Wall clock time and date at job start Mon Mar 30 2020 07:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47207 * 2 1 4 4 H 1.09000 * 112.84871 * 43.79700 * 3 2 1 5 5 C 1.53782 * 113.61158 * 272.49159 * 3 2 1 6 6 C 1.53953 * 87.11215 * 220.08949 * 5 3 2 7 7 C 1.53775 * 113.61468 * 174.99864 * 3 2 1 8 8 H 1.09000 * 113.61580 * 25.34455 * 7 3 2 9 9 N 1.46908 * 113.61341 * 254.52887 * 7 3 2 10 10 C 1.46903 * 111.00006 * 156.53098 * 9 7 3 11 11 C 1.50697 * 109.47089 * 179.97438 * 10 9 7 12 12 C 1.38633 * 119.74949 * 269.72815 * 11 10 9 13 13 C 1.37619 * 120.24729 * 179.71954 * 12 11 10 14 14 C 1.40721 * 119.74248 * 0.57052 * 13 12 11 15 15 C 1.41402 * 120.24105 * 179.68297 * 14 13 12 16 16 H 1.07999 * 119.99551 * 204.40991 * 15 14 13 17 17 C 1.39940 * 120.00012 * 24.40252 * 15 14 13 18 18 N 1.30825 * 120.00049 * 17.85251 * 17 15 14 19 19 Si 1.86804 * 119.99952 * 197.84801 * 17 15 14 20 20 H 1.48499 * 109.46965 * 90.00080 * 19 17 15 21 21 H 1.48502 * 109.47012 * 210.00137 * 19 17 15 22 22 H 1.48498 * 109.46903 * 330.00249 * 19 17 15 23 23 C 1.40705 * 119.51384 * 359.70257 * 14 13 12 24 24 C 1.37618 * 119.74473 * 359.97438 * 23 14 13 25 25 H 1.08996 * 109.47058 * 300.00362 * 1 2 3 26 26 H 1.09001 * 109.46494 * 60.00292 * 1 2 3 27 27 H 1.09000 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47677 * 239.99204 * 2 1 3 29 29 H 1.09008 * 109.46617 * 119.99327 * 2 1 3 30 30 H 1.08997 * 113.61383 * 334.57285 * 5 3 2 31 31 H 1.08998 * 113.61115 * 105.38436 * 5 3 2 32 32 H 1.08998 * 113.61386 * 270.84266 * 6 5 3 33 33 H 1.08998 * 113.66228 * 139.88918 * 6 5 3 34 34 H 1.00898 * 110.99538 * 280.47985 * 9 7 3 35 35 H 1.08994 * 109.47145 * 59.99604 * 10 9 7 36 36 H 1.08996 * 109.46720 * 299.99684 * 10 9 7 37 37 H 1.07997 * 119.87819 * 359.97438 * 12 11 10 38 38 H 1.07997 * 120.12883 * 180.27640 * 13 12 11 39 39 H 0.97006 * 119.99615 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.13141 * 180.02562 * 23 14 13 41 41 H 1.08005 * 119.87795 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.4976 2.0832 0.6952 5 6 2.1876 2.0436 -1.4077 6 6 3.4915 2.6929 -0.9091 7 6 3.5687 1.5554 0.1228 8 1 4.1019 0.6752 -0.2366 9 7 4.0217 1.9942 1.4497 10 6 5.4046 1.5675 1.7016 11 6 5.8335 2.0351 3.0685 12 6 6.4387 3.2739 3.2131 13 6 6.8292 3.7137 4.4574 14 6 6.6229 2.8954 5.5835 15 6 7.0261 3.3339 6.8659 16 1 7.2409 2.6124 7.6403 17 6 7.1469 4.7025 7.1314 18 7 6.5699 5.5748 6.3455 19 14 8.1320 5.2840 8.6083 20 1 9.5475 5.4895 8.2092 21 1 7.5674 6.5638 9.1071 22 1 8.0641 4.2609 9.6825 23 6 6.0128 1.6375 5.4239 24 6 5.6243 1.2211 4.1711 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8935 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 2.3431 1.2976 -2.1870 31 1 1.4078 2.7623 -1.6595 32 1 3.3466 3.6772 -0.4639 33 1 4.2981 2.6732 -1.6419 34 1 3.9274 2.9936 1.5516 35 1 6.0615 2.0002 0.9472 36 1 5.4635 0.4801 1.6542 37 1 6.6006 3.8981 2.3468 38 1 7.2965 4.6809 4.5685 39 1 6.6534 6.5235 6.5298 40 1 5.8493 1.0016 6.2813 41 1 5.1555 0.2562 4.0462 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516769156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:04 Heat of formation + Delta-G solvation = 15.012073 kcal Electronic energy + Delta-G solvation = -18548.728705 eV Core-core repulsion = 15813.588101 eV Total energy + Delta-G solvation = -2735.140604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -39.38168 -37.58394 -34.62582 -33.31193 -32.23223 -29.80922 -29.19556 -26.48112 -25.64215 -23.97291 -22.67296 -21.40691 -20.96097 -20.02235 -19.27617 -17.26136 -15.86599 -15.35160 -15.16113 -14.48578 -14.25771 -14.11978 -13.70481 -13.39342 -13.13628 -12.67369 -12.56505 -12.44481 -12.02983 -11.90290 -11.70955 -11.59748 -11.31147 -11.21301 -11.00435 -10.91760 -10.76111 -10.55122 -10.32415 -10.08326 -10.03113 -9.48078 -9.34963 -9.11162 -7.89826 -7.41408 -7.25835 -6.74033 -4.32413 2.76623 3.07713 3.11638 3.12015 3.20702 3.94532 4.44905 4.61889 4.68334 4.77581 4.85626 5.13148 5.23714 5.27765 5.47942 5.61939 5.68811 5.76459 5.79274 5.86548 5.88401 5.92379 5.98784 6.02864 6.11563 6.22385 6.32525 6.36998 6.41256 6.46511 6.55125 6.97724 7.10269 7.31251 7.41427 7.53594 7.64911 7.82934 7.93716 8.08543 8.18306 8.33781 8.67104 8.92538 9.01109 10.20498 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035962 B = 0.003585 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.405372 B = 7808.831166 C = 7992.852093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.098 4.098 4 H 0.092 0.908 5 C -0.137 4.137 6 C -0.173 4.173 7 C 0.071 3.929 8 H 0.090 0.910 9 N -0.673 5.673 10 C 0.125 3.875 11 C -0.214 4.214 12 C -0.096 4.096 13 C -0.166 4.166 14 C 0.112 3.888 15 C -0.464 4.464 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.907 3.093 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.228 4.228 24 C -0.069 4.069 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.342 0.658 35 H 0.018 0.982 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.280 0.720 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -4.622 -11.563 13.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.117 4.117 4 H 0.110 0.890 5 C -0.175 4.175 6 C -0.212 4.212 7 C -0.040 4.040 8 H 0.108 0.892 9 N -0.303 5.303 10 C -0.003 4.003 11 C -0.215 4.215 12 C -0.115 4.115 13 C -0.186 4.186 14 C 0.109 3.891 15 C -0.494 4.494 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.419 5.419 19 Si 0.732 3.268 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.248 4.248 24 C -0.088 4.088 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.162 0.838 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.503 -4.910 -11.239 13.882 hybrid contribution 0.831 1.072 0.086 1.359 sum -5.671 -3.839 -11.154 13.088 Atomic orbital electron populations 1.21746 0.96234 1.01082 1.01611 1.21456 0.95483 0.96252 1.01739 1.22759 0.96283 0.96495 0.96198 0.88979 1.22868 0.97646 0.99951 0.96986 1.23664 0.98059 0.99301 1.00164 1.23114 0.95654 0.97117 0.88139 0.89178 1.60559 1.23400 1.19727 1.26631 1.20572 0.86806 0.98612 0.94289 1.18929 1.11785 0.97458 0.93356 1.20522 0.99810 0.94726 0.96405 1.21273 1.04983 1.01228 0.91077 1.17620 0.87713 0.90605 0.93113 1.19609 1.40474 0.91777 0.97492 0.90491 1.25904 0.93619 0.96850 0.97788 1.69838 1.32541 1.03201 1.36278 0.86329 0.80456 0.78557 0.81462 1.19322 1.20354 1.18631 1.20975 1.08627 0.99667 0.95528 1.20335 0.98437 0.97314 0.92696 0.92708 0.93104 0.93227 0.92537 0.91547 0.90528 0.91764 0.90084 0.91951 0.83842 0.96407 0.92226 0.89975 0.86577 0.90958 0.89142 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.90 37.16 0.37 -1.06 16 2 C -0.11 -1.20 5.77 -26.73 -0.15 -1.35 16 3 C -0.10 -1.14 3.45 -89.81 -0.31 -1.45 16 4 H 0.09 1.18 8.13 -51.93 -0.42 0.76 16 5 C -0.14 -1.39 7.64 -25.83 -0.20 -1.59 16 6 C -0.17 -1.98 7.72 -25.83 -0.20 -2.18 16 7 C 0.07 0.92 3.72 -66.90 -0.25 0.67 16 8 H 0.09 1.16 7.84 -51.93 -0.41 0.75 16 9 N -0.67 -10.95 6.60 -107.13 -0.71 -11.66 16 10 C 0.12 2.22 5.66 -4.98 -0.03 2.19 16 11 C -0.21 -4.66 5.41 -104.33 -0.56 -5.23 16 12 C -0.10 -2.23 9.67 -39.66 -0.38 -2.61 16 13 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 14 C 0.11 3.02 5.58 -106.82 -0.60 2.43 16 15 C -0.46 -12.47 9.05 -37.74 -0.34 -12.81 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 17 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 18 N -0.79 -20.67 10.95 55.55 0.61 -20.07 16 19 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 C -0.23 -5.72 9.80 -38.88 -0.38 -6.10 16 24 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.56 7.84 -51.93 -0.41 0.15 16 29 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 30 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.96 7.83 -51.93 -0.41 0.56 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.34 5.74 8.20 -39.29 -0.32 5.41 16 35 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 37 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -26.78 334.60 -10.83 -37.61 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.89 Total: 9.21 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: -3.85 Total: -33.91 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: -0.10 Total: -31.72 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.78 -10.83 -37.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516769156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.618 kcal (2) G-P(sol) polarization free energy of solvation -26.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds