Wall clock time and date at job start Mon Mar 30 2020 07:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46974 * 2 1 4 4 H 1.08997 * 112.90629 * 316.24956 * 3 2 1 5 5 C 1.53781 * 113.61374 * 87.50217 * 3 2 1 6 6 C 1.53780 * 87.08033 * 139.97789 * 5 3 2 7 7 C 1.53781 * 113.61168 * 184.99924 * 3 2 1 8 8 H 1.09002 * 113.69314 * 334.58150 * 7 3 2 9 9 N 1.46902 * 113.61324 * 105.47067 * 7 3 2 10 10 C 1.46892 * 111.00055 * 202.00078 * 9 7 3 11 11 C 1.50703 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.38629 * 119.75127 * 90.00162 * 11 10 9 13 13 C 1.37624 * 120.24653 * 180.27643 * 12 11 10 14 14 C 1.40716 * 119.74224 * 359.52057 * 13 12 11 15 15 C 1.41396 * 120.23809 * 180.23246 * 14 13 12 16 16 H 1.08004 * 119.99614 * 155.44655 * 15 14 13 17 17 C 1.39940 * 120.00247 * 335.43838 * 15 14 13 18 18 N 1.30823 * 120.00151 * 342.11422 * 17 15 14 19 19 Si 1.86806 * 119.99767 * 162.10433 * 17 15 14 20 20 H 1.48496 * 109.46866 * 94.67188 * 19 17 15 21 21 H 1.48498 * 109.46883 * 214.66477 * 19 17 15 22 22 H 1.48493 * 109.47470 * 334.66957 * 19 17 15 23 23 C 1.40712 * 119.51327 * 0.46996 * 14 13 12 24 24 C 1.37612 * 119.74657 * 359.76314 * 23 14 13 25 25 H 1.09002 * 109.47082 * 59.99745 * 1 2 3 26 26 H 1.08992 * 109.46947 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46917 * 300.00100 * 1 2 3 28 28 H 1.08994 * 109.47066 * 240.00016 * 2 1 3 29 29 H 1.08994 * 109.47330 * 120.00082 * 2 1 3 30 30 H 1.09004 * 113.61204 * 25.43151 * 5 3 2 31 31 H 1.08993 * 113.69129 * 254.54077 * 5 3 2 32 32 H 1.08998 * 113.61917 * 220.01737 * 6 5 3 33 33 H 1.09000 * 113.68617 * 89.12763 * 6 5 3 34 34 H 1.00905 * 110.99821 * 78.04652 * 9 7 3 35 35 H 1.09000 * 109.47154 * 60.00029 * 10 9 7 36 36 H 1.09000 * 109.47392 * 299.99974 * 10 9 7 37 37 H 1.07999 * 119.87639 * 359.97438 * 12 11 10 38 38 H 1.07997 * 120.12681 * 179.71511 * 13 12 11 39 39 H 0.97002 * 120.00064 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.12387 * 179.77536 * 23 14 13 41 41 H 1.08003 * 119.88187 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.4977 2.0843 -0.6943 5 6 2.1875 2.0438 1.4077 6 6 3.4888 2.6935 0.9084 7 6 3.5688 1.5554 -0.1228 8 1 4.1032 0.6764 0.2376 9 7 4.0217 1.9942 -1.4496 10 6 5.4160 1.5977 -1.6876 11 6 5.8445 2.0645 -3.0549 12 6 6.4170 3.3180 -3.2058 13 6 6.8069 3.7568 -4.4506 14 6 6.6318 2.9236 -5.5709 15 6 7.0331 3.3619 -6.8539 16 1 7.2758 2.6400 -7.6197 17 6 7.1157 4.7310 -7.1316 18 7 6.5056 5.5930 -6.3594 19 14 8.0972 5.3277 -8.6047 20 1 7.1895 5.5006 -9.7671 21 1 8.7375 6.6274 -8.2792 22 1 9.1447 4.3297 -8.9388 23 6 6.0498 1.6532 -5.4058 24 6 5.6630 1.2370 -4.1524 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 2.3430 1.2977 2.1870 31 1 1.4090 2.7636 1.6602 32 1 4.2951 2.6758 1.6416 33 1 3.3439 3.6774 0.4624 34 1 3.9052 2.9904 -1.5603 35 1 5.4998 0.5124 -1.6310 36 1 6.0569 2.0515 -0.9317 37 1 6.5530 3.9546 -2.3440 38 1 7.2484 4.7356 -4.5665 39 1 6.5625 6.5420 -6.5521 40 1 5.9074 1.0071 -6.2594 41 1 5.2157 0.2625 -4.0233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516769155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:59 Heat of formation + Delta-G solvation = 15.171671 kcal Electronic energy + Delta-G solvation = -18549.522958 eV Core-core repulsion = 15814.389275 eV Total energy + Delta-G solvation = -2735.133683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.39388 -37.58358 -34.62583 -33.31166 -32.23385 -29.80898 -29.19643 -26.48346 -25.64006 -23.97039 -22.67491 -21.40408 -20.96125 -20.02119 -19.28307 -17.26182 -15.86759 -15.34932 -15.15892 -14.48694 -14.25522 -14.12067 -13.70733 -13.39598 -13.13401 -12.67424 -12.56341 -12.44332 -12.03786 -11.90129 -11.71481 -11.60301 -11.30749 -11.21528 -10.97530 -10.91214 -10.77589 -10.56197 -10.32170 -10.09228 -10.03791 -9.47963 -9.35837 -9.09961 -7.89710 -7.41259 -7.25488 -6.74095 -4.32147 2.76729 3.07696 3.11170 3.12578 3.20848 3.94590 4.44829 4.61858 4.68333 4.78071 4.85394 5.13098 5.23608 5.27685 5.47838 5.62113 5.68918 5.76529 5.79108 5.86608 5.88386 5.92417 5.98703 6.02917 6.11410 6.22344 6.32543 6.36892 6.41221 6.46555 6.54991 6.97751 7.10171 7.31232 7.41370 7.53567 7.65008 7.82901 7.93739 8.08489 8.18284 8.33856 8.67068 8.92582 9.01187 10.20514 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035802 B = 0.003585 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.881606 B = 7809.443325 C = 7981.016719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.098 4.098 4 H 0.092 0.908 5 C -0.137 4.137 6 C -0.173 4.173 7 C 0.071 3.929 8 H 0.091 0.909 9 N -0.673 5.673 10 C 0.125 3.875 11 C -0.214 4.214 12 C -0.096 4.096 13 C -0.166 4.166 14 C 0.112 3.888 15 C -0.464 4.464 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.228 4.228 24 C -0.069 4.069 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.342 0.658 35 H 0.059 0.941 36 H 0.018 0.982 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.279 0.721 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 -4.627 11.560 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.117 4.117 4 H 0.110 0.890 5 C -0.175 4.175 6 C -0.213 4.213 7 C -0.040 4.040 8 H 0.109 0.891 9 N -0.303 5.303 10 C -0.003 4.003 11 C -0.215 4.215 12 C -0.114 4.114 13 C -0.186 4.186 14 C 0.110 3.890 15 C -0.494 4.494 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.419 5.419 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.248 4.248 24 C -0.088 4.088 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.162 0.838 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.469 -4.924 11.240 13.872 hybrid contribution 0.791 1.102 -0.093 1.360 sum -5.678 -3.822 11.147 13.081 Atomic orbital electron populations 1.21747 0.96236 1.01084 1.01611 1.21454 0.95480 0.96237 1.01750 1.22760 0.96261 0.96501 0.96202 0.88993 1.22839 0.97683 0.99942 0.96989 1.23644 0.98087 0.99322 1.00210 1.23116 0.95636 0.97113 0.88139 0.89117 1.60549 1.22289 1.20780 1.26697 1.20568 0.86672 0.98711 0.94321 1.18931 1.12181 0.96984 0.93437 1.20520 0.99945 0.94582 0.96403 1.21264 1.05139 1.01061 0.91100 1.17615 0.87664 0.90657 0.93091 1.19593 1.40355 0.91718 0.97687 0.90516 1.25901 0.93578 0.96892 0.97760 1.69836 1.32084 1.03576 1.36365 0.86342 0.80624 0.78740 0.81269 1.19599 1.20082 1.18451 1.20977 1.08927 0.99325 0.95553 1.20335 0.98475 0.97258 0.92715 0.92704 0.93225 0.93110 0.91535 0.92530 0.90513 0.91774 0.91978 0.90101 0.83845 0.92224 0.96406 0.89977 0.86611 0.90971 0.89142 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.90 37.16 0.37 -1.06 16 2 C -0.11 -1.20 5.77 -26.72 -0.15 -1.35 16 3 C -0.10 -1.14 3.45 -89.80 -0.31 -1.45 16 4 H 0.09 1.18 8.13 -51.93 -0.42 0.76 16 5 C -0.14 -1.39 7.63 -25.92 -0.20 -1.59 16 6 C -0.17 -1.99 7.71 -25.92 -0.20 -2.19 16 7 C 0.07 0.93 3.71 -66.90 -0.25 0.68 16 8 H 0.09 1.17 7.85 -51.93 -0.41 0.76 16 9 N -0.67 -10.95 6.60 -107.13 -0.71 -11.66 16 10 C 0.12 2.22 5.66 -4.98 -0.03 2.19 16 11 C -0.21 -4.66 5.41 -104.33 -0.56 -5.23 16 12 C -0.10 -2.23 9.67 -39.66 -0.38 -2.61 16 13 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 14 C 0.11 3.03 5.57 -106.83 -0.60 2.44 16 15 C -0.46 -12.47 9.05 -37.74 -0.34 -12.82 16 16 H 0.08 1.99 7.91 -52.48 -0.42 1.57 16 17 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 18 N -0.79 -20.68 10.97 55.55 0.61 -20.07 16 19 Si 0.91 18.78 29.60 -169.99 -5.03 13.75 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 23 C -0.23 -5.72 9.80 -38.88 -0.38 -6.10 16 24 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.56 7.84 -51.93 -0.41 0.15 16 30 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.96 7.83 -51.93 -0.41 0.56 16 34 H 0.34 5.74 8.21 -39.29 -0.32 5.42 16 35 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 36 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 16 37 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.12 3.13 6.17 -52.49 -0.32 2.80 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -26.80 334.64 -10.83 -37.63 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.89 Total: 9.20 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: -3.85 Total: -33.89 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: -0.10 Total: -31.73 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.80 -10.83 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516769155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.799 kcal (2) G-P(sol) polarization free energy of solvation -26.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds