16 12 C 0.01 0.24 2.30 -90.12 -0.21 0.03 16 13 H 0.03 0.70 7.30 -51.93 -0.38 0.32 16 14 C -0.51 -14.29 8.98 -34.44 -0.31 -14.60 16 15 H 0.07 2.26 8.02 -52.49 -0.42 1.83 16 16 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 17 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 18 Si 0.88 22.02 24.69 -169.99 -4.20 17.83 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.30 -7.41 7.11 56.52 0.40 -7.00 16 21 H -0.27 -6.35 6.35 56.52 0.36 -5.99 16 22 C -0.09 -1.77 5.97 -24.76 -0.15 -1.91 16 23 C -0.09 -1.07 9.70 -39.58 -0.38 -1.45 16 24 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 29 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 31 H 0.08 0.93 8.02 -51.93 -0.42 0.51 16 32 H 0.34 4.92 8.14 -39.29 -0.32 4.60 16 33 H 0.05 0.87 7.58 -51.93 -0.39 0.48 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.53 7.82 -51.93 -0.41 1.12 16 36 H 0.04 0.86 5.73 -51.93 -0.30 0.56 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 40 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -30.27 325.96 -9.68 -39.95 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.86 Total: 2.76 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -3.64 Total: -27.73 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.10 Total: -37.71 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.20 Total: 17.83 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.27 -9.68 -39.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.962 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds