Wall clock time and date at job start Mon Mar 30 2020 07:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46974 * 2 1 4 4 H 1.08997 * 112.90629 * 316.24956 * 3 2 1 5 5 C 1.53781 * 113.61374 * 87.50217 * 3 2 1 6 6 C 1.53780 * 87.08033 * 139.97789 * 5 3 2 7 7 C 1.53781 * 113.61168 * 184.99924 * 3 2 1 8 8 H 1.09002 * 113.69314 * 334.58150 * 7 3 2 9 9 N 1.46902 * 113.61324 * 105.47067 * 7 3 2 10 10 C 1.46892 * 111.00055 * 202.00078 * 9 7 3 11 11 C 1.50703 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.38629 * 119.75127 * 90.00162 * 11 10 9 13 13 C 1.37624 * 120.24653 * 180.27643 * 12 11 10 14 14 C 1.40716 * 119.74224 * 359.52057 * 13 12 11 15 15 C 1.41396 * 120.23809 * 180.23246 * 14 13 12 16 16 H 1.08004 * 119.99614 * 155.44655 * 15 14 13 17 17 C 1.39940 * 120.00247 * 335.43838 * 15 14 13 18 18 N 1.30823 * 120.00151 * 342.11422 * 17 15 14 19 19 Si 1.86806 * 119.99767 * 162.10433 * 17 15 14 20 20 H 1.48496 * 109.46866 * 94.67188 * 19 17 15 21 21 H 1.48498 * 109.46883 * 214.66477 * 19 17 15 22 22 H 1.48493 * 109.47470 * 334.66957 * 19 17 15 23 23 C 1.40712 * 119.51327 * 0.46996 * 14 13 12 24 24 C 1.37612 * 119.74657 * 359.76314 * 23 14 13 25 25 H 1.09002 * 109.47082 * 59.99745 * 1 2 3 26 26 H 1.08992 * 109.46947 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46917 * 300.00100 * 1 2 3 28 28 H 1.08994 * 109.47066 * 240.00016 * 2 1 3 29 29 H 1.08994 * 109.47330 * 120.00082 * 2 1 3 30 30 H 1.09004 * 113.61204 * 25.43151 * 5 3 2 31 31 H 1.08993 * 113.69129 * 254.54077 * 5 3 2 32 32 H 1.08998 * 113.61917 * 220.01737 * 6 5 3 33 33 H 1.09000 * 113.68617 * 89.12763 * 6 5 3 34 34 H 1.00905 * 110.99821 * 78.04652 * 9 7 3 35 35 H 1.09000 * 109.47154 * 60.00029 * 10 9 7 36 36 H 1.09000 * 109.47392 * 299.99974 * 10 9 7 37 37 H 1.07999 * 119.87639 * 359.97438 * 12 11 10 38 38 H 1.07997 * 120.12681 * 179.71511 * 13 12 11 39 39 H 0.97002 * 120.00064 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.12387 * 179.77536 * 23 14 13 41 41 H 1.08003 * 119.88187 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.4977 2.0843 -0.6943 5 6 2.1875 2.0438 1.4077 6 6 3.4888 2.6935 0.9084 7 6 3.5688 1.5554 -0.1228 8 1 4.1032 0.6764 0.2376 9 7 4.0217 1.9942 -1.4496 10 6 5.4160 1.5977 -1.6876 11 6 5.8445 2.0645 -3.0549 12 6 6.4170 3.3180 -3.2058 13 6 6.8069 3.7568 -4.4506 14 6 6.6318 2.9236 -5.5709 15 6 7.0331 3.3619 -6.8539 16 1 7.2758 2.6400 -7.6197 17 6 7.1157 4.7310 -7.1316 18 7 6.5056 5.5930 -6.3594 19 14 8.0972 5.3277 -8.6047 20 1 7.1895 5.5006 -9.7671 21 1 8.7375 6.6274 -8.2792 22 1 9.1447 4.3297 -8.9388 23 6 6.0498 1.6532 -5.4058 24 6 5.6630 1.2370 -4.1524 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8899 30 1 2.3430 1.2977 2.1870 31 1 1.4090 2.7636 1.6602 32 1 4.2951 2.6758 1.6416 33 1 3.3439 3.6774 0.4624 34 1 3.9052 2.9904 -1.5603 35 1 5.4998 0.5124 -1.6310 36 1 6.0569 2.0515 -0.9317 37 1 6.5530 3.9546 -2.3440 38 1 7.2484 4.7356 -4.5665 39 1 6.5625 6.5420 -6.5521 40 1 5.9074 1.0071 -6.2594 41 1 5.2157 0.2625 -4.0233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516769155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:58 Heat of formation + Delta-G solvation = 2.388947 kcal Electronic energy + Delta-G solvation = -18550.077259 eV Core-core repulsion = 15814.389275 eV Total energy + Delta-G solvation = -2735.687984 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41034 -39.38900 -36.21530 -34.87189 -33.24174 -31.54826 -31.09088 -28.14532 -26.51139 -25.38847 -23.96616 -22.87581 -22.31546 -21.68537 -20.37586 -19.20698 -17.29341 -16.84114 -16.33653 -15.92046 -15.67472 -15.43452 -15.20704 -14.88449 -14.32994 -14.15922 -13.80095 -13.61337 -13.48474 -13.41566 -13.07621 -12.90372 -12.73944 -12.62980 -12.47513 -12.19426 -12.06865 -11.98906 -11.56050 -11.43455 -11.27211 -11.04013 -10.94328 -10.86596 -9.37326 -9.22843 -9.04878 -8.62988 -6.32207 0.95839 1.16959 1.37693 1.48478 1.54300 2.21130 2.70324 3.41090 3.70523 3.78766 3.87434 3.93365 4.08252 4.32220 4.38897 4.42342 4.45773 4.61772 4.65520 4.70338 4.74599 4.82485 4.85907 4.93374 5.05774 5.07339 5.09411 5.17386 5.21117 5.25979 5.38424 5.40779 5.49277 5.49513 5.63331 5.72761 5.97909 6.11585 6.24936 6.34724 6.41601 6.56071 6.71922 6.95682 7.05798 8.34083 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035802 B = 0.003585 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.881606 B = 7809.443325 C = 7981.016719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.098 4.098 4 H 0.077 0.923 5 C -0.123 4.123 6 C -0.171 4.171 7 C 0.064 3.936 8 H 0.097 0.903 9 N -0.684 5.684 10 C 0.133 3.867 11 C -0.201 4.201 12 C -0.098 4.098 13 C -0.190 4.190 14 C 0.079 3.921 15 C -0.505 4.505 16 H 0.073 0.927 17 C 0.035 3.965 18 N -0.826 5.826 19 Si 0.982 3.018 20 H -0.263 1.263 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.245 4.245 24 C -0.074 4.074 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.337 0.663 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.287 0.713 40 H 0.093 0.907 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 -5.111 13.102 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.117 4.117 4 H 0.095 0.905 5 C -0.161 4.161 6 C -0.210 4.210 7 C -0.046 4.046 8 H 0.115 0.885 9 N -0.313 5.313 10 C 0.005 3.995 11 C -0.202 4.202 12 C -0.117 4.117 13 C -0.209 4.209 14 C 0.077 3.923 15 C -0.534 4.534 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.452 5.452 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.189 1.189 22 H -0.183 1.183 23 C -0.265 4.265 24 C -0.092 4.092 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.958 -5.422 12.803 15.548 hybrid contribution 0.859 1.174 -0.440 1.520 sum -6.098 -4.249 12.364 14.426 Atomic orbital electron populations 1.21726 0.95377 1.01718 1.01656 1.21437 0.96250 0.95458 1.01582 1.22721 0.94979 0.97012 0.97013 0.90510 1.22797 0.96996 1.00060 0.96258 1.23596 0.99187 0.98447 0.99778 1.23273 0.96500 0.97913 0.86891 0.88519 1.60498 1.21058 1.20512 1.29261 1.20472 0.87834 0.99342 0.91867 1.19379 1.09664 0.95831 0.95325 1.20770 0.99319 0.95541 0.96046 1.21244 1.06715 1.00701 0.92281 1.17956 0.88822 0.91801 0.93706 1.19837 1.42658 0.92903 0.98012 0.90886 1.26751 0.93961 0.96401 1.00838 1.69884 1.32946 1.04165 1.38189 0.85210 0.78895 0.78293 0.77397 1.18728 1.18932 1.18330 1.21178 1.09403 0.99062 0.96860 1.20641 0.97957 0.98441 0.92178 0.93604 0.92332 0.92129 0.93165 0.91209 0.88976 0.90913 0.91231 0.90756 0.84402 0.91078 0.95303 0.87883 0.88315 0.90206 0.88855 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.90 71.98 0.71 -1.80 16 2 C -0.11 -2.12 5.77 30.60 0.18 -1.94 16 3 C -0.10 -2.08 3.45 -10.27 -0.04 -2.12 16 4 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 5 C -0.12 -2.14 7.63 31.12 0.24 -1.90 16 6 C -0.17 -3.51 7.71 31.12 0.24 -3.27 16 7 C 0.06 1.53 3.71 45.44 0.17 1.70 16 8 H 0.10 2.21 7.85 -2.39 -0.02 2.19 16 9 N -0.68 -21.08 6.60 -492.86 -3.25 -24.33 16 10 C 0.13 4.44 5.66 85.56 0.48 4.92 16 11 C -0.20 -8.55 5.41 -19.67 -0.11 -8.65 16 12 C -0.10 -4.56 9.67 22.22 0.21 -4.34 16 13 C -0.19 -10.23 8.70 22.73 0.20 -10.03 16 14 C 0.08 4.44 5.57 -21.29 -0.12 4.32 16 15 C -0.50 -28.16 9.05 23.46 0.21 -27.95 16 16 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 17 C 0.04 1.82 5.14 85.26 0.44 2.25 16 18 N -0.83 -44.21 10.97 21.82 0.24 -43.97 16 19 Si 0.98 39.05 29.60 68.60 2.03 41.08 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 22 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 23 C -0.25 -12.56 9.80 22.73 0.22 -12.34 16 24 C -0.07 -3.33 9.67 22.22 0.21 -3.11 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.16 7.84 -2.39 -0.02 1.14 16 30 H 0.09 1.35 7.90 -2.39 -0.02 1.34 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.64 7.83 -2.39 -0.02 1.62 16 34 H 0.34 10.92 8.21 -89.69 -0.74 10.18 16 35 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 36 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 37 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.10 5.57 6.17 -2.91 -0.02 5.55 16 39 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 40 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -58.72 334.64 2.53 -56.19 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.25 Total: 35.31 kcal Atomic # 6 Polarization: -67.53 SS G_CDS: 3.26 Total: -64.27 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -3.01 Total: -68.30 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -58.72 2.53 -56.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516769155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.576 kcal (2) G-P(sol) polarization free energy of solvation -58.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds