Wall clock time and date at job start Mon Mar 30 2020 07:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 C 1.52998 * 109.47262 * 120.00468 * 2 1 3 5 5 H 1.09004 * 112.90430 * 288.74855 * 4 2 1 6 6 C 1.53779 * 113.61643 * 157.49877 * 4 2 1 7 7 C 1.53786 * 87.08182 * 220.01646 * 6 4 2 8 8 C 1.53784 * 87.08030 * 25.43223 * 7 6 4 9 9 H 1.08996 * 113.61281 * 219.93879 * 8 7 6 10 10 N 1.46500 * 113.61415 * 89.11446 * 8 7 6 11 11 C 1.39688 * 119.99847 * 104.50698 * 10 8 7 12 12 C 1.39337 * 119.94758 * 0.02562 * 11 10 8 13 13 C 1.38481 * 120.41672 * 179.97438 * 12 11 10 14 14 C 1.37690 * 120.33038 * 359.74016 * 13 12 11 15 15 C 1.40752 * 119.88577 * 0.51874 * 14 13 12 16 16 C 1.41410 * 120.20267 * 179.76731 * 15 14 13 17 17 H 1.08004 * 119.99825 * 335.24876 * 16 15 14 18 18 C 1.39922 * 120.00068 * 154.98044 * 16 15 14 19 19 N 1.30833 * 119.99983 * 342.52983 * 18 16 15 20 20 Si 1.86806 * 120.00056 * 162.53459 * 18 16 15 21 21 H 1.48495 * 109.47083 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47241 * 119.99658 * 20 18 16 23 23 H 1.48510 * 109.46605 * 239.99725 * 20 18 16 24 24 C 1.38275 * 119.94859 * 179.97438 * 11 10 8 25 25 H 1.08995 * 109.47183 * 60.00090 * 1 2 3 26 26 H 1.09004 * 109.46877 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47200 * 299.99555 * 1 2 3 28 28 H 1.09005 * 109.47067 * 240.00646 * 2 1 3 29 29 H 1.09001 * 109.46578 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47571 * 300.00133 * 3 2 1 31 31 H 1.09005 * 109.46681 * 60.00410 * 3 2 1 32 32 H 1.08998 * 113.61990 * 105.46910 * 6 4 2 33 33 H 1.09001 * 113.69110 * 334.57494 * 6 4 2 34 34 H 1.08995 * 113.61300 * 270.88377 * 7 6 4 35 35 H 1.08998 * 113.69109 * 139.98831 * 7 6 4 36 36 H 0.97002 * 120.00523 * 284.50170 * 10 8 7 37 37 H 1.07995 * 119.78995 * 0.02562 * 12 11 10 38 38 H 1.08007 * 119.83079 * 179.97438 * 13 12 11 39 39 H 1.07994 * 120.05386 * 180.27377 * 14 13 12 40 40 H 0.96998 * 119.99606 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.16421 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.8772 -0.1518 2.1642 6 6 3.4727 -1.2617 1.1067 7 6 2.9922 -2.5119 1.8626 8 6 1.5811 -2.1860 1.3453 9 1 0.7965 -2.3514 2.0836 10 7 1.2776 -2.7923 0.0467 11 6 0.4388 -3.9070 -0.0247 12 6 -0.1090 -4.4410 1.1399 13 6 -0.9422 -5.5455 1.0803 14 6 -1.2428 -6.1252 -0.1319 15 6 -0.6924 -5.6000 -1.3161 16 6 -0.9927 -6.1931 -2.5642 17 1 -1.2876 -7.2310 -2.6119 18 6 -0.9132 -5.4338 -3.7368 19 7 -0.9018 -4.1272 -3.6705 20 14 -0.8236 -6.2857 -5.3969 21 1 -0.8522 -7.7573 -5.2003 22 1 -1.9836 -5.8742 -6.2277 23 1 0.4370 -5.9026 -6.0823 24 6 0.1525 -4.4781 -1.2510 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 4.2152 -0.6799 1.6527 33 1 3.7653 -1.4605 0.0757 34 1 3.0897 -2.4318 2.9452 35 1 3.3970 -3.4442 1.4689 36 1 1.6590 -2.4196 -0.7636 37 1 0.1170 -3.9902 2.0949 38 1 -1.3613 -5.9520 1.9890 39 1 -1.8966 -6.9837 -0.1735 40 1 -0.8471 -3.6009 -4.4835 41 1 0.5756 -4.0642 -2.1544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449696141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:22 Heat of formation + Delta-G solvation = 12.869970 kcal Electronic energy + Delta-G solvation = -19529.526718 eV Core-core repulsion = 16794.293225 eV Total energy + Delta-G solvation = -2735.233493 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.97234 -39.08409 -35.83609 -35.04371 -34.14932 -31.32757 -29.38310 -27.88071 -27.15900 -26.23460 -25.45330 -22.85864 -22.04132 -21.45794 -19.89036 -18.73934 -17.90050 -16.77066 -16.64066 -16.17239 -15.77468 -15.22209 -15.14618 -14.66659 -14.30351 -14.20646 -13.95632 -13.72988 -13.57613 -13.15238 -13.01292 -12.84864 -12.75142 -12.63963 -12.45370 -12.12070 -11.99640 -11.82635 -11.53687 -11.48898 -11.22980 -11.15884 -10.92512 -10.79215 -10.31753 -9.22702 -8.60614 -7.84269 -6.30706 1.09006 1.35583 1.38092 1.52591 1.57803 2.23270 2.79342 2.84663 3.59336 3.77375 3.87438 3.89198 4.11226 4.23031 4.37908 4.52723 4.54991 4.63990 4.72447 4.83182 4.86973 4.90819 5.00391 5.01310 5.07609 5.08893 5.17659 5.21070 5.27273 5.32326 5.35275 5.37923 5.49824 5.52886 5.55959 5.69877 5.99423 6.13862 6.23650 6.31534 6.61253 6.97244 7.07808 7.11119 7.28607 8.39441 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020453 B = 0.005873 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.673440 B = 4766.719021 C = 5532.579137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.138 4.138 4 C -0.100 4.100 5 H 0.114 0.886 6 C -0.123 4.123 7 C -0.159 4.159 8 C 0.131 3.869 9 H 0.076 0.924 10 N -0.726 5.726 11 C 0.227 3.773 12 C -0.301 4.301 13 C -0.064 4.064 14 C -0.287 4.287 15 C 0.109 3.891 16 C -0.505 4.505 17 H 0.069 0.931 18 C 0.038 3.962 19 N -0.821 5.821 20 Si 0.978 3.022 21 H -0.260 1.260 22 H -0.266 1.266 23 H -0.265 1.265 24 C -0.258 4.258 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.390 0.610 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.284 0.716 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.328 9.832 6.699 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.195 4.195 4 C -0.119 4.119 5 H 0.132 0.868 6 C -0.161 4.161 7 C -0.198 4.198 8 C 0.024 3.976 9 H 0.094 0.906 10 N -0.357 5.357 11 C 0.125 3.875 12 C -0.323 4.323 13 C -0.082 4.082 14 C -0.308 4.308 15 C 0.106 3.894 16 C -0.535 4.535 17 H 0.088 0.912 18 C -0.177 4.177 19 N -0.447 5.447 20 Si 0.799 3.201 21 H -0.184 1.184 22 H -0.191 1.191 23 H -0.190 1.190 24 C -0.282 4.282 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.224 0.776 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.322 10.088 6.756 14.178 hybrid contribution -0.187 -0.492 -1.264 1.369 sum 7.134 9.596 5.492 13.159 Atomic orbital electron populations 1.21777 0.96043 1.01168 1.01164 1.20916 0.95031 0.96807 0.97073 1.21758 1.01218 0.94594 1.01951 1.23005 0.95817 0.93859 0.99260 0.86838 1.22845 0.96333 0.96641 1.00263 1.23460 0.97203 0.98158 1.01023 1.21824 0.96094 0.93827 0.85833 0.90605 1.44174 1.53140 1.31128 1.07227 1.17711 0.89428 0.86890 0.93435 1.20254 1.11892 1.04223 0.95953 1.20646 0.96217 0.95015 0.96346 1.21006 1.09845 1.06366 0.93601 1.17706 0.87926 0.90876 0.92915 1.19808 1.43433 0.98158 0.92078 0.91245 1.26678 0.91322 0.95094 1.04588 1.69934 1.35953 1.07082 1.31708 0.85236 0.78877 0.79527 0.76481 1.18411 1.19070 1.18952 1.20617 1.08648 1.04148 0.94818 0.93663 0.94336 0.92090 0.93096 0.91950 0.93066 0.91810 0.89625 0.91447 0.88075 0.93183 0.77568 0.86891 0.86576 0.89441 0.90577 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 8.95 71.98 0.64 -3.40 16 2 C -0.08 -1.91 2.14 -10.79 -0.02 -1.93 16 3 C -0.14 -2.59 9.19 71.98 0.66 -1.93 16 4 C -0.10 -2.24 3.09 -10.27 -0.03 -2.27 16 5 H 0.11 2.10 8.14 -2.38 -0.02 2.09 16 6 C -0.12 -2.61 7.52 31.12 0.23 -2.38 16 7 C -0.16 -3.93 7.88 31.12 0.25 -3.68 16 8 C 0.13 3.80 3.25 45.52 0.15 3.95 16 9 H 0.08 2.32 6.25 -2.39 -0.01 2.30 16 10 N -0.73 -26.98 3.92 -316.62 -1.24 -28.22 16 11 C 0.23 10.57 6.64 38.16 0.25 10.82 16 12 C -0.30 -13.44 9.27 22.59 0.21 -13.23 16 13 C -0.06 -2.94 10.01 22.20 0.22 -2.72 16 14 C -0.29 -15.10 9.79 22.76 0.22 -14.88 16 15 C 0.11 6.20 5.57 -21.31 -0.12 6.08 16 16 C -0.50 -28.73 9.05 23.46 0.21 -28.52 16 17 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 18 C 0.04 1.99 5.15 85.25 0.44 2.43 16 19 N -0.82 -44.27 10.95 21.82 0.24 -44.03 16 20 Si 0.98 39.83 29.59 68.60 2.03 41.86 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 23 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 24 C -0.26 -14.00 8.53 22.86 0.19 -13.81 16 25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 1.35 6.57 -2.38 -0.02 1.33 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.40 6.59 -2.38 -0.02 1.38 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.58 7.97 -2.39 -0.02 1.56 16 34 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.39 14.45 7.08 -92.71 -0.66 13.80 16 37 H 0.11 4.41 6.08 -2.91 -0.02 4.39 16 38 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 39 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.28 13.83 8.30 -92.71 -0.77 13.06 16 41 H 0.10 5.55 6.16 -2.91 -0.02 5.53 16 Total: -1.00 -60.97 324.11 4.89 -56.08 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: 0.35 Total: 39.77 kcal Atomic # 6 Polarization: -68.98 SS G_CDS: 3.51 Total: -65.46 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.00 Total: -72.25 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -60.97 4.89 -56.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449696141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.954 kcal (2) G-P(sol) polarization free energy of solvation -60.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds