Wall clock time and date at job start Mon Mar 30 2020 06:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38243 * 120.00321 * 2 1 4 4 C 1.38229 * 120.00368 * 180.02562 * 3 2 1 5 5 C 1.38239 * 119.99873 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99922 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47244 * 90.00203 * 6 5 4 8 8 C 1.46891 * 111.00097 * 179.97438 * 7 6 5 9 9 H 1.08998 * 110.43494 * 323.91749 * 8 7 6 10 10 C 1.54274 * 110.48375 * 86.45454 * 8 7 6 11 11 C 1.53874 * 106.59583 * 142.42106 * 10 8 7 12 12 C 1.54261 * 106.60056 * 0.02562 * 11 10 8 13 13 H 1.08999 * 110.48869 * 95.20527 * 12 11 10 14 14 C 1.50702 * 110.48402 * 217.71282 * 12 11 10 15 15 H 1.08002 * 120.00299 * 118.55010 * 14 12 11 16 16 C 1.37884 * 119.99942 * 298.26568 * 14 12 11 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 12 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 12 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.54885 * 104.19644 * 336.38879 * 12 11 10 23 23 C 1.38233 * 120.00045 * 0.25421 * 5 4 3 24 24 C 1.38236 * 120.00015 * 359.49455 * 23 5 4 25 25 H 1.09004 * 109.47279 * 89.99352 * 1 2 3 26 26 H 1.08996 * 109.47193 * 210.00062 * 1 2 3 27 27 H 1.09004 * 109.46739 * 330.00162 * 1 2 3 28 28 H 1.08006 * 119.99457 * 0.02562 * 3 2 1 29 29 H 1.07990 * 120.00289 * 179.97438 * 4 3 2 30 30 H 1.08994 * 109.46682 * 329.99994 * 6 5 4 31 31 H 1.08999 * 109.46601 * 210.00038 * 6 5 4 32 32 H 1.00897 * 111.00018 * 303.95421 * 7 6 5 33 33 H 1.08998 * 110.03110 * 23.13542 * 10 8 7 34 34 H 1.08998 * 110.07045 * 261.72528 * 10 8 7 35 35 H 1.09004 * 110.03230 * 240.71337 * 11 10 8 36 36 H 1.09007 * 110.07012 * 119.30855 * 11 10 8 37 37 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 38 38 H 1.09002 * 110.75604 * 156.26006 * 22 12 11 39 39 H 1.09004 * 110.75942 * 279.62814 * 22 12 11 40 40 H 1.08001 * 120.00169 * 179.72481 * 23 5 4 41 41 H 1.08000 * 120.00355 * 180.23373 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 7 6.2695 -0.0007 1.3818 8 6 7.7379 -0.0013 1.4199 9 1 8.1395 -0.6027 0.6043 10 6 8.2805 1.4409 1.3450 11 6 9.5055 1.4984 2.2745 12 6 9.6649 0.0891 2.8812 13 1 10.3796 -0.4965 2.3030 14 6 10.1022 0.1810 4.3205 15 1 9.4735 -0.2187 5.1024 16 6 11.3076 0.7700 4.6385 17 7 11.6917 0.8453 5.8941 18 14 12.3950 1.4612 3.2860 19 1 12.0451 2.8847 3.0485 20 1 13.8187 1.3634 3.6970 21 1 12.1858 0.6851 2.0374 22 6 8.2481 -0.5290 2.7835 23 6 3.5806 -1.1971 -0.0075 24 6 2.1982 -1.1972 -0.0017 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6582 2.1325 0.0004 29 1 4.1205 2.1324 -0.0010 30 1 6.1416 0.8902 -0.5165 31 1 6.1416 -0.8898 -0.5173 32 1 5.8944 0.7804 1.8988 33 1 7.5203 2.1440 1.6852 34 1 8.5761 1.6768 0.3227 35 1 9.3397 2.2295 3.0658 36 1 10.3961 1.7618 1.7038 37 1 12.5395 1.2600 6.1178 38 1 8.3009 -1.6177 2.7814 39 1 7.6146 -0.1735 3.5963 40 1 4.1205 -2.1324 -0.0128 41 1 1.6582 -2.1324 -0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449446393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:27 Heat of formation + Delta-G solvation = -12.676610 kcal Electronic energy + Delta-G solvation = -18593.313333 eV Core-core repulsion = 15856.972057 eV Total energy + Delta-G solvation = -2736.341276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.41794 -39.43370 -36.25915 -34.49349 -33.15781 -31.76673 -30.16833 -29.55376 -27.72201 -25.31232 -24.31423 -23.56613 -21.64698 -21.29793 -20.91467 -18.66932 -17.34482 -16.73337 -16.64776 -16.36154 -15.98507 -15.51651 -15.28402 -14.80301 -14.51586 -14.31895 -14.19192 -14.11107 -13.63304 -13.55362 -13.15216 -12.90953 -12.70386 -12.63561 -12.39594 -12.10985 -11.89492 -11.76829 -11.66035 -11.55550 -11.47949 -11.14296 -10.95567 -10.71128 -9.77865 -9.46837 -9.16618 -8.28131 -6.31004 0.43566 0.55433 1.32527 1.35816 1.46381 2.34995 2.80743 3.07113 3.43132 3.85603 3.91161 3.98905 4.01784 4.14499 4.16010 4.20072 4.35347 4.58956 4.62171 4.69689 4.71730 4.73237 4.85975 4.89790 4.90902 4.92243 5.01711 5.03092 5.08138 5.21331 5.24721 5.32141 5.35945 5.51110 5.54831 5.65831 5.74664 5.77322 5.82833 6.14567 6.21759 6.35010 6.49672 6.76321 7.34175 8.89217 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.046971 B = 0.003463 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.969926 B = 8083.503516 C = 8208.153588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.120 4.120 5 C -0.097 4.097 6 C 0.101 3.899 7 N -0.681 5.681 8 C 0.094 3.906 9 H 0.088 0.912 10 C -0.137 4.137 11 C -0.128 4.128 12 C 0.004 3.996 13 H 0.029 0.971 14 C -0.513 4.513 15 H 0.029 0.971 16 C 0.008 3.992 17 N -0.955 5.955 18 Si 0.947 3.053 19 H -0.266 1.266 20 H -0.296 1.296 21 H -0.243 1.243 22 C -0.086 4.086 23 C -0.108 4.108 24 C -0.133 4.133 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.136 0.864 29 H 0.127 0.873 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.342 0.658 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.264 0.736 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.125 0.875 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.852 0.237 -17.722 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.139 4.139 5 C -0.098 4.098 6 C -0.027 4.027 7 N -0.311 5.311 8 C -0.016 4.016 9 H 0.107 0.893 10 C -0.177 4.177 11 C -0.167 4.167 12 C -0.015 4.015 13 H 0.047 0.953 14 C -0.551 4.551 15 H 0.047 0.953 16 C -0.188 4.188 17 N -0.596 5.596 18 Si 0.772 3.228 19 H -0.192 1.192 20 H -0.223 1.223 21 H -0.167 1.167 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.151 4.151 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.145 0.855 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.160 0.840 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.143 0.857 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.787 -0.397 -17.557 26.456 hybrid contribution 1.213 1.240 0.116 1.739 sum -18.573 0.844 -17.440 25.492 Atomic orbital electron populations 1.20825 0.89566 1.03473 1.03021 1.20280 0.97450 0.93080 0.99036 1.21266 0.94064 0.98431 1.01194 1.21242 0.94800 0.97754 1.00075 1.19880 0.95197 0.93668 1.01033 1.20894 0.90471 1.01607 0.89754 1.60570 1.06947 1.50422 1.13133 1.22351 0.86615 0.94941 0.97668 0.89337 1.22778 0.97537 0.97913 0.99432 1.22443 0.97365 0.99120 0.97745 1.19939 0.94733 0.93170 0.93674 0.95285 1.21385 1.03872 1.37110 0.92725 0.95315 1.25927 0.99175 0.96212 0.97511 1.70071 1.23050 1.46866 1.19613 0.85849 0.76842 0.79768 0.80359 1.19156 1.22338 1.16675 1.22231 0.95229 0.98849 0.96090 1.21209 0.94555 0.97940 0.98980 1.21295 0.94094 0.98469 1.01195 0.90278 0.90912 0.90878 0.84578 0.85478 0.93704 0.90083 0.83971 0.91530 0.90758 0.93709 0.93681 0.92690 0.92826 0.93463 0.85673 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.23 0.71 -0.61 16 2 C -0.10 -1.73 5.88 -19.86 -0.12 -1.85 16 3 C -0.13 -2.40 9.70 22.27 0.22 -2.18 16 4 C -0.12 -2.42 9.70 22.27 0.22 -2.20 16 5 C -0.10 -2.13 5.39 -19.86 -0.11 -2.23 16 6 C 0.10 2.24 5.66 85.56 0.48 2.72 16 7 N -0.68 -18.39 6.33 -490.09 -3.10 -21.50 16 8 C 0.09 2.89 3.15 45.99 0.15 3.04 16 9 H 0.09 2.53 7.87 -2.39 -0.02 2.51 16 10 C -0.14 -4.24 6.42 31.32 0.20 -4.04 16 11 C -0.13 -5.24 4.65 31.32 0.15 -5.09 16 12 C 0.00 0.19 2.30 -10.47 -0.02 0.17 16 13 H 0.03 1.36 7.30 -2.39 -0.02 1.34 16 14 C -0.51 -29.94 8.98 25.60 0.23 -29.71 16 15 H 0.03 1.87 8.02 -2.91 -0.02 1.84 16 16 C 0.01 0.47 5.46 84.66 0.46 0.93 16 17 N -0.96 -61.16 13.96 21.45 0.30 -60.86 16 18 Si 0.95 45.26 24.69 68.60 1.69 46.96 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 21 H -0.24 -10.67 6.35 99.48 0.63 -10.04 16 22 C -0.09 -3.41 5.97 31.87 0.19 -3.22 16 23 C -0.11 -2.30 9.70 22.27 0.22 -2.08 16 24 C -0.13 -2.49 9.70 22.27 0.22 -2.28 16 25 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 27 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 28 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 29 H 0.13 2.23 8.06 -2.92 -0.02 2.21 16 30 H 0.04 0.92 8.06 -2.39 -0.02 0.90 16 31 H 0.08 1.73 8.02 -2.39 -0.02 1.71 16 32 H 0.34 9.23 8.14 -89.70 -0.73 8.50 16 33 H 0.07 1.91 7.58 -2.39 -0.02 1.90 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 2.00 7.82 -2.38 -0.02 1.98 16 36 H 0.04 1.78 5.73 -2.38 -0.01 1.77 16 37 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 2.03 8.05 -2.38 -0.02 2.01 16 40 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 41 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -66.92 325.96 2.26 -64.65 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.19 Total: 19.39 kcal Atomic # 6 Polarization: -51.83 SS G_CDS: 3.19 Total: -48.65 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -2.80 Total: -82.35 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.69 Total: 46.96 kcal Total: -66.92 2.26 -64.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.975 kcal (2) G-P(sol) polarization free energy of solvation -66.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds