Wall clock time and date at job start Mon Mar 30 2020 07:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 C 1.52998 * 109.47262 * 120.00468 * 2 1 3 5 5 H 1.09004 * 112.90430 * 288.74855 * 4 2 1 6 6 C 1.53779 * 113.61643 * 157.49877 * 4 2 1 7 7 C 1.53786 * 87.08182 * 220.01646 * 6 4 2 8 8 C 1.53784 * 87.08030 * 25.43223 * 7 6 4 9 9 H 1.08996 * 113.61281 * 219.93879 * 8 7 6 10 10 N 1.46500 * 113.61415 * 89.11446 * 8 7 6 11 11 C 1.39688 * 119.99847 * 104.50698 * 10 8 7 12 12 C 1.39337 * 119.94758 * 0.02562 * 11 10 8 13 13 C 1.38481 * 120.41672 * 179.97438 * 12 11 10 14 14 C 1.37690 * 120.33038 * 359.74016 * 13 12 11 15 15 C 1.40752 * 119.88577 * 0.51874 * 14 13 12 16 16 C 1.41410 * 120.20267 * 179.76731 * 15 14 13 17 17 H 1.08004 * 119.99825 * 335.24876 * 16 15 14 18 18 C 1.39922 * 120.00068 * 154.98044 * 16 15 14 19 19 N 1.30833 * 119.99983 * 342.52983 * 18 16 15 20 20 Si 1.86806 * 120.00056 * 162.53459 * 18 16 15 21 21 H 1.48495 * 109.47083 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47241 * 119.99658 * 20 18 16 23 23 H 1.48510 * 109.46605 * 239.99725 * 20 18 16 24 24 C 1.38275 * 119.94859 * 179.97438 * 11 10 8 25 25 H 1.08995 * 109.47183 * 60.00090 * 1 2 3 26 26 H 1.09004 * 109.46877 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47200 * 299.99555 * 1 2 3 28 28 H 1.09005 * 109.47067 * 240.00646 * 2 1 3 29 29 H 1.09001 * 109.46578 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47571 * 300.00133 * 3 2 1 31 31 H 1.09005 * 109.46681 * 60.00410 * 3 2 1 32 32 H 1.08998 * 113.61990 * 105.46910 * 6 4 2 33 33 H 1.09001 * 113.69110 * 334.57494 * 6 4 2 34 34 H 1.08995 * 113.61300 * 270.88377 * 7 6 4 35 35 H 1.08998 * 113.69109 * 139.98831 * 7 6 4 36 36 H 0.97002 * 120.00523 * 284.50170 * 10 8 7 37 37 H 1.07995 * 119.78995 * 0.02562 * 12 11 10 38 38 H 1.08007 * 119.83079 * 179.97438 * 13 12 11 39 39 H 1.07994 * 120.05386 * 180.27377 * 14 13 12 40 40 H 0.96998 * 119.99606 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.16421 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.8772 -0.1518 2.1642 6 6 3.4727 -1.2617 1.1067 7 6 2.9922 -2.5119 1.8626 8 6 1.5811 -2.1860 1.3453 9 1 0.7965 -2.3514 2.0836 10 7 1.2776 -2.7923 0.0467 11 6 0.4388 -3.9070 -0.0247 12 6 -0.1090 -4.4410 1.1399 13 6 -0.9422 -5.5455 1.0803 14 6 -1.2428 -6.1252 -0.1319 15 6 -0.6924 -5.6000 -1.3161 16 6 -0.9927 -6.1931 -2.5642 17 1 -1.2876 -7.2310 -2.6119 18 6 -0.9132 -5.4338 -3.7368 19 7 -0.9018 -4.1272 -3.6705 20 14 -0.8236 -6.2857 -5.3969 21 1 -0.8522 -7.7573 -5.2003 22 1 -1.9836 -5.8742 -6.2277 23 1 0.4370 -5.9026 -6.0823 24 6 0.1525 -4.4781 -1.2510 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 4.2152 -0.6799 1.6527 33 1 3.7653 -1.4605 0.0757 34 1 3.0897 -2.4318 2.9452 35 1 3.3970 -3.4442 1.4689 36 1 1.6590 -2.4196 -0.7636 37 1 0.1170 -3.9902 2.0949 38 1 -1.3613 -5.9520 1.9890 39 1 -1.8966 -6.9837 -0.1735 40 1 -0.8471 -3.6009 -4.4835 41 1 0.5756 -4.0642 -2.1544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449696141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:23 Heat of formation + Delta-G solvation = 24.921880 kcal Electronic energy + Delta-G solvation = -19529.004108 eV Core-core repulsion = 16794.293225 eV Total energy + Delta-G solvation = -2734.710883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.74899 -37.30134 -34.25073 -33.64214 -32.51789 -29.39462 -27.75813 -26.74581 -25.35569 -25.07166 -24.17526 -21.03716 -20.36173 -20.31215 -18.46365 -17.00857 -16.29735 -15.31279 -15.00874 -14.54060 -14.34948 -14.08698 -13.62125 -13.36372 -12.73304 -12.63670 -12.56620 -12.14873 -12.08762 -11.93575 -11.84228 -11.49244 -11.17579 -11.01331 -10.89248 -10.76521 -10.53523 -10.46006 -10.34659 -9.91542 -9.72659 -9.56637 -9.35526 -9.16879 -8.67177 -7.26367 -6.69313 -6.10585 -4.27397 2.88372 3.12103 3.17858 3.26894 3.36370 4.00580 4.27718 4.69350 4.73742 4.86237 4.93751 5.17925 5.26473 5.41570 5.53859 5.70673 5.81474 5.86473 5.88073 5.94618 5.99954 6.04749 6.12819 6.22501 6.29451 6.37240 6.39397 6.43189 6.62838 6.67149 6.71233 6.94452 7.16431 7.18399 7.43276 7.49164 7.86884 8.00658 8.16324 8.22113 8.54003 8.76789 8.88826 9.05406 9.16517 10.29210 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.005873 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.673440 B = 4766.719021 C = 5532.579137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.144 4.144 4 C -0.115 4.115 5 H 0.090 0.910 6 C -0.133 4.133 7 C -0.165 4.165 8 C 0.151 3.849 9 H 0.083 0.917 10 N -0.735 5.735 11 C 0.218 3.782 12 C -0.298 4.298 13 C -0.067 4.067 14 C -0.258 4.258 15 C 0.139 3.861 16 C -0.465 4.465 17 H 0.075 0.925 18 C 0.078 3.922 19 N -0.792 5.792 20 Si 0.902 3.098 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.274 1.274 24 C -0.230 4.230 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.390 0.610 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.276 0.724 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.127 8.301 5.633 11.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.201 4.201 4 C -0.134 4.134 5 H 0.109 0.891 6 C -0.171 4.171 7 C -0.205 4.205 8 C 0.042 3.958 9 H 0.101 0.899 10 N -0.367 5.367 11 C 0.119 3.881 12 C -0.320 4.320 13 C -0.086 4.086 14 C -0.278 4.278 15 C 0.136 3.864 16 C -0.495 4.495 17 H 0.094 0.906 18 C -0.139 4.139 19 N -0.418 5.418 20 Si 0.727 3.273 21 H -0.185 1.185 22 H -0.202 1.202 23 H -0.199 1.199 24 C -0.254 4.254 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.224 0.776 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.099 8.524 5.659 11.911 hybrid contribution 0.182 -0.098 -1.058 1.078 sum 6.281 8.425 4.601 11.472 Atomic orbital electron populations 1.21837 0.94717 1.03449 1.00549 1.20945 0.96287 0.95201 0.97497 1.21818 1.00547 0.96470 1.01291 1.23036 0.96001 0.95823 0.98562 0.89139 1.22907 0.96091 0.97420 1.00640 1.23481 0.99127 0.98351 0.99520 1.21505 0.95161 0.91432 0.87670 0.89884 1.44147 1.54488 1.32528 1.05565 1.17628 0.89825 0.86374 0.94233 1.19923 1.12554 1.04492 0.95072 1.20289 0.96939 0.95376 0.95972 1.20859 1.08604 1.05418 0.92969 1.17319 0.87183 0.89941 0.92002 1.19575 1.41191 0.98025 0.90721 0.90640 1.25855 0.92349 0.94542 1.01153 1.69876 1.35849 1.05803 1.30275 0.86367 0.78426 0.80929 0.81572 1.18489 1.20156 1.19897 1.20710 1.07224 1.03215 0.94228 0.93342 0.90742 0.93600 0.91383 0.93091 0.93042 0.93079 0.92210 0.90483 0.90459 0.91150 0.77578 0.89520 0.89757 0.89503 0.91335 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.95 37.16 0.33 -1.81 16 2 C -0.08 -1.04 2.14 -90.62 -0.19 -1.23 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 4 C -0.11 -1.45 3.09 -89.81 -0.28 -1.72 16 5 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 6 C -0.13 -1.61 7.52 -25.92 -0.19 -1.81 16 7 C -0.17 -2.25 7.88 -25.91 -0.20 -2.45 16 8 C 0.15 2.31 3.25 -67.11 -0.22 2.09 16 9 H 0.08 1.35 6.25 -51.93 -0.32 1.03 16 10 N -0.74 -13.59 3.92 -51.43 -0.20 -13.80 16 11 C 0.22 4.99 6.64 -83.86 -0.56 4.43 16 12 C -0.30 -6.74 9.27 -39.08 -0.36 -7.10 16 13 C -0.07 -1.55 10.01 -39.69 -0.40 -1.95 16 14 C -0.26 -6.56 9.79 -38.83 -0.38 -6.95 16 15 C 0.14 3.78 5.57 -106.85 -0.60 3.18 16 16 C -0.47 -12.63 9.05 -37.74 -0.34 -12.97 16 17 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 18 C 0.08 2.00 5.15 -17.35 -0.09 1.91 16 19 N -0.79 -20.65 10.95 55.55 0.61 -20.04 16 20 Si 0.90 19.02 29.59 -169.99 -5.03 13.98 16 21 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.23 -5.97 8.53 -38.68 -0.33 -6.30 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.30 6.57 -51.93 -0.34 0.96 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.95 6.59 -51.93 -0.34 0.61 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.98 7.97 -51.93 -0.41 0.56 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.39 7.06 7.08 -40.82 -0.29 6.77 16 37 H 0.09 1.77 6.08 -52.49 -0.32 1.46 16 38 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 39 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 41 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 LS Contribution 324.11 15.07 4.88 4.88 Total: -1.00 -27.07 324.11 -9.76 -36.83 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -6.55 Total: 12.03 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: -3.47 Total: -33.89 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.41 Total: -33.83 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.07 -9.76 -36.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449696141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.748 kcal (2) G-P(sol) polarization free energy of solvation -27.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds